Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000395.1

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Reverse (-)

62845 .. 64730

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000395.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgagcacaccgcacacgcaagttgtccagccaggaacgtttgaaaagttagagtcacatgccggtaaagaacaaaccaatcacgcacagcatgttcactcctccggtcacagccgattcagattaaagagaaaccgcctccgggctcgggcgtcatcgatcatagaggtgttggttctggccgtcaccggttgcttcacttaccggcctcgccctgtcaaacgtgctcacgctttcggagacgtgactcagctcgcccgggaaactcgatttagtgttaatgagctggaggcgttgtatgagctgtttaagaagttgagtagctcgatcatcgatgacgggttgattcacaaggaagagcttcaattagcactgttccaaactccccagggcgaaaatcttttccttgaccgggtttttgatgtgtttgacgagaagaaaaatggtgtcattgaattcgatgagttcattcacgcgctcaatgtgtttcatccctatgctcctatacaggagaagattgattttgcatttaggctgtatgatctgagacatactggattcattgagcgtgaagaagttaagcaaatggtgattgctatactgatggagtctgacacgatactgtcagatgatcttctggagtctatcattgataagacatttgatgacgctgatgccgacaaggatgggagaatcaataaacaagaatggaaggcttttgtgcttcgacatccagcccttctgaaaaacatgactcttccttatttgaaggacatcaccacaatgtatccaagtttcattttcaacaccgaagtcgaagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009628 GO:0009651 GO:0009705 GO:0010959 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0042538 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

274

Amino Acids

31.71

Weight (kDa)

5.75

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	476
AciI	CCGC	2 cut(s)	11, 136
AclI	AACGTT	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	455
AcyI	GRCGYC	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	142, 148, 412
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	5 cut(s)	44, 365, 455, 769, 805
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	2 cut(s)	31, 387
AluBI	AGCT	5 cut(s)	253, 286, 304, 324, 361
AluI	AGCT	5 cut(s)	253, 286, 304, 324, 361
Alw21I	GWGCWC	2 cut(s)	8, 229
Alw26I	GTCTC	2 cut(s)	234, 541
Ama87I	CYCGRG	2 cut(s)	147, 258
AoxI	GGCC	2 cut(s)	180, 206
ApoI	RAATTY	1 cut(s)	455
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
AsiGI	ACCGGT	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	478
AsuC2I	CCSGG	4 cut(s)	143, 259, 260, 413
AsuHPI	GGTGA	3 cut(s)	178, 601, 769
AvaI	CYCGRG	2 cut(s)	147, 258
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	2 cut(s)	8, 229
BccI	CCATC	2 cut(s)	598, 680
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	33, 389
BciVI	GTATCC	1 cut(s)	798
BcnI	CCSGG	4 cut(s)	143, 259, 260, 413
BcoDI	GTCTC	2 cut(s)	234, 541
BfuI	GTATCC	1 cut(s)	798
Bme1390I	CCNGG	6 cut(s)	33, 143, 259, 260, 389, 413
BmeT110I	CYCGRG	2 cut(s)	147, 258
BmgBI	CACGTC	1 cut(s)	244
BmrFI	CCNGG	6 cut(s)	33, 143, 259, 260, 389, 413
BmsI	GCATC	1 cut(s)	664
BpmI	CTGGAG	2 cut(s)	308, 659
BpuMI	CCSGG	4 cut(s)	143, 259, 260, 413
Bsa29I	ATCGAT	2 cut(s)	158, 333
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	258, 387, 388
BsaWI	WCCGGW	2 cut(s)	104, 188
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 148, 412
Bse118I	RCCGGY	3 cut(s)	62, 188, 204
Bse1I	ACTGG	1 cut(s)	559
BseBI	CCWGG	2 cut(s)	33, 389
BseCI	ATCGAT	2 cut(s)	158, 333
BseDI	CCNNGG	3 cut(s)	258, 387, 388
BseGI	GGATG	3 cut(s)	490, 691, 730
BseLI	CCNNNNNNNGG	3 cut(s)	142, 148, 412
BseMII	CTCAG	2 cut(s)	263, 536
BseNI	ACTGG	1 cut(s)	559
BseRI	GAGGAG	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	2 cut(s)	182, 208
BshTI	ACCGGT	1 cut(s)	188
BshVI	ATCGAT	2 cut(s)	158, 333
BsiHKAI	GWGCWC	2 cut(s)	8, 229
BsiHKCI	CYCGRG	2 cut(s)	147, 258
BsiSI	CCGG	7 cut(s)	63, 105, 142, 189, 205, 259, 412
BslI	CCNNNNNNNGG	3 cut(s)	142, 148, 412
BsmAI	GTCTC	2 cut(s)	234, 541
BsmBI	CGTCTC	1 cut(s)	234
BsnI	GGCC	2 cut(s)	182, 208
BsoBI	CYCGRG	2 cut(s)	147, 258
Bsp1286I	GDGCHC	3 cut(s)	8, 148, 229
Bsp143I	GATC	4 cut(s)	159, 327, 541, 631
BspACI	CCGC	2 cut(s)	11, 136
BspANI	GGCC	2 cut(s)	182, 208
BspCNI	CTCAG	2 cut(s)	262, 537
BspDI	ATCGAT	2 cut(s)	158, 333
BspFNI	CGCG	1 cut(s)	476
BspQI	GCTCTTC	1 cut(s)	351
BsrFI	RCCGGY	3 cut(s)	62, 188, 204
BsrI	ACTGG	1 cut(s)	559
BssAI	RCCGGY	3 cut(s)	62, 188, 204
BssECI	CCNNGG	3 cut(s)	258, 387, 388
BssMI	GATC	4 cut(s)	159, 327, 541, 631
BssNI	GRCGYC	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	33, 389
Bst4CI	ACNGT	2 cut(s)	375, 624
Bst6I	CTCTTC	2 cut(s)	351, 762
BstACI	GRCGYC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	249, 545
BstF5I	GGATG	3 cut(s)	490, 691, 730
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	4 cut(s)	162, 330, 544, 634
BstMAI	GTCTC	2 cut(s)	234, 541
BstMBI	GATC	4 cut(s)	159, 327, 541, 631
BstNI	CCWGG	2 cut(s)	33, 389
BstNSI	RCATGY	2 cut(s)	62, 95
BstSCI	CCNGG	6 cut(s)	31, 141, 257, 258, 387, 411
BstUI	CGCG	1 cut(s)	476
Bsu15I	ATCGAT	2 cut(s)	158, 333
BsuI	GTATCC	1 cut(s)	798
BsuRI	GGCC	2 cut(s)	182, 208
BsuTUI	ATCGAT	2 cut(s)	158, 333
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	490, 691, 730
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	255
CfoI	GCGC	1 cut(s)	478
Cfr10I	RCCGGY	3 cut(s)	62, 188, 204
Cfr9I	CCCGGG	1 cut(s)	258
ClaI	ATCGAT	2 cut(s)	158, 333
CseI	GACGC	2 cut(s)	141, 677
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	3 cut(s)	59, 92, 751
DdeI	CTNAG	2 cut(s)	249, 545
DpnI	GATC	4 cut(s)	161, 329, 543, 633
DpnII	GATC	4 cut(s)	159, 327, 541, 631
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	351, 762
EarI	CTCTTC	2 cut(s)	351, 762
Eco24I	GRGCYC	1 cut(s)	148
Eco88I	CYCGRG	2 cut(s)	147, 258
EcoRI	GAATTC	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	31, 387
EcoT38I	GRGCYC	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	3 cut(s)	62, 95, 754
FatI	CATG	3 cut(s)	58, 91, 750
FokI	GGATG	3 cut(s)	477, 698, 717
FriOI	GRGCYC	1 cut(s)	148
GlaI	GCGC	1 cut(s)	477
GsuI	CTGGAG	2 cut(s)	308, 659
HaeIII	GGCC	2 cut(s)	182, 208
HapII	CCGG	7 cut(s)	63, 105, 142, 189, 205, 259, 412
HgaI	GACGC	2 cut(s)	141, 677
HhaI	GCGC	1 cut(s)	478
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	62, 95, 754
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	9 cut(s)	53, 117, 247, 346, 558, 608, 641, 693, 754
HpaII	CCGG	7 cut(s)	63, 105, 142, 189, 205, 259, 412
HphI	GGTGA	3 cut(s)	178, 601, 769
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	6 cut(s)	122, 239, 546, 613, 628, 744
Hpy188III	TCNNGA	1 cut(s)	638
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	706, 749, 763
HpyCH4III	ACNGT	2 cut(s)	375, 624
HpyCH4IV	ACGT	3 cut(s)	38, 223, 243
HpyCH4V	TGCA	1 cut(s)	527
HpyF3I	CTNAG	2 cut(s)	249, 545
HpySE526I	ACGT	3 cut(s)	38, 223, 243
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	62, 95, 754
HspAI	GCGC	1 cut(s)	476
Kzo9I	GATC	4 cut(s)	159, 327, 541, 631
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	505
LweI	GCATC	1 cut(s)	664
MaeII	ACGT	3 cut(s)	38, 223, 243
MaeIII	GTNAC	4 cut(s)	54, 107, 184, 244
MalI	GATC	4 cut(s)	161, 329, 543, 633
MboI	GATC	4 cut(s)	159, 327, 541, 631
MboII	GAAGA	6 cut(s)	368, 448, 526, 584, 626, 749
MhlI	GDGCHC	3 cut(s)	8, 148, 229
MluCI	AATT	2 cut(s)	365, 455
MlyI	GAGTC	5 cut(s)	62, 241, 617, 650, 748
MnlI	CCTC	5 cut(s)	112, 149, 160, 219, 283
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	4 cut(s)	125, 279, 309, 579
MslI	CAYNNNNRTG	3 cut(s)	167, 495, 782
MspI	CCGG	7 cut(s)	63, 105, 142, 189, 205, 259, 412
MspR9I	CCNGG	6 cut(s)	33, 143, 259, 260, 389, 413
MvaI	CCWGG	2 cut(s)	33, 389
MvnI	CGCG	1 cut(s)	476
NciI	CCSGG	4 cut(s)	143, 259, 260, 413
NdeII	GATC	4 cut(s)	159, 327, 541, 631
NlaIII	CATG	3 cut(s)	62, 95, 754
NmuCI	GTSAC	4 cut(s)	54, 107, 184, 244
NspI	RCATGY	2 cut(s)	62, 95
PasI	CCCWGGG	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	675
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	4 cut(s)	117, 346, 558, 693
PinAI	ACCGGT	1 cut(s)	188
PleI	GAGTC	5 cut(s)	61, 241, 616, 649, 748
PpsI	GAGTC	5 cut(s)	61, 241, 616, 649, 748
Psp1406I	AACGTT	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	31, 387
PspGI	CCWGG	2 cut(s)	31, 387
RseI	CAYNNNNRTG	3 cut(s)	167, 495, 782
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	4 cut(s)	125, 279, 309, 579
Sau3AI	GATC	4 cut(s)	159, 327, 541, 631
SchI	GAGTC	5 cut(s)	62, 241, 617, 650, 748
ScrFI	CCNGG	6 cut(s)	33, 143, 259, 260, 389, 413
SduI	GDGCHC	3 cut(s)	8, 148, 229
SetI	ASST	9 cut(s)	41, 171, 226, 246, 255, 288, 306, 326, 363
SfaNI	GCATC	1 cut(s)	664
SmaI	CCCGGG	1 cut(s)	260
SmiMI	CAYNNNNRTG	3 cut(s)	167, 495, 782
Sse9I	AATT	2 cut(s)	365, 455
SsiI	CCGC	2 cut(s)	11, 136
StyD4I	CCNGG	6 cut(s)	31, 141, 257, 258, 387, 411
TaaI	ACNGT	2 cut(s)	375, 624
TaiI	ACGT	3 cut(s)	41, 226, 246
TaqI	TCGA	7 cut(s)	158, 268, 326, 333, 459, 727, 816
TasI	AATT	2 cut(s)	365, 455
TfiI	GAWTC	4 cut(s)	117, 346, 558, 693
Tru1I	TTAA	4 cut(s)	125, 279, 309, 579
Tru9I	TTAA	4 cut(s)	125, 279, 309, 579
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	4 cut(s)	54, 107, 184, 244
Tsp45I	GTSAC	4 cut(s)	54, 107, 184, 244
TspDTI	ATGAA	4 cut(s)	457, 479, 550, 787
TspMI	CCCGGG	1 cut(s)	258
TspRI	CASTG	1 cut(s)	378
XapI	RAATTY	1 cut(s)	455
XceI	RCATGY	2 cut(s)	62, 95
XmaI	CCCGGG	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.