Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Reverse (-)

25822855 .. 25832126

Gene Structure 9272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGACAACGACGAACACAGAGAGGCAGAGAGCTCTTCTTCTCCGCGATGTTCTGTTGCGCAGGGACATGGATGCCAGGCTCACCTTTCTGCAGAATTCGAGCACGAGCTCGCTCCGAATCCGCGAGAAACTGTGTGCGTTGTGCGTACCAGTGGTTGGTCTCATTCAGGCTTTCATCTTTAGCTTAGTTGGGTGCTTCGATTACCACCTTCCACGTCATCAACACCGAGCCGCTTTCACCCACGACGACGTCGTTCGCCTCGCTGCCACCTCCCCATTTAGTGTAAATGAGGTGGAAGCATTGCGTGAATTGTTCAACAAGTTGAGTAGTTCGATTCTAGATGATGGCTTAATTCACAAGGAGGATCTTAGGTTGGCTCTGTTCAAAACTCAATCAGGCGAAAATCTTTTTCTTGATAGGGTATTTGATGTTTTTGACGAAAAGAAAGATGGCGTCATTGAATTTGAGGAGTTTATCCATGCATTAAGTGTATTTCATCCCTGCACTCCTATTGAACAGAAGATTGACTTTGCATTCAGGTTGTATGATTTGAGACAGACTGGATATATTGAGCGGGAAGAAGTTACGCAAATGGTAGTCGCCACTTTGTTGGAATCCGGTATACAGGTGCCGGATGAAATTCTAGAAACAATTGTGGATAAGGCAAGACTCATGAGTTTTCAATCTTTTGTATTTGTTCTGTTTTTCTTTCTGTGTGCTTGCCAAACTTCTCCTGAAATTTTATACTCTGAAAGGCATCTTTCTGTTCTTCAGACATTTGAAGATGCTGATGCCGATAAGGATGGCAAAATTAGCAGCGATGAATGGAAGGCTTTTGTATTTCGGCAGCCTACACTCGTAAAGAACATGACACTTCCATATTTAAAGGACATCACCACAGTCTTCCCAAGTTTTATTTTCAACACTGAAGTCGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

313

Amino Acids

36.1

Weight (kDa)

5.01

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	172 - 275	9.4e-07	EF-hand domain pair
EF-hand_5	PF13202	259 - 280	4.6e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
Acc16I	TGCGCA	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	628
AccB7I	CCANNNNNTGG	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	622
AccII	CGCG	2 cut(s)	45, 123
AciI	CCGC	4 cut(s)	43, 121, 231, 574
AclWI	GGATC	1 cut(s)	372
AcsI	RAATTY	4 cut(s)	94, 461, 639, 738
AcuI	CTGAAG	1 cut(s)	755
AcyI	GRCGYC	2 cut(s)	249, 453
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	7 cut(s)	316, 385, 461, 515, 683, 782, 922
AjiI	CACGTC	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	3 cut(s)	32, 108, 183
AluI	AGCT	3 cut(s)	32, 108, 183
Alw21I	GWGCWC	3 cut(s)	34, 104, 110
Alw26I	GTCTC	2 cut(s)	164, 547
AlwI	GGATC	1 cut(s)	372
ApeKI	GCWGC	3 cut(s)	263, 816, 847
ApoI	RAATTY	4 cut(s)	94, 461, 639, 738
AspLEI	GCGC	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	73, 229, 886
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	2 cut(s)	34, 110
BauI	CACGAG	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	895
Bbv12I	GWGCWC	3 cut(s)	34, 104, 110
BbvI	GCAGC	3 cut(s)	250, 828, 859
BccI	CCATC	3 cut(s)	338, 443, 797
BciT130I	CCWGG	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	164, 547
BfaI	CTAG	2 cut(s)	338, 644
BfmI	CTRYAG	1 cut(s)	89
BisI	GCNGC	4 cut(s)	231, 264, 817, 848
BlsI	GCNGC	4 cut(s)	232, 265, 818, 849
Bme1390I	CCNGG	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	4 cut(s)	61, 766, 775, 781
BpiI	GAAGAC	1 cut(s)	895
BsaHI	GRCGYC	2 cut(s)	249, 453
BsaI	GGTCTC	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	617
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	149, 565
Bse3DI	GCAATG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	76
BseGI	GGATG	4 cut(s)	76, 496, 640, 808
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	299
BseNI	ACTGG	2 cut(s)	149, 565
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	3 cut(s)	250, 828, 859
BsgI	GTGCAG	1 cut(s)	487
Bsh1236I	CGCG	2 cut(s)	45, 123
BshNI	GGYRCC	1 cut(s)	628
BsiHKAI	GWGCWC	3 cut(s)	34, 104, 110
BsiSI	CCGG	2 cut(s)	618, 632
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	164, 547
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	533
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	34, 104, 110
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	4 cut(s)	43, 121, 231, 574
BspFNI	CGCG	2 cut(s)	45, 123
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	1 cut(s)	630
BspMAI	CTGCAG	1 cut(s)	93
BspPI	GGATC	1 cut(s)	372
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	628
BspTNI	GGTCTC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	574
BsrDI	GCAATG	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	149, 565
BssMI	GATC	1 cut(s)	364
BssNAI	GTATAC	1 cut(s)	623
BssNI	GRCGYC	2 cut(s)	249, 453
BssSI	CACGAG	1 cut(s)	103
Bst1107I	GTATAC	1 cut(s)	623
Bst2BI	CACGAG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	132, 901
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	2 cut(s)	249, 453
BstC8I	GCNNGC	2 cut(s)	110, 721
BstDEI	CTNAG	2 cut(s)	184, 368
BstF5I	GGATG	4 cut(s)	76, 496, 640, 808
BstFNI	CGCG	2 cut(s)	45, 123
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	2 cut(s)	164, 547
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	813
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	89
BstUI	CGCG	2 cut(s)	45, 123
BstV1I	GCAGC	3 cut(s)	250, 828, 859
BstV2I	GAAGAC	1 cut(s)	895
BstX2I	RGATCY	1 cut(s)	364
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	364
BstZ17I	GTATAC	1 cut(s)	623
BtgZI	GCGATG	2 cut(s)	60, 834
BtrI	CACGTC	1 cut(s)	215
BtsCI	GGATG	4 cut(s)	76, 496, 640, 808
BtsIMutI	CAGTG	2 cut(s)	156, 924
Cac8I	GCNNGC	2 cut(s)	110, 721
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	1 cut(s)	60
CseI	GACGC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	4 cut(s)	67, 479, 673, 868
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	2 cut(s)	184, 368
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
DraI	TTTAAA	1 cut(s)	885
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	2 cut(s)	32, 108
Eco24I	GRGCYC	2 cut(s)	34, 110
Eco31I	GGTCTC	1 cut(s)	164
Eco53kI	GAGCTC	2 cut(s)	32, 108
Eco57I	CTGAAG	1 cut(s)	755
EcoICRI	GAGCTC	2 cut(s)	32, 108
EcoRI	GAATTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	74
EcoT22I	ATGCAT	1 cut(s)	484
EcoT38I	GRGCYC	2 cut(s)	34, 110
FaeI	CATG	4 cut(s)	70, 482, 676, 871
FaiI	YATR	9 cut(s)	68, 480, 546, 567, 623, 674, 745, 869, 880
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	4 cut(s)	66, 478, 672, 867
FauI	CCCGC	1 cut(s)	567
FblI	GTMKAC	1 cut(s)	622
Fnu4HI	GCNGC	4 cut(s)	231, 264, 817, 848
FokI	GGATG	4 cut(s)	83, 483, 647, 815
FriOI	GRGCYC	2 cut(s)	34, 110
Fsp4HI	GCNGC	4 cut(s)	231, 264, 817, 848
FspBI	CTAG	2 cut(s)	338, 644
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	4 cut(s)	231, 264, 817, 848
HapII	CCGG	2 cut(s)	618, 632
HgaI	GACGC	1 cut(s)	442
HhaI	GCGC	1 cut(s)	60
Hin1I	GRCGYC	2 cut(s)	249, 453
Hin1II	CATG	4 cut(s)	70, 482, 676, 871
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	4 cut(s)	117, 334, 614, 669
HpaII	CCGG	2 cut(s)	618, 632
HphI	GGTGA	3 cut(s)	73, 229, 886
Hpy166II	GTNNAC	1 cut(s)	623
Hpy188I	TCNGA	3 cut(s)	116, 751, 774
Hpy188III	TCNNGA	5 cut(s)	338, 413, 644, 673, 734
Hpy8I	GTNNAC	1 cut(s)	623
Hpy99I	CGWCG	4 cut(s)	13, 248, 251, 254
HpyAV	CCTTC	2 cut(s)	218, 823
HpyCH4III	ACNGT	2 cut(s)	132, 901
HpyCH4IV	ACGT	2 cut(s)	214, 249
HpyCH4V	TGCA	4 cut(s)	91, 482, 504, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	813
HpyF3I	CTNAG	2 cut(s)	184, 368
HpySE526I	ACGT	2 cut(s)	214, 249
Hsp92I	GRCGYC	2 cut(s)	249, 453
Hsp92II	CATG	4 cut(s)	70, 482, 676, 871
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	364
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	117
Lsp1109I	GCAGC	3 cut(s)	250, 828, 859
LweI	GCATC	4 cut(s)	61, 766, 775, 781
MaeI	CTAG	2 cut(s)	338, 644
MaeII	ACGT	2 cut(s)	214, 249
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	1 cut(s)	366
MbiI	CCGCTC	1 cut(s)	574
MboI	GATC	1 cut(s)	364
MboII	GAAGA	7 cut(s)	26, 29, 532, 590, 761, 794, 895
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	3 cut(s)	34, 104, 110
MluCI	AATT	8 cut(s)	94, 308, 351, 461, 639, 651, 738, 810
MlyI	GAGTC	1 cut(s)	663
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	7 cut(s)	15, 269, 280, 283, 355, 460, 928
Mph1103I	ATGCAT	1 cut(s)	484
MseI	TTAA	3 cut(s)	350, 485, 884
MspI	CCGG	2 cut(s)	618, 632
MspR9I	CCNGG	1 cut(s)	76
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	2 cut(s)	45, 123
MwoI	GCNNNNNNNGC	1 cut(s)	813
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	4 cut(s)	70, 482, 676, 871
NlaIV	GGNNCC	1 cut(s)	630
NsbI	TGCGCA	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	484
PagI	TCATGA	1 cut(s)	672
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	1 cut(s)	533
PfeI	GAWTC	3 cut(s)	117, 334, 614
PflFI	GACNNNGTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	4 cut(s)	232, 265, 818, 849
PleI	GAGTC	1 cut(s)	663
PpsI	GAGTC	1 cut(s)	663
Psp124BI	GAGCTC	2 cut(s)	34, 110
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	630
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SacI	GAGCTC	2 cut(s)	34, 110
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	350, 485, 884
SatI	GCNGC	4 cut(s)	231, 264, 817, 848
Sau3AI	GATC	1 cut(s)	364
SchI	GAGTC	1 cut(s)	663
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	3 cut(s)	34, 104, 110
SfaNI	GCATC	4 cut(s)	61, 766, 775, 781
SfcI	CTRYAG	1 cut(s)	89
Sse9I	AATT	8 cut(s)	94, 308, 351, 461, 639, 651, 738, 810
SsiI	CCGC	4 cut(s)	43, 121, 231, 574
SspMI	CTAG	2 cut(s)	338, 644
SstI	GAGCTC	2 cut(s)	34, 110
StyD4I	CCNGG	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	132, 901
TaiI	ACGT	2 cut(s)	217, 252
TaqI	TCGA	4 cut(s)	98, 198, 332, 933
TasI	AATT	8 cut(s)	94, 308, 351, 461, 639, 651, 738, 810
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	117, 334, 614
Tru1I	TTAA	3 cut(s)	350, 485, 884
Tru9I	TTAA	3 cut(s)	350, 485, 884
TscAI	CASTG	2 cut(s)	156, 931
TseI	GCWGC	3 cut(s)	263, 816, 847
TspDTI	ATGAA	4 cut(s)	163, 485, 651, 837
TspRI	CASTG	2 cut(s)	156, 931
Tth111I	GACNNNGTC	1 cut(s)	248
Van91I	CCANNNNNTGG	1 cut(s)	155
XapI	RAATTY	4 cut(s)	94, 461, 639, 738
XbaI	TCTAGA	2 cut(s)	337, 643
XmiI	GTMKAC	1 cut(s)	622
XspI	CTAG	2 cut(s)	338, 644
ZraI	GACGTC	1 cut(s)	250
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.