Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Forward (+)

66655090 .. 66656896

Gene Structure 1807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCTCGGGCGTCGAGCAGAACGAGCTCTCTATCACTGGGCGAGAAGCTGTGCGCGGCGTTTATACCGTTTGTAGCGATCGTAGAGGTGTTGGTTTTGGCCGTCACCGATTGCTTCACTTACCGGCCTCGCCCGGTCAAACGTGCTTATGCTTTCGGAGACATGACTCAGCTCGCCCGGGAAACTCGATTTAGTGTTAATGAGCTGGAGGCGTTGTATGAGCTGTTTAAGAAGTTGAGTAGCTCGATCATCGACGACGGGTTGATTCACAAGGAAGAGCTTCAATTAGCACTGTTCCAAACTCCCCAGGGCGAAAATCTTTTCCTTGACCGGGTTTTTGATGTGTTTGACGAGAAGAAAAATGGTGTCATTGAATTCGATGAGTTCATTCACGCGCTCAATGTGTTTCATCCCTATGCTCCTATACAGGAGAAGATTGATTTTGCATTTAGGCTGTATGATCTGAGACATACTGGATTCATTGAGCGTGAAGAAGTTAAGCAAATGGTGATTGCTATACTGATGGAGTCTGACATGATACTGTCAGATGATCTTTTGGAGTCTATCATTGATAAGACATTTGATGACGCTGATGCCGACAAGGATGGGAGAATCAATAAACAAGAATGGAAGGCTTTTGTGCTTCGACATCCAGCCCTTCTGAAAAACATGACTCTTCCTTATTTGAAGGACATCACCACAATGTTTCCAAGTTTCATTTTCAACACCGAAGTCGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009628 GO:0009651 GO:0009705 GO:0010959 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0042538 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

247

Amino Acids

28.55

Weight (kDa)

4.84

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	144 - 211	8.9e-11	EF-hand domain pair
EF-hand_1	PF00036	190 - 214	8.3e-06	EF hand domain
EF-hand_5	PF13202	190 - 214	3.7e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	56, 395
AciI	CCGC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	4 cut(s)	284, 374, 688, 724
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	7 cut(s)	27, 49, 172, 205, 223, 243, 280
AluI	AGCT	7 cut(s)	27, 49, 172, 205, 223, 243, 280
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	153, 460
Ama87I	CYCGRG	2 cut(s)	6, 177
AoxI	GGCC	2 cut(s)	99, 125
ApoI	RAATTY	1 cut(s)	374
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	2 cut(s)	56, 397
AsuC2I	CCSGG	4 cut(s)	134, 178, 179, 332
AsuHPI	GGTGA	3 cut(s)	97, 520, 688
AvaI	CYCGRG	2 cut(s)	6, 177
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BccI	CCATC	2 cut(s)	517, 599
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	4 cut(s)	134, 178, 179, 332
BcoDI	GTCTC	2 cut(s)	153, 460
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	5 cut(s)	134, 178, 179, 308, 332
BmeT110I	CYCGRG	2 cut(s)	6, 177
BmrFI	CCNGG	5 cut(s)	134, 178, 179, 308, 332
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	583
BmuI	ACTGGG	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	227
BpuMI	CCSGG	4 cut(s)	134, 178, 179, 332
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	4 cut(s)	5, 177, 306, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	42, 478
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	4 cut(s)	5, 177, 306, 307
BseGI	GGATG	3 cut(s)	409, 610, 649
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	2 cut(s)	182, 455
BseNI	ACTGG	2 cut(s)	42, 478
Bsh1236I	CGCG	2 cut(s)	56, 395
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	101, 127
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	2 cut(s)	6, 177
BsiSI	CCGG	4 cut(s)	124, 134, 178, 331
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	2 cut(s)	153, 460
BsnI	GGCC	2 cut(s)	101, 127
BsoBI	CYCGRG	2 cut(s)	6, 177
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	78, 246, 460, 550
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	2 cut(s)	101, 127
BspCNI	CTCAG	2 cut(s)	181, 456
BspFNI	CGCG	2 cut(s)	56, 395
BspQI	GCTCTTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	42, 478
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	5, 177, 306, 307
BssMI	GATC	4 cut(s)	78, 246, 460, 550
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	3 cut(s)	69, 294, 543
Bst6I	CTCTTC	2 cut(s)	270, 681
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	168, 464
BstF5I	GGATG	3 cut(s)	409, 610, 649
BstFNI	CGCG	2 cut(s)	56, 395
BstHHI	GCGC	2 cut(s)	56, 397
BstKTI	GATC	4 cut(s)	81, 249, 463, 553
BstMAI	GTCTC	2 cut(s)	153, 460
BstMBI	GATC	4 cut(s)	78, 246, 460, 550
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	5 cut(s)	132, 176, 177, 306, 330
BstUI	CGCG	2 cut(s)	56, 395
BsuRI	GGCC	2 cut(s)	101, 127
BtsCI	GGATG	3 cut(s)	409, 610, 649
BtsIMutI	CAGTG	2 cut(s)	35, 290
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	2 cut(s)	56, 397
Cfr10I	RCCGGY	1 cut(s)	123
Cfr9I	CCCGGG	1 cut(s)	177
CseI	GACGC	1 cut(s)	596
CviAII	CATG	3 cut(s)	163, 535, 670
DdeI	CTNAG	2 cut(s)	168, 464
DpnI	GATC	4 cut(s)	80, 248, 462, 552
DpnII	GATC	4 cut(s)	78, 246, 460, 550
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	270, 681
EarI	CTCTTC	2 cut(s)	270, 681
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	27
Eco88I	CYCGRG	2 cut(s)	6, 177
EcoICRI	GAGCTC	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	3 cut(s)	166, 538, 673
FatI	CATG	3 cut(s)	162, 534, 669
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	3 cut(s)	396, 617, 636
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	2 cut(s)	55, 396
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	101, 127
HapII	CCGG	4 cut(s)	124, 134, 178, 331
HgaI	GACGC	1 cut(s)	596
HhaI	GCGC	2 cut(s)	56, 397
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	3 cut(s)	166, 538, 673
Hin6I	GCGC	2 cut(s)	54, 395
HinP1I	GCGC	2 cut(s)	54, 395
HinfI	GANTC	7 cut(s)	166, 265, 477, 527, 560, 612, 673
HpaII	CCGG	4 cut(s)	124, 134, 178, 331
HphI	GGTGA	3 cut(s)	97, 520, 688
Hpy188I	TCNGA	5 cut(s)	158, 465, 532, 547, 663
Hpy99I	CGWCG	3 cut(s)	16, 257, 260
HpyAV	CCTTC	3 cut(s)	625, 668, 682
HpyCH4III	ACNGT	3 cut(s)	69, 294, 543
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	2 cut(s)	168, 464
HpySE526I	ACGT	1 cut(s)	142
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	166, 538, 673
HspAI	GCGC	2 cut(s)	54, 395
Kzo9I	GATC	4 cut(s)	78, 246, 460, 550
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	424
LweI	GCATC	1 cut(s)	583
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	4 cut(s)	80, 248, 462, 552
MboI	GATC	4 cut(s)	78, 246, 460, 550
MboII	GAAGA	5 cut(s)	287, 367, 445, 503, 668
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	2 cut(s)	284, 374
MlyI	GAGTC	4 cut(s)	160, 536, 569, 667
MnlI	CCTC	4 cut(s)	15, 79, 138, 202
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	3 cut(s)	198, 228, 498
MslI	CAYNNNNRTG	2 cut(s)	414, 701
MspI	CCGG	4 cut(s)	124, 134, 178, 331
MspR9I	CCNGG	5 cut(s)	134, 178, 179, 308, 332
MvaI	CCWGG	1 cut(s)	308
MvnI	CGCG	2 cut(s)	56, 395
MwoI	GCNNNNNNNGC	1 cut(s)	24
NciI	CCSGG	4 cut(s)	134, 178, 179, 332
NdeII	GATC	4 cut(s)	78, 246, 460, 550
NlaIII	CATG	3 cut(s)	166, 538, 673
NmuCI	GTSAC	1 cut(s)	103
PasI	CCCWGGG	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 594
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	265, 477, 612
PkrI	GCNGC	1 cut(s)	58
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	4 cut(s)	160, 535, 568, 667
PpsI	GAGTC	4 cut(s)	160, 535, 568, 667
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PvuI	CGATCG	1 cut(s)	81
RseI	CAYNNNNRTG	2 cut(s)	414, 701
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	3 cut(s)	198, 228, 498
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	4 cut(s)	78, 246, 460, 550
SchI	GAGTC	4 cut(s)	160, 536, 569, 667
ScrFI	CCNGG	5 cut(s)	134, 178, 179, 308, 332
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	9 cut(s)	29, 51, 90, 145, 174, 207, 225, 245, 282
SfaNI	GCATC	1 cut(s)	583
SmaI	CCCGGG	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	414, 701
Sse9I	AATT	2 cut(s)	284, 374
SsiI	CCGC	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	5 cut(s)	132, 176, 177, 306, 330
TaaI	ACNGT	3 cut(s)	69, 294, 543
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	7 cut(s)	14, 187, 245, 252, 378, 646, 735
TasI	AATT	2 cut(s)	284, 374
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	265, 477, 612
Tru1I	TTAA	3 cut(s)	198, 228, 498
Tru9I	TTAA	3 cut(s)	198, 228, 498
TscAI	CASTG	2 cut(s)	42, 297
TseFI	GTSAC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	4 cut(s)	376, 398, 469, 706
TspMI	CCCGGG	1 cut(s)	177
TspRI	CASTG	2 cut(s)	42, 297
XapI	RAATTY	1 cut(s)	374
XmaI	CCCGGG	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.