Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Forward (+)

59774308 .. 59776827

Gene Structure 2520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019993

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGACGACGACGAACACCAAGAGGCAGAGAGCTCTTCTTCTCCGCGATCTTCTGTTGAGCAGGGACATGGACGCCAGGCTCAGCTTTCTGGATTCGAGCACGAGCTCGCTCCAAATCGGCGAGAAGCTGTGTGCGTTGTGCATACCGGTGGTTGGTCTGATCGAGGCTTTCATCTTCAGCTTAGCCGGCTGCTTCGAACAACACCGTCCACGTCGTCACCACCGAGCCGCTTTCACCCACGACGACGTCGTTCGCCTCGCTGCCACCTCCCCATTTAGTGTAAATGAGGTGGAAGCATTGCGTGAATTGTTCAACAAGTTGAGTAGTTCGATTCTAGATGATGGCTTGATTCACAAGGAGGAGCTTCAGTTGGCTTTGTTCAAAACTCATGCGGGCGAAAATCTTTTTCTTGATAGGGTATTTGATGTTTTTGACGAAAAGAAAAATGGAGTTATTGAATTTGAGGAGTTTATCCATGCATTAAGTGTATTTCATCCCTGCACTCCTCTTGAACAGAAGATTGACTTTGCATTCAGGTTGTATGATTTGAGACAGACTGGATATATTGAGCGGGAAGAAGTTAGGCAAATGGTAGTTGCCACTTTGTTGGAATCCGACATACAGGTGCCGGATGAAACTCTAGAAACAATTGTGGATAAGACATTTGAAGATGCTGATGCTGATAAGGATGGCAAAATTAGCAACGATGAGTGGAAGGCTTTTGTATTTCAGCGGCCTACACTCGTAAAGAACATGACACTTCCATATTTAAAGGACATCACCACAGTCTTCCCAAGTTTTGTTTTCAACACTGAAGTCGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

276

Amino Acids

31.57

Weight (kDa)

4.95

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	171 - 237	5.5e-10	EF-hand domain pair
EF-hand_5	PF13202	218 - 242	2.8e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	625
AccBSI	CCGCTC	1 cut(s)	571
AccII	CGCG	1 cut(s)	45
AciI	CCGC	5 cut(s)	43, 228, 392, 571, 733
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	2 cut(s)	160, 350
AcyI	GRCGYC	2 cut(s)	72, 246
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgeI	ACCGGT	1 cut(s)	145
AgsI	TTSAA	6 cut(s)	313, 382, 458, 512, 668, 808
AjiI	CACGTC	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	6 cut(s)	32, 84, 105, 127, 180, 364
AluI	AGCT	6 cut(s)	32, 84, 105, 127, 180, 364
Alw21I	GWGCWC	3 cut(s)	34, 101, 107
Alw26I	GTCTC	1 cut(s)	544
AoxI	GGCC	1 cut(s)	734
ApeKI	GCWGC	2 cut(s)	189, 260
ApoI	RAATTY	1 cut(s)	458
AsiGI	ACCGGT	1 cut(s)	145
AsuHPI	GGTGA	3 cut(s)	209, 226, 772
AsuII	TTCGAA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	2 cut(s)	34, 107
BauI	CACGAG	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	781
Bbv12I	GWGCWC	3 cut(s)	34, 101, 107
BbvI	GCAGC	2 cut(s)	176, 247
BccI	CCATC	2 cut(s)	335, 683
BciT130I	CCWGG	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	2 cut(s)	335, 641
BisI	GCNGC	4 cut(s)	190, 228, 261, 734
BlpI	GCTNAGC	2 cut(s)	80, 181
BlsI	GCNGC	4 cut(s)	191, 229, 262, 735
Bme1390I	CCNGG	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	627
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	661, 667
BpiI	GAAGAC	1 cut(s)	781
Bpu1102I	GCTNAGC	2 cut(s)	80, 181
Bpu14I	TTCGAA	1 cut(s)	195
BsaHI	GRCGYC	2 cut(s)	72, 246
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse118I	RCCGGY	2 cut(s)	145, 185
Bse1I	ACTGG	1 cut(s)	562
Bse3DI	GCAATG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	76
BseGI	GGATG	3 cut(s)	493, 637, 694
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMI	GCAATG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	3 cut(s)	374, 479, 495
BseXI	GCAGC	2 cut(s)	176, 247
BsgI	GTGCAG	1 cut(s)	484
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	736
BshNI	GGYRCC	1 cut(s)	625
BshTI	ACCGGT	1 cut(s)	145
BsiHKAI	GWGCWC	3 cut(s)	34, 101, 107
BsiSI	CCGG	3 cut(s)	146, 186, 629
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	1 cut(s)	736
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	3 cut(s)	34, 101, 107
Bsp143I	GATC	2 cut(s)	46, 159
Bsp1720I	GCTNAGC	2 cut(s)	80, 181
BspACI	CCGC	5 cut(s)	43, 228, 392, 571, 733
BspANI	GGCC	1 cut(s)	736
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	627
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	625
BsrBI	CCGCTC	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	296
BsrFI	RCCGGY	2 cut(s)	145, 185
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	2 cut(s)	145, 185
BssMI	GATC	2 cut(s)	46, 159
BssNI	GRCGYC	2 cut(s)	72, 246
BssSI	CACGAG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	206, 787
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	2 cut(s)	72, 246
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	107, 187, 394
BstDEI	CTNAG	2 cut(s)	80, 181
BstF5I	GGATG	3 cut(s)	493, 637, 694
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	2 cut(s)	49, 162
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	2 cut(s)	46, 159
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 699
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	176, 247
BstV2I	GAAGAC	1 cut(s)	781
BstXI	CCANNNNNNTGG	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	736
BtrI	CACGTC	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	493, 637, 694
BtsIMutI	CAGTG	1 cut(s)	810
Cac8I	GCNNGC	3 cut(s)	107, 187, 394
Cfr10I	RCCGGY	2 cut(s)	145, 185
CseI	GACGC	1 cut(s)	80
CspAI	ACCGGT	1 cut(s)	145
CviAII	CATG	4 cut(s)	67, 389, 476, 754
DdeI	CTNAG	2 cut(s)	80, 181
DpnI	GATC	2 cut(s)	48, 161
DpnII	GATC	2 cut(s)	46, 159
DraI	TTTAAA	1 cut(s)	771
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	2 cut(s)	32, 105
Eco24I	GRGCYC	2 cut(s)	34, 107
Eco53kI	GAGCTC	2 cut(s)	32, 105
Eco57I	CTGAAG	2 cut(s)	160, 350
EcoICRI	GAGCTC	2 cut(s)	32, 105
EcoRII	CCWGG	1 cut(s)	74
EcoT22I	ATGCAT	1 cut(s)	481
EcoT38I	GRGCYC	2 cut(s)	34, 107
FaeI	CATG	4 cut(s)	70, 392, 479, 757
FaiI	YATR	9 cut(s)	68, 143, 390, 477, 543, 564, 620, 755, 766
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	4 cut(s)	66, 388, 475, 753
FauI	CCCGC	2 cut(s)	385, 564
Fnu4HI	GCNGC	4 cut(s)	190, 228, 261, 734
FokI	GGATG	3 cut(s)	480, 644, 701
FriOI	GRGCYC	2 cut(s)	34, 107
Fsp4HI	GCNGC	4 cut(s)	190, 228, 261, 734
FspBI	CTAG	2 cut(s)	335, 641
GluI	GCNGC	4 cut(s)	190, 228, 261, 734
HaeIII	GGCC	1 cut(s)	736
HapII	CCGG	3 cut(s)	146, 186, 629
HgaI	GACGC	1 cut(s)	80
Hin1I	GRCGYC	2 cut(s)	72, 246
Hin1II	CATG	4 cut(s)	70, 392, 479, 757
HinfI	GANTC	4 cut(s)	92, 331, 349, 611
HpaII	CCGG	3 cut(s)	146, 186, 629
HphI	GGTGA	3 cut(s)	209, 226, 772
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	2 cut(s)	159, 616
Hpy188III	TCNNGA	5 cut(s)	89, 335, 410, 509, 641
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	6 cut(s)	10, 13, 216, 245, 248, 251
HpyAV	CCTTC	1 cut(s)	709
HpyCH4III	ACNGT	2 cut(s)	206, 787
HpyCH4IV	ACGT	2 cut(s)	211, 246
HpyCH4V	TGCA	4 cut(s)	141, 479, 501, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 699
HpyF3I	CTNAG	2 cut(s)	80, 181
HpySE526I	ACGT	2 cut(s)	211, 246
Hsp92I	GRCGYC	2 cut(s)	72, 246
Hsp92II	CATG	4 cut(s)	70, 392, 479, 757
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	46, 159
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	114, 361
Lsp1109I	GCAGC	2 cut(s)	176, 247
LweI	GCATC	2 cut(s)	661, 667
MaeI	CTAG	2 cut(s)	335, 641
MaeII	ACGT	2 cut(s)	211, 246
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	2 cut(s)	48, 161
MbiI	CCGCTC	1 cut(s)	571
MboI	GATC	2 cut(s)	46, 159
MboII	GAAGA	8 cut(s)	26, 29, 41, 166, 529, 587, 680, 781
MfeI	CAATTG	1 cut(s)	648
MhlI	GDGCHC	3 cut(s)	34, 101, 107
MluCI	AATT	4 cut(s)	305, 458, 648, 696
MmeI	TCCRAC	2 cut(s)	588, 639
MnlI	CCTC	9 cut(s)	15, 157, 266, 277, 280, 352, 457, 516, 814
Mph1103I	ATGCAT	1 cut(s)	481
MroNI	GCCGGC	1 cut(s)	185
MseI	TTAA	2 cut(s)	482, 770
MslI	CAYNNNNRTG	2 cut(s)	146, 623
MspA1I	CMGCKG	1 cut(s)	733
MspI	CCGG	3 cut(s)	146, 186, 629
MspR9I	CCNGG	1 cut(s)	76
MunI	CAATTG	1 cut(s)	648
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	186, 699
NaeI	GCCGGC	1 cut(s)	187
NdeII	GATC	2 cut(s)	46, 159
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	4 cut(s)	70, 392, 479, 757
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	481
NspV	TTCGAA	1 cut(s)	195
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	220, 246
PctI	GAATGC	1 cut(s)	530
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	4 cut(s)	92, 331, 349, 611
PflFI	GACNNNGTC	1 cut(s)	245
PinAI	ACCGGT	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	191, 229, 262, 735
Psp124BI	GAGCTC	2 cut(s)	34, 107
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	627
PsyI	GACNNNGTC	1 cut(s)	245
RseI	CAYNNNNRTG	2 cut(s)	146, 623
SacI	GAGCTC	2 cut(s)	34, 107
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	482, 770
SatI	GCNGC	4 cut(s)	190, 228, 261, 734
Sau3AI	GATC	2 cut(s)	46, 159
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	3 cut(s)	34, 101, 107
SfaNI	GCATC	2 cut(s)	661, 667
SfuI	TTCGAA	1 cut(s)	195
SmiMI	CAYNNNNRTG	2 cut(s)	146, 623
Sse9I	AATT	4 cut(s)	305, 458, 648, 696
SsiI	CCGC	5 cut(s)	43, 228, 392, 571, 733
SspMI	CTAG	2 cut(s)	335, 641
SstI	GAGCTC	2 cut(s)	34, 107
StyD4I	CCNGG	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	206, 787
TaiI	ACGT	2 cut(s)	214, 249
TaqI	TCGA	5 cut(s)	95, 162, 195, 329, 819
TasI	AATT	4 cut(s)	305, 458, 648, 696
TauI	GCSGC	2 cut(s)	230, 736
TfiI	GAWTC	4 cut(s)	92, 331, 349, 611
Tru1I	TTAA	2 cut(s)	482, 770
Tru9I	TTAA	2 cut(s)	482, 770
TscAI	CASTG	1 cut(s)	817
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	2 cut(s)	189, 260
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	3 cut(s)	160, 482, 648
TspRI	CASTG	1 cut(s)	817
Tth111I	GACNNNGTC	1 cut(s)	245
XapI	RAATTY	1 cut(s)	458
XbaI	TCTAGA	2 cut(s)	334, 640
XspI	CTAG	2 cut(s)	335, 641
ZraI	GACGTC	1 cut(s)	247
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.