Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Reverse (-)

24376820 .. 24379308

Gene Structure 2489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32000.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTGTGATCCAAGCGAGCACGGAGAGAGAGAAAAACGTCACAAACATCGGAGAAGAATAAGCATTGCATCGGAAAACACAACCCTATTCTCTGATGAGTCCTCCTCGTCGCCGGTGCATTCAACCATGGACAATTTCTCGAGATCGAGCTCTTTATCACTGGGGGAGAAGCTGTGCGTTGCGTTCCTACCGTGTGTAGCGATCATAGAGGAGTTGGCTTTGACCGTGATAGGTTGCTTCACTTACCGGCCTCGCCCCGTCAAACGTGGTTACGCTATCGGAGACATGACTCAGCTCGCCGAAGAAACCCGATTTACTGTTAATGAGCTGGAGGCGTTATATGAGTTGTTTAAGAAGCTGAGTAGCTCGATCATCGATGACGGGTTGATTCACAAGGAGGAGCTTCAGTTAGCACTGTTCCAAACTCGCCAGGGCGAAAATCTATTCCTTGATCGTGTTTTTGATTTGTTTGATGAGAAGAGAAATGGTGTCATTGAATTCGATGAGTTCATTCATGCGCTCAATGTGTTTCATCCCTATGCTCCTATACAAGATAAGATTGATTTTGCATTTAGGCTGTATGATCTGAGACAAACTGGCTTCATTGAGCGTGAAGAAGTTAAGCAAATGGTGATTGCCATATTGATGGAGTCTGACATGAAACTTTCCGATGATCTTCTGGAGTCTATCATTGATAAGACATTTGCTGATGCTGATGCCGATAAGGATGGGAGAATCAATAAGGAAGAATGGAAGGATTTTGTGCTTCGACATCCAACTCTTCTGAAAAACATGACTCTTCCTTATCTGAAGGACATCAGTACAATATATCCGAGTTTCATTTTCCACACAGAAGTTGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009628 GO:0009651 GO:0009705 GO:0010959 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0042538 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

289

Amino Acids

33.36

Weight (kDa)

5.0

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	90 - 157	1.8e-10	EF-hand domain pair
EF-hand_1	PF00036	136 - 160	5.5e-06	EF hand domain
EF-hand_5	PF13202	136 - 160	4.1e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	2
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	2 cut(s)	389, 830
AfaI	GTAC	1 cut(s)	823
AgsI	TTSAA	3 cut(s)	123, 497, 860
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	7 cut(s)	150, 172, 295, 328, 358, 366, 403
AluI	AGCT	7 cut(s)	150, 172, 295, 328, 358, 366, 403
Alw21I	GWGCWC	2 cut(s)	21, 152
Alw26I	GTCTC	2 cut(s)	276, 583
AlwI	GGATC	1 cut(s)	2
Ama87I	CYCGRG	1 cut(s)	139
AoxI	GGCC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	520
AsuHPI	GGTGA	1 cut(s)	643
AvaI	CYCGRG	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	152
Bbv12I	GWGCWC	2 cut(s)	21, 152
BccI	CCATC	2 cut(s)	640, 722
BciT130I	CCWGG	1 cut(s)	431
BcoDI	GTCTC	2 cut(s)	276, 583
Bme1390I	CCNGG	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	431
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	3 cut(s)	77, 700, 706
BmuI	ACTGGG	1 cut(s)	170
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	2 cut(s)	350, 701
Bsa29I	ATCGAT	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	126, 430
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 392, 422
Bse118I	RCCGGY	2 cut(s)	112, 246
Bse1I	ACTGG	2 cut(s)	165, 601
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	431
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	126, 430
BseGI	GGATG	3 cut(s)	532, 733, 772
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	3 cut(s)	305, 350, 578
BseNI	ACTGG	2 cut(s)	165, 601
BseRI	GAGGAG	3 cut(s)	94, 224, 413
BshFI	GGCC	1 cut(s)	250
BshVI	ATCGAT	1 cut(s)	375
BsiHKAI	GWGCWC	2 cut(s)	21, 152
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	113, 247
BsmAI	GTCTC	2 cut(s)	276, 583
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	21, 152
Bsp143I	GATC	7 cut(s)	7, 143, 201, 369, 451, 583, 673
Bsp19I	CCATGG	1 cut(s)	126
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	3 cut(s)	304, 351, 579
BspDI	ATCGAT	1 cut(s)	375
BspPI	GGATC	1 cut(s)	2
BsrDI	GCAATG	1 cut(s)	63
BsrFI	RCCGGY	2 cut(s)	112, 246
BsrI	ACTGG	2 cut(s)	165, 601
BssAI	RCCGGY	2 cut(s)	112, 246
BssECI	CCNNGG	2 cut(s)	126, 430
BssMI	GATC	7 cut(s)	7, 143, 201, 369, 451, 583, 673
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	4 cut(s)	192, 226, 319, 417
Bst6I	CTCTTC	3 cut(s)	473, 786, 804
BstC8I	GCNNGC	2 cut(s)	17, 297
BstDEI	CTNAG	3 cut(s)	291, 359, 587
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	532, 733, 772
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	7 cut(s)	10, 146, 204, 372, 454, 586, 676
BstMAI	GTCTC	2 cut(s)	276, 583
BstMBI	GATC	7 cut(s)	7, 143, 201, 369, 451, 583, 673
BstNI	CCWGG	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	429
BstXI	CCANNNNNNTGG	1 cut(s)	646
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	250
BsuTUI	ATCGAT	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	532, 733, 772
BtsIMutI	CAGTG	2 cut(s)	158, 413
Cac8I	GCNNGC	2 cut(s)	17, 297
CfoI	GCGC	1 cut(s)	520
Cfr10I	RCCGGY	2 cut(s)	112, 246
ClaI	ATCGAT	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	822
CviAII	CATG	5 cut(s)	127, 286, 515, 658, 793
CviQI	GTAC	1 cut(s)	822
DdeI	CTNAG	3 cut(s)	291, 359, 587
DpnI	GATC	7 cut(s)	9, 145, 203, 371, 453, 585, 675
DpnII	GATC	7 cut(s)	7, 143, 201, 369, 451, 583, 673
Eam1104I	CTCTTC	3 cut(s)	473, 786, 804
EarI	CTCTTC	3 cut(s)	473, 786, 804
Ecl136II	GAGCTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	150
Eco57I	CTGAAG	2 cut(s)	389, 830
Eco88I	CYCGRG	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	5 cut(s)	130, 289, 518, 661, 796
FatI	CATG	5 cut(s)	126, 285, 514, 657, 792
FokI	GGATG	3 cut(s)	519, 740, 759
FriOI	GRGCYC	1 cut(s)	152
GlaI	GCGC	1 cut(s)	519
GsuI	CTGGAG	2 cut(s)	350, 701
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	2 cut(s)	113, 247
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	5 cut(s)	130, 289, 518, 661, 796
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HinfI	GANTC	7 cut(s)	98, 289, 388, 650, 683, 735, 796
HpaII	CCGG	2 cut(s)	113, 247
HphI	GGTGA	1 cut(s)	643
Hpy188III	TCNNGA	3 cut(s)	139, 141, 680
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	748, 805
HpyCH4III	ACNGT	4 cut(s)	192, 226, 319, 417
HpyCH4IV	ACGT	2 cut(s)	37, 265
HpyCH4V	TGCA	3 cut(s)	68, 118, 569
HpyF3I	CTNAG	3 cut(s)	291, 359, 587
HpySE526I	ACGT	2 cut(s)	37, 265
Hsp92II	CATG	5 cut(s)	130, 289, 518, 661, 796
HspAI	GCGC	1 cut(s)	518
Kzo9I	GATC	7 cut(s)	7, 143, 201, 369, 451, 583, 673
LmnI	GCTCC	2 cut(s)	400, 547
LpnPI	CCDG	8 cut(s)	126, 146, 260, 314, 416, 443, 582, 665
LweI	GCATC	3 cut(s)	77, 700, 706
MaeII	ACGT	2 cut(s)	37, 265
MaeIII	GTNAC	2 cut(s)	38, 269
MalI	GATC	7 cut(s)	9, 145, 203, 371, 453, 585, 675
MboI	GATC	7 cut(s)	7, 143, 201, 369, 451, 583, 673
MboII	GAAGA	8 cut(s)	66, 314, 490, 626, 668, 758, 773, 791
MhlI	GDGCHC	2 cut(s)	21, 152
MluCI	AATT	2 cut(s)	133, 497
MlyI	GAGTC	5 cut(s)	107, 283, 659, 692, 790
MmeI	TCCRAC	1 cut(s)	800
MnlI	CCTC	6 cut(s)	112, 115, 202, 261, 325, 391
MseI	TTAA	3 cut(s)	321, 351, 621
MslI	CAYNNNNRTG	2 cut(s)	537, 644
MspI	CCGG	2 cut(s)	113, 247
MspR9I	CCNGG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	7 cut(s)	7, 143, 201, 369, 451, 583, 673
NlaIII	CATG	5 cut(s)	130, 289, 518, 661, 796
NmuCI	GTSAC	1 cut(s)	38
PaeR7I	CTCGAG	1 cut(s)	139
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	388, 735
PleI	GAGTC	5 cut(s)	106, 283, 658, 691, 790
PpsI	GAGTC	5 cut(s)	106, 283, 658, 691, 790
Psp124BI	GAGCTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
RsaI	GTAC	1 cut(s)	823
RsaNI	GTAC	1 cut(s)	822
RseI	CAYNNNNRTG	2 cut(s)	537, 644
SacI	GAGCTC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	321, 351, 621
Sau3AI	GATC	7 cut(s)	7, 143, 201, 369, 451, 583, 673
SchI	GAGTC	5 cut(s)	107, 283, 659, 692, 790
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	2 cut(s)	21, 152
SfaNI	GCATC	3 cut(s)	77, 700, 706
Sfr274I	CTCGAG	1 cut(s)	139
SgrAI	CRCCGGYG	1 cut(s)	112
SlaI	CTCGAG	1 cut(s)	139
SmiMI	CAYNNNNRTG	2 cut(s)	537, 644
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	2 cut(s)	133, 497
SstI	GAGCTC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	4 cut(s)	192, 226, 319, 417
TaiI	ACGT	2 cut(s)	40, 268
TaqI	TCGA	6 cut(s)	140, 146, 368, 375, 501, 769
TasI	AATT	2 cut(s)	133, 497
TatI	WGTACW	1 cut(s)	821
TfiI	GAWTC	2 cut(s)	388, 735
Tru1I	TTAA	3 cut(s)	321, 351, 621
Tru9I	TTAA	3 cut(s)	321, 351, 621
TscAI	CASTG	2 cut(s)	165, 420
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	6 cut(s)	499, 503, 521, 592, 674, 829
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	2 cut(s)	165, 420
XapI	RAATTY	1 cut(s)	497
XhoI	CTCGAG	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.