Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Reverse (-)

9279443 .. 9281257

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11150.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTACTCAGTAAATAATACGAATATTTTCGCTTCCTTCTGCATTCACAGGCAAACTCTCTCTCCCTCCCTCTCCCTCCCTCTCCCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTGTGCAAACGCCGATGGCTGAGAGACCCAGATTGCAAATCCGTGACCTTCTATTTCGTATAGATTATTCCGCCTACAGCTTTACGACGAGTTCGAGCTCGCTGAAGATCGGCGAGACTCTCTGTGCGTTGTGCAGACCACTGATTGGCCTGGTCGAGGCTTTCATCTTCAGCTTAGCTGGTTGCTTCGATTGCCACTGTCAACCTCACCGCCTTTCCTTCACCCACGACGACGTCGTTCGACTCGCCGCCACCTCTCCATTTAGTGTGAATGAAGTGGAAGCATTGCGCGAACTGTTTAACAAGTTAAGTAGCTCCATTCTCGACGATGGATTACTTCACAAGGAGGAGCTGAGGTTGGCGCTTTTCAAAACTCTAGCTGGTGAAAATCTTTTTCTTGATAGGGTGTTTGATGTTTTTGACGAAAAGAAAGATGGAGTGATTGAATTTGAGGAGTTTGTCCACGCACTAAGTGTGTTTCATCCGTATGCTTCTCTTGAGGCCAAGATTGATTTCGCATTTAGGTTGTATGATTTGAGGCAAACCGGATACATCGGGCGGGAAGAAGTCCGGCAAATGGTAGTTGCTACTTTGTTGGAATCCGGCATTCAGATGCCGGATGAAACTCTGGAAGCTATCGTAGATAAGGCAAGAATTGTGGATGTTTTAAATTTGTGTTCTTTACCTTTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

270

Amino Acids

30.31

Weight (kDa)

5.1

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	351
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccII	CGCG	1 cut(s)	405
AciI	CCGC	4 cut(s)	186, 325, 363, 673
AcsI	RAATTY	2 cut(s)	560, 784
AcuI	CTGAAG	2 cut(s)	239, 268
AcyI	GRCGYC	1 cut(s)	348
AdeI	CACNNNGTG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	260, 271, 691
AgsI	TTSAA	2 cut(s)	484, 560
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	8 cut(s)	195, 213, 288, 293, 429, 466, 494, 749
AluI	AGCT	8 cut(s)	195, 213, 288, 293, 429, 466, 494, 749
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	2 cut(s)	133, 224
AoxI	GGCC	2 cut(s)	262, 615
ApoI	RAATTY	2 cut(s)	560, 784
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	405, 478
AsuHPI	GGTGA	3 cut(s)	314, 328, 509
BanII	GRGCYC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	215
BbvCI	CCTCAGC	1 cut(s)	467
BccI	CCATC	3 cut(s)	124, 437, 542
BciT130I	CCWGG	1 cut(s)	266
BciVI	GTATCC	1 cut(s)	656
BcoDI	GTCTC	2 cut(s)	133, 224
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	190
BfoI	RGCGCY	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	1 cut(s)	363
BlpI	GCTNAGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	717
Bpu10I	CCTNAGC	1 cut(s)	467
Bpu1102I	GCTNAGC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	632
BsaHI	GRCGYC	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	659
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 455, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 271, 691
Bse3DI	GCAATG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	266
BseGI	GGATG	3 cut(s)	595, 739, 781
BseLI	CCNNNNNNNGG	3 cut(s)	260, 271, 691
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	3 cut(s)	21, 126, 458
BseRI	GAGGAG	2 cut(s)	476, 581
BsgI	GTGCAG	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	264, 617
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	4 cut(s)	660, 685, 717, 731
BslI	CCNNNNNNNGG	3 cut(s)	260, 271, 691
BsmAI	GTCTC	2 cut(s)	133, 224
BsmI	GAATGC	2 cut(s)	42, 720
BsnI	GGCC	2 cut(s)	264, 617
Bso31I	GGTCTC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	222
Bsp1720I	GCTNAGC	1 cut(s)	289
BspACI	CCGC	4 cut(s)	186, 325, 363, 673
BspANI	GGCC	2 cut(s)	264, 617
BspCNI	CTCAG	3 cut(s)	20, 127, 459
BspFNI	CGCG	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	398
BssMI	GATC	1 cut(s)	222
BssNI	GRCGYC	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	314, 411
BstACI	GRCGYC	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	5 cut(s)	7, 135, 289, 467, 584
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	3 cut(s)	595, 739, 781
BstFNI	CGCG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	405, 478
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	2 cut(s)	133, 224
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	190
BstUI	CGCG	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	2 cut(s)	264, 617
BtsCI	GGATG	3 cut(s)	595, 739, 781
BtsIMutI	CAGTG	2 cut(s)	254, 310
Cac8I	GCNNGC	1 cut(s)	215
CfoI	GCGC	2 cut(s)	405, 478
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	753, 788
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	5 cut(s)	7, 135, 289, 467, 584
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
DraI	TTTAAA	1 cut(s)	783
DraIII	CACNNNGTG	1 cut(s)	587
EciI	GGCGGA	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	213
Eco57I	CTGAAG	2 cut(s)	239, 268
EcoICRI	GAGCTC	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	215
FaiI	YATR	3 cut(s)	176, 603, 645
FauI	CCCGC	1 cut(s)	666
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	3 cut(s)	582, 746, 788
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	2 cut(s)	404, 477
GluI	GCNGC	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	2 cut(s)	264, 617
HapII	CCGG	4 cut(s)	660, 685, 717, 731
HhaI	GCGC	2 cut(s)	405, 478
Hin1I	GRCGYC	1 cut(s)	348
Hin6I	GCGC	2 cut(s)	403, 476
HinP1I	GCGC	2 cut(s)	403, 476
HincII	GTYRAC	1 cut(s)	317
HindII	GTYRAC	1 cut(s)	317
HinfI	GANTC	3 cut(s)	232, 357, 713
HpaII	CCGG	4 cut(s)	660, 685, 717, 731
HphI	GGTGA	3 cut(s)	314, 328, 509
Hpy166II	GTNNAC	2 cut(s)	317, 577
Hpy188I	TCNGA	2 cut(s)	726, 809
Hpy188III	TCNNGA	4 cut(s)	437, 512, 611, 743
Hpy8I	GTNNAC	2 cut(s)	317, 577
Hpy99I	CGWCG	5 cut(s)	205, 347, 350, 353, 443
HpyAV	CCTTC	3 cut(s)	46, 173, 343
HpyCH4III	ACNGT	2 cut(s)	314, 411
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	4 cut(s)	42, 121, 151, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	5 cut(s)	7, 135, 289, 467, 584
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	348
HspAI	GCGC	2 cut(s)	403, 476
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	434, 463
LweI	GCATC	1 cut(s)	717
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	3 cut(s)	232, 274, 689
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	3 cut(s)	560, 768, 784
MlyI	GAGTC	2 cut(s)	226, 351
MmeI	TCCRAC	1 cut(s)	690
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	3 cut(s)	414, 422, 782
MslI	CAYNNNNRTG	2 cut(s)	600, 725
MspI	CCGG	4 cut(s)	660, 685, 717, 731
MspR9I	CCNGG	1 cut(s)	266
Mva1269I	GAATGC	2 cut(s)	42, 720
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeII	GATC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	2 cut(s)	206, 348
PctI	GAATGC	2 cut(s)	42, 720
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	713
PflFI	GACNNNGTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	2 cut(s)	226, 351
PpsI	GAGTC	2 cut(s)	226, 351
Psp124BI	GAGCTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PsyI	GACNNNGTC	1 cut(s)	347
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	600, 725
SacI	GAGCTC	1 cut(s)	215
SaqAI	TTAA	3 cut(s)	414, 422, 782
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	1 cut(s)	222
SchI	GAGTC	2 cut(s)	226, 351
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	717
SfcI	CTRYAG	1 cut(s)	190
SmiMI	CAYNNNNRTG	2 cut(s)	600, 725
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	3 cut(s)	560, 768, 784
SsiI	CCGC	4 cut(s)	186, 325, 363, 673
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	491
SstI	GAGCTC	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	314, 411
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	5 cut(s)	209, 270, 303, 355, 438
TasI	AATT	3 cut(s)	560, 768, 784
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	3 cut(s)	414, 422, 782
Tru9I	TTAA	3 cut(s)	414, 422, 782
TscAI	CASTG	2 cut(s)	261, 317
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	4 cut(s)	268, 402, 584, 750
TspGWI	ACGGA	2 cut(s)	146, 588
TspRI	CASTG	2 cut(s)	261, 317
Tth111I	GACNNNGTC	1 cut(s)	347
Van91I	CCANNNNNTGG	1 cut(s)	260
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	2 cut(s)	560, 784
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	491
ZraI	GACGTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.