Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017450.1

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Reverse (-)

1045 .. 3715

Gene Structure 2671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017450.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgacgacgacaaacacagagaggcagagagctcttcttctccgcgatgttctgttgcgcagggacatggacgccaggctcagctttctgagagctcttcttctccgcgatgttctgttgcgcagggacatggacgccaggctcagctttctggattcgagcacgagctcgctccaaatcggcgagaagctgtgtgcgttgtgcataccagtggttggtctgatcgaggctttcatcttcagcttagccggctgcttcgaacaacaccgtccacgccgtcaccaccgagccgctttcacccacgacgacgtcgttcgcctcgctgccacctccccatttagtgtaaatgacgtggaagcattgcgtgaattgttcaacaagttgagcagttcgattctagatgatggcttaattcacaaggaggagcttcagttggctctgttcaaaactcaagcaggcgaaaatatttttcttgatagggtatttgatgtttttgacgaaaagaaaaatggagtcattgaatttgaggagtttatccatgcattaagtgtatttcatccctgcactcctcttgaacagaagattgactttgcattcaggttgtatgatttgagacagactggatatattgagcgggaagaagttaggcaaatggtagtcgccactttgttggaatccggcatacaggtgccagatgaaactctagaaacaattgtggataagacatttgaagatgctgatgctgataaggatggcaaaattagcaacgatgaatggaaggcttttgtatttcagcggcctacactcgtaaagaacatgacacttccatatttaaagaacatcaccacagtcttcccaagttttattttcaacactgaagtcgaggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

296

Amino Acids

34.08

Weight (kDa)

5.09

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	312
Acc16I	TGCGCA	2 cut(s)	59, 122
AccB1I	GGYRCC	1 cut(s)	688
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	634
AccII	CGCG	2 cut(s)	45, 108
AciI	CCGC	5 cut(s)	43, 106, 291, 634, 796
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	2 cut(s)	223, 413
AcyI	GRCGYC	3 cut(s)	72, 135, 309
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	6 cut(s)	376, 445, 521, 575, 731, 871
AjiI	CACGTC	1 cut(s)	352
AjnI	CCWGG	2 cut(s)	74, 137
AluBI	AGCT	8 cut(s)	32, 84, 95, 147, 168, 190, 243, 427
AluI	AGCT	8 cut(s)	32, 84, 95, 147, 168, 190, 243, 427
Alw21I	GWGCWC	4 cut(s)	34, 97, 164, 170
Alw26I	GTCTC	1 cut(s)	607
AoxI	GGCC	1 cut(s)	797
ApeKI	GCWGC	2 cut(s)	252, 323
ApoI	RAATTY	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	60, 123
AsuHPI	GGTGA	3 cut(s)	272, 289, 835
AsuII	TTCGAA	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	3 cut(s)	34, 97, 170
BauI	CACGAG	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	844
Bbv12I	GWGCWC	4 cut(s)	34, 97, 164, 170
BbvI	GCAGC	2 cut(s)	239, 310
BccI	CCATC	2 cut(s)	398, 746
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	2 cut(s)	76, 139
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	2 cut(s)	398, 704
BisI	GCNGC	4 cut(s)	253, 291, 324, 797
BlpI	GCTNAGC	3 cut(s)	80, 143, 244
BlsI	GCNGC	4 cut(s)	254, 292, 325, 798
Bme1390I	CCNGG	2 cut(s)	76, 139
BmgBI	CACGTC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	2 cut(s)	76, 139
BmsI	GCATC	2 cut(s)	724, 730
BpiI	GAAGAC	1 cut(s)	844
Bpu1102I	GCTNAGC	3 cut(s)	80, 143, 244
Bpu14I	TTCGAA	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	435
BsaHI	GRCGYC	3 cut(s)	72, 135, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	209, 625
Bse3DI	GCAATG	1 cut(s)	359
BseBI	CCWGG	2 cut(s)	76, 139
BseGI	GGATG	2 cut(s)	556, 757
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	3 cut(s)	80, 94, 157
BseNI	ACTGG	2 cut(s)	209, 625
BseRI	GAGGAG	3 cut(s)	437, 542, 558
BseXI	GCAGC	2 cut(s)	239, 310
BsgI	GTGCAG	1 cut(s)	547
Bsh1236I	CGCG	2 cut(s)	45, 108
BshFI	GGCC	1 cut(s)	799
BshNI	GGYRCC	1 cut(s)	688
BsiHKAI	GWGCWC	4 cut(s)	34, 97, 164, 170
BsiSI	CCGG	2 cut(s)	249, 678
BslFI	GGGAC	2 cut(s)	77, 140
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	607
BsmFI	GGGAC	2 cut(s)	77, 140
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	799
Bsp119I	TTCGAA	1 cut(s)	258
Bsp1286I	GDGCHC	4 cut(s)	34, 97, 164, 170
Bsp143I	GATC	1 cut(s)	222
Bsp1720I	GCTNAGC	3 cut(s)	80, 143, 244
BspACI	CCGC	5 cut(s)	43, 106, 291, 634, 796
BspANI	GGCC	1 cut(s)	799
BspCNI	CTCAG	3 cut(s)	81, 93, 156
BspFNI	CGCG	2 cut(s)	45, 108
BspLI	GGNNCC	1 cut(s)	690
BspQI	GCTCTTC	2 cut(s)	39, 102
BspT104I	TTCGAA	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	688
BsrBI	CCGCTC	1 cut(s)	634
BsrDI	GCAATG	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	209, 625
BssAI	RCCGGY	1 cut(s)	248
BssMI	GATC	1 cut(s)	222
BssNI	GRCGYC	3 cut(s)	72, 135, 309
BssSI	CACGAG	1 cut(s)	163
Bst2BI	CACGAG	1 cut(s)	163
Bst2UI	CCWGG	2 cut(s)	76, 139
Bst4CI	ACNGT	2 cut(s)	269, 850
Bst6I	CTCTTC	2 cut(s)	39, 102
BstACI	GRCGYC	3 cut(s)	72, 135, 309
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	3 cut(s)	170, 250, 457
BstDEI	CTNAG	4 cut(s)	80, 89, 143, 244
BstF5I	GGATG	2 cut(s)	556, 757
BstFNI	CGCG	2 cut(s)	45, 108
BstHHI	GCGC	2 cut(s)	60, 123
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	249, 762
BstNI	CCWGG	2 cut(s)	76, 139
BstSCI	CCNGG	2 cut(s)	74, 137
BstUI	CGCG	2 cut(s)	45, 108
BstV1I	GCAGC	2 cut(s)	239, 310
BstV2I	GAAGAC	1 cut(s)	844
BstXI	CCANNNNNNTGG	1 cut(s)	670
BsuRI	GGCC	1 cut(s)	799
BtgZI	GCGATG	2 cut(s)	60, 123
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	556, 757
BtsIMutI	CAGTG	2 cut(s)	216, 873
Cac8I	GCNNGC	3 cut(s)	170, 250, 457
CfoI	GCGC	2 cut(s)	60, 123
Cfr10I	RCCGGY	1 cut(s)	248
CseI	GACGC	2 cut(s)	80, 143
CviAII	CATG	4 cut(s)	67, 130, 539, 817
DdeI	CTNAG	4 cut(s)	80, 89, 143, 244
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
DraI	TTTAAA	1 cut(s)	834
Eam1104I	CTCTTC	2 cut(s)	39, 102
EarI	CTCTTC	2 cut(s)	39, 102
Ecl136II	GAGCTC	3 cut(s)	32, 95, 168
Eco24I	GRGCYC	3 cut(s)	34, 97, 170
Eco53kI	GAGCTC	3 cut(s)	32, 95, 168
Eco57I	CTGAAG	2 cut(s)	223, 413
EcoICRI	GAGCTC	3 cut(s)	32, 95, 168
EcoRII	CCWGG	2 cut(s)	74, 137
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	3 cut(s)	34, 97, 170
FaeI	CATG	4 cut(s)	70, 133, 542, 820
FaiI	YATR	9 cut(s)	68, 131, 206, 540, 606, 627, 683, 818, 829
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FaqI	GGGAC	2 cut(s)	77, 140
FatI	CATG	4 cut(s)	66, 129, 538, 816
FauI	CCCGC	1 cut(s)	627
Fnu4HI	GCNGC	4 cut(s)	253, 291, 324, 797
FokI	GGATG	2 cut(s)	543, 764
FriOI	GRGCYC	3 cut(s)	34, 97, 170
Fsp4HI	GCNGC	4 cut(s)	253, 291, 324, 797
FspBI	CTAG	2 cut(s)	398, 704
FspI	TGCGCA	2 cut(s)	59, 122
GlaI	GCGC	2 cut(s)	59, 122
GluI	GCNGC	4 cut(s)	253, 291, 324, 797
HaeIII	GGCC	1 cut(s)	799
HapII	CCGG	2 cut(s)	249, 678
HgaI	GACGC	2 cut(s)	80, 143
HhaI	GCGC	2 cut(s)	60, 123
Hin1I	GRCGYC	3 cut(s)	72, 135, 309
Hin1II	CATG	4 cut(s)	70, 133, 542, 820
Hin6I	GCGC	2 cut(s)	58, 121
HinP1I	GCGC	2 cut(s)	58, 121
HinfI	GANTC	4 cut(s)	155, 394, 513, 674
HpaII	CCGG	2 cut(s)	249, 678
HphI	GGTGA	3 cut(s)	272, 289, 835
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	2 cut(s)	90, 222
Hpy188III	TCNNGA	5 cut(s)	152, 398, 473, 572, 704
Hpy8I	GTNNAC	1 cut(s)	272
Hpy99I	CGWCG	4 cut(s)	10, 308, 311, 314
HpyAV	CCTTC	1 cut(s)	772
HpyCH4III	ACNGT	2 cut(s)	269, 850
HpyCH4IV	ACGT	2 cut(s)	309, 351
HpyCH4V	TGCA	4 cut(s)	204, 542, 564, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	249, 762
HpyF3I	CTNAG	4 cut(s)	80, 89, 143, 244
HpySE526I	ACGT	2 cut(s)	309, 351
Hsp92I	GRCGYC	3 cut(s)	72, 135, 309
Hsp92II	CATG	4 cut(s)	70, 133, 542, 820
HspAI	GCGC	2 cut(s)	58, 121
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	222
LguI	GCTCTTC	2 cut(s)	39, 102
LmnI	GCTCC	2 cut(s)	177, 424
Lsp1109I	GCAGC	2 cut(s)	239, 310
LweI	GCATC	2 cut(s)	724, 730
MaeI	CTAG	2 cut(s)	398, 704
MaeII	ACGT	2 cut(s)	309, 351
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	1 cut(s)	224
MbiI	CCGCTC	1 cut(s)	634
MboI	GATC	1 cut(s)	222
MboII	GAAGA	9 cut(s)	26, 29, 89, 92, 229, 592, 650, 743, 844
MfeI	CAATTG	1 cut(s)	711
MhlI	GDGCHC	4 cut(s)	34, 97, 164, 170
MluCI	AATT	5 cut(s)	368, 411, 521, 711, 759
MlyI	GAGTC	1 cut(s)	522
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	8 cut(s)	15, 220, 329, 340, 415, 520, 579, 877
Mph1103I	ATGCAT	1 cut(s)	544
MroNI	GCCGGC	1 cut(s)	248
MseI	TTAA	3 cut(s)	410, 545, 833
MslI	CAYNNNNRTG	2 cut(s)	209, 686
MspA1I	CMGCKG	1 cut(s)	796
MspI	CCGG	2 cut(s)	249, 678
MspR9I	CCNGG	2 cut(s)	76, 139
MunI	CAATTG	1 cut(s)	711
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	2 cut(s)	76, 139
MvnI	CGCG	2 cut(s)	45, 108
MwoI	GCNNNNNNNGC	2 cut(s)	249, 762
NaeI	GCCGGC	1 cut(s)	250
NdeII	GATC	1 cut(s)	222
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	4 cut(s)	70, 133, 542, 820
NlaIV	GGNNCC	1 cut(s)	690
NmuCI	GTSAC	1 cut(s)	278
NsbI	TGCGCA	2 cut(s)	59, 122
NsiI	ATGCAT	1 cut(s)	544
NspV	TTCGAA	1 cut(s)	258
PciSI	GCTCTTC	2 cut(s)	39, 102
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	1 cut(s)	593
PdiI	GCCGGC	1 cut(s)	250
PfeI	GAWTC	3 cut(s)	155, 394, 674
PflFI	GACNNNGTC	1 cut(s)	308
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	4 cut(s)	254, 292, 325, 798
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Psp124BI	GAGCTC	3 cut(s)	34, 97, 170
Psp6I	CCWGG	2 cut(s)	74, 137
PspGI	CCWGG	2 cut(s)	74, 137
PspN4I	GGNNCC	1 cut(s)	690
PsyI	GACNNNGTC	1 cut(s)	308
RseI	CAYNNNNRTG	2 cut(s)	209, 686
SacI	GAGCTC	3 cut(s)	34, 97, 170
SapI	GCTCTTC	2 cut(s)	39, 102
SaqAI	TTAA	3 cut(s)	410, 545, 833
SatI	GCNGC	4 cut(s)	253, 291, 324, 797
Sau3AI	GATC	1 cut(s)	222
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	2 cut(s)	76, 139
SduI	GDGCHC	4 cut(s)	34, 97, 164, 170
SfaNI	GCATC	2 cut(s)	724, 730
SfuI	TTCGAA	1 cut(s)	258
SmiMI	CAYNNNNRTG	2 cut(s)	209, 686
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	5 cut(s)	368, 411, 521, 711, 759
SsiI	CCGC	5 cut(s)	43, 106, 291, 634, 796
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	2 cut(s)	398, 704
SstI	GAGCTC	3 cut(s)	34, 97, 170
StyD4I	CCNGG	2 cut(s)	74, 137
TaaI	ACNGT	2 cut(s)	269, 850
TaiI	ACGT	2 cut(s)	312, 354
TaqI	TCGA	5 cut(s)	158, 225, 258, 392, 882
TasI	AATT	5 cut(s)	368, 411, 521, 711, 759
TauI	GCSGC	2 cut(s)	293, 799
TfiI	GAWTC	3 cut(s)	155, 394, 674
Tru1I	TTAA	3 cut(s)	410, 545, 833
Tru9I	TTAA	3 cut(s)	410, 545, 833
TscAI	CASTG	2 cut(s)	216, 880
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	2 cut(s)	252, 323
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	4 cut(s)	223, 545, 711, 786
TspRI	CASTG	2 cut(s)	216, 880
Tth111I	GACNNNGTC	1 cut(s)	308
Van91I	CCANNNNNTGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	521
XbaI	TCTAGA	2 cut(s)	397, 703
XspI	CTAG	2 cut(s)	398, 704
ZraI	GACGTC	1 cut(s)	310
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.