Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Reverse (-)

3597840 .. 3603251

Gene Structure 5412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G051100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGACGAGCAATGAGAGACCTAGATTGTTTCTCCGTGATCTTCTATTTCGTATAGAGAATTCTGCGTATACGGAGAGTTCGAGCTCGCTGATGCTAGGCGAGAAGCTGTGCGCGGTGTTCAAACCACTGATTGATCTCGTTGATGCTTTCATCTTCAGCTTAATTGGTTGCTTCGATCGACAACGGCCTCATCAGCGCCTCTCCTACACTTACGACGACATCGTTCGCCTTGCTGCCAGCTCTCCATTTACTGTAAATGAGGTGGAAGCATTGCGCGAATTGTTCAACCAGTTGAGTAGTTCGATTCTTGATGATGGGTTAATTCACAAGGAGGAGCTCAGGTTGGCGCTATTCAAAACTCCAGCAGGTGAAAATCTTTTCCTGGATAGGGTGTTCGATGTTTTCGACGAAAAGAAAAATGGCGTGATTGAATTCGAGGGGTTTGTCCATGCACTTAGTGTTTTTCATCCATGTGCTCCTCTTGAAGACAAGATTGATTTCGCATTTAGGTTGTATGATTTGAGACAAACTGGATATATTGAGCGGGAAGAAGTAAGTATCTTGGTCAGGCAAATGGTAGTTGCCACTTTGTTGGAATCTGGCATACATGTGCCAGATGAAACTCTTGAAGCTATCGTCGATAAGACATTTGCAGATGCTGATTCTGACAAGGATGATAAAATTAGCAAAGACGAATGGAAAGCTTTTGCTCTTCAGCACCCAACACTTCTAAAGAACATGACGCTTCCACATTTAAAGGACATCACGACAGTCTTCCCGAGCTTTATTTTCAACACTGAAGTCGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

271

Amino Acids

30.96

Weight (kDa)

4.78

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	356
Acc36I	ACCTGC	1 cut(s)	356
AccBSI	CCGCTC	1 cut(s)	544
AccI	GTMKAC	1 cut(s)	68
AccII	CGCG	2 cut(s)	113, 276
AciI	CCGC	2 cut(s)	113, 544
AcsI	RAATTY	2 cut(s)	58, 431
AcuI	CTGAAG	2 cut(s)	139, 698
AdeI	CACNNNGTG	1 cut(s)	458
AfiI	CCNNNNNNNGG	1 cut(s)	388
AflIII	ACRYGT	1 cut(s)	607
AgsI	TTSAA	7 cut(s)	121, 286, 355, 431, 485, 629, 793
AjnI	CCWGG	1 cut(s)	381
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
AluBI	AGCT	8 cut(s)	84, 106, 159, 240, 337, 632, 704, 783
AluI	AGCT	8 cut(s)	84, 106, 159, 240, 337, 632, 704, 783
Alw21I	GWGCWC	3 cut(s)	86, 339, 478
Alw26I	GTCTC	2 cut(s)	10, 517
AlwNI	CAGNNNCTG	1 cut(s)	659
Ama87I	CYCGRG	1 cut(s)	778
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	2 cut(s)	58, 431
AspLEI	GCGC	4 cut(s)	113, 198, 276, 349
AsuHPI	GGTGA	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	778
BanII	GRGCYC	2 cut(s)	86, 339
BbsI	GAAGAC	2 cut(s)	492, 766
Bbv12I	GWGCWC	3 cut(s)	86, 339, 478
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	383
BcoDI	GTCTC	2 cut(s)	10, 517
BfaI	CTAG	2 cut(s)	21, 95
BfoI	RGCGCY	2 cut(s)	199, 350
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	778
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	3 cut(s)	81, 133, 646
BpiI	GAAGAC	2 cut(s)	492, 766
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse1I	ACTGG	2 cut(s)	289, 535
Bse3DI	GCAATG	2 cut(s)	16, 269
BseBI	CCWGG	1 cut(s)	383
BseGI	GGATG	2 cut(s)	466, 679
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMI	GCAATG	2 cut(s)	16, 269
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	2 cut(s)	289, 535
BseRI	GAGGAG	2 cut(s)	347, 468
BseXI	GCAGC	1 cut(s)	220
Bsh1236I	CGCG	2 cut(s)	113, 276
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	3 cut(s)	86, 339, 478
BsiHKCI	CYCGRG	1 cut(s)	778
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	2 cut(s)	10, 517
BsnI	GGCC	1 cut(s)	187
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	778
Bsp1286I	GDGCHC	3 cut(s)	86, 339, 478
Bsp143I	GATC	3 cut(s)	37, 133, 175
BspACI	CCGC	2 cut(s)	113, 544
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	351
BspFNI	CGCG	2 cut(s)	113, 276
BspMI	ACCTGC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	717
BspTNI	GGTCTC	1 cut(s)	10
BsrBI	CCGCTC	1 cut(s)	544
BsrDI	GCAATG	2 cut(s)	16, 269
BsrI	ACTGG	2 cut(s)	289, 535
BssMI	GATC	3 cut(s)	37, 133, 175
BssNAI	GTATAC	1 cut(s)	69
Bst1107I	GTATAC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	253, 772
Bst6I	CTCTTC	1 cut(s)	717
BstC8I	GCNNGC	2 cut(s)	86, 238
BstDEI	CTNAG	2 cut(s)	338, 455
BstF5I	GGATG	2 cut(s)	466, 679
BstFNI	CGCG	2 cut(s)	113, 276
BstH2I	RGCGCY	2 cut(s)	199, 350
BstHHI	GCGC	4 cut(s)	113, 198, 276, 349
BstKTI	GATC	3 cut(s)	40, 136, 178
BstMAI	GTCTC	2 cut(s)	10, 517
BstMBI	GATC	3 cut(s)	37, 133, 175
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	1 cut(s)	381
BstUI	CGCG	2 cut(s)	113, 276
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	2 cut(s)	492, 766
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstZ17I	GTATAC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	466, 679
BtsIMutI	CAGTG	2 cut(s)	125, 795
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	86, 238
CaiI	CAGNNNCTG	1 cut(s)	659
CfoI	GCGC	4 cut(s)	113, 198, 276, 349
CseI	GACGC	1 cut(s)	751
CviAII	CATG	4 cut(s)	449, 471, 608, 739
CviJI	RGCY	9 cut(s)	84, 106, 159, 187, 240, 337, 632, 704, 783
CviKI_1	RGCY	9 cut(s)	84, 106, 159, 187, 240, 337, 632, 704, 783
DdeI	CTNAG	2 cut(s)	338, 455
DpnI	GATC	3 cut(s)	39, 135, 177
DpnII	GATC	3 cut(s)	37, 133, 175
DraI	TTTAAA	1 cut(s)	756
DraIII	CACNNNGTG	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Ecl136II	GAGCTC	2 cut(s)	84, 337
Eco24I	GRGCYC	2 cut(s)	86, 339
Eco31I	GGTCTC	1 cut(s)	10
Eco53kI	GAGCTC	2 cut(s)	84, 337
Eco57I	CTGAAG	2 cut(s)	139, 698
Eco88I	CYCGRG	1 cut(s)	778
EcoICRI	GAGCTC	2 cut(s)	84, 337
EcoRI	GAATTC	2 cut(s)	58, 431
EcoRII	CCWGG	1 cut(s)	381
EcoT38I	GRGCYC	2 cut(s)	86, 339
FaeI	CATG	4 cut(s)	452, 474, 611, 742
FaiI	YATR	9 cut(s)	53, 69, 450, 472, 516, 537, 605, 609, 740
FatI	CATG	4 cut(s)	448, 470, 607, 738
FauI	CCCGC	1 cut(s)	537
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	2 cut(s)	453, 686
FriOI	GRGCYC	2 cut(s)	86, 339
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	21, 95
GlaI	GCGC	4 cut(s)	112, 197, 275, 348
GluI	GCNGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	345
HaeII	RGCGCY	2 cut(s)	199, 350
HaeIII	GGCC	1 cut(s)	187
HgaI	GACGC	1 cut(s)	751
HhaI	GCGC	4 cut(s)	113, 198, 276, 349
Hin1II	CATG	4 cut(s)	452, 474, 611, 742
Hin6I	GCGC	4 cut(s)	111, 196, 274, 347
HinP1I	GCGC	4 cut(s)	111, 196, 274, 347
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	3 cut(s)	304, 596, 662
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	667
Hpy188III	TCNNGA	5 cut(s)	308, 482, 626, 766, 778
Hpy8I	GTNNAC	1 cut(s)	69
Hpy99I	CGWCG	3 cut(s)	218, 410, 641
HpyCH4III	ACNGT	2 cut(s)	253, 772
HpyCH4V	TGCA	2 cut(s)	452, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	2 cut(s)	338, 455
Hsp92II	CATG	4 cut(s)	452, 474, 611, 742
HspAI	GCGC	4 cut(s)	111, 196, 274, 347
Kzo9I	GATC	3 cut(s)	37, 133, 175
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	2 cut(s)	334, 481
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	3 cut(s)	81, 133, 646
MaeI	CTAG	2 cut(s)	21, 95
MalI	GATC	3 cut(s)	39, 135, 177
MbiI	CCGCTC	1 cut(s)	544
MboI	GATC	3 cut(s)	37, 133, 175
MboII	GAAGA	6 cut(s)	32, 145, 497, 560, 704, 766
MhlI	GDGCHC	3 cut(s)	86, 339, 478
MluCI	AATT	6 cut(s)	58, 162, 278, 321, 431, 681
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	6 cut(s)	198, 209, 253, 325, 430, 489
MseI	TTAA	3 cut(s)	161, 320, 755
MslI	CAYNNNNRTG	2 cut(s)	471, 608
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	2 cut(s)	113, 276
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	3 cut(s)	37, 133, 175
NlaIII	CATG	4 cut(s)	452, 474, 611, 742
NspI	RCATGY	1 cut(s)	611
PaqCI	CACCTGC	1 cut(s)	356
PciI	ACATGT	1 cut(s)	607
PciSI	GCTCTTC	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	3 cut(s)	77, 219, 402
PfeI	GAWTC	3 cut(s)	304, 596, 662
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	235
Ple19I	CGATCG	1 cut(s)	178
PscI	ACATGT	1 cut(s)	607
Psp124BI	GAGCTC	2 cut(s)	86, 339
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PstNI	CAGNNNCTG	1 cut(s)	659
PvuI	CGATCG	1 cut(s)	178
RseI	CAYNNNNRTG	2 cut(s)	471, 608
SacI	GAGCTC	2 cut(s)	86, 339
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	3 cut(s)	161, 320, 755
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	3 cut(s)	37, 133, 175
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	3 cut(s)	86, 339, 478
SfaNI	GCATC	3 cut(s)	81, 133, 646
SmiMI	CAYNNNNRTG	2 cut(s)	471, 608
Sse9I	AATT	6 cut(s)	58, 162, 278, 321, 431, 681
SsiI	CCGC	2 cut(s)	113, 544
SspMI	CTAG	2 cut(s)	21, 95
SstI	GAGCTC	2 cut(s)	86, 339
StyD4I	CCNGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	253, 772
TaqI	TCGA	9 cut(s)	80, 174, 178, 302, 396, 405, 435, 639, 804
TasI	AATT	6 cut(s)	58, 162, 278, 321, 431, 681
TfiI	GAWTC	3 cut(s)	304, 596, 662
Tru1I	TTAA	3 cut(s)	161, 320, 755
Tru9I	TTAA	3 cut(s)	161, 320, 755
TscAI	CASTG	2 cut(s)	132, 802
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	139, 455, 633
TspGWI	ACGGA	2 cut(s)	23, 86
TspRI	CASTG	2 cut(s)	132, 802
XapI	RAATTY	2 cut(s)	58, 431
XceI	RCATGY	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	68
XspI	CTAG	2 cut(s)	21, 95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.