Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Forward (+)

57805076 .. 57807472

Gene Structure 2397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G035080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGACGACGACGAACACCGAGAGGCAGAGAGCTCTTCTTCTGTTGCGCAGGGACATGGACGCCAGGCTCAGCTCTCTGGATTCGAGCACGAGCTCGCTCCAAATCGGCGAGAAGCTGTGTGCGTTGTGCATACCAGTGGTTGGTCTGATCGAGGCTTTCATCTTCAGCTTAGCCGGCTGCTTCGAACAACACCGTCCACGCCGTCACCACCGAGCCGCTTTCACCCACGACGACGTCGTTCGCCTCGCTGCCACCTCCCCATTTAGTGTAAATGACGTGGAAGCATTGCGTGAATTGTTCAACAAGTTGAGCAGTTCGATTCTAGATGATGGCTTAATTCACAAGGAGGAGCTTCAGTTGGCTCTGTTCAAAACTCAAGCAGGCGAAAATATTTTTCTTGATAGGGTATTTGATGTTTTTGACGAAAAGAAAAATGGAGTCATTGAATTTGAGGAGTTTATCCATGCATTAAGTGTATTTCATCCCTGCACTCCTCTTGAACAGAAGATTGACTTTGCATTCAGGTTGTATGATTTGAGACAGACTGGATATATTGAGCGGGAAGAAGTTAGGCAAATGGTAGTCGCCACTTTGTTGGAATCCGGCATACCCGTGCCAGATGAAACTCTTGAAACAATTGTGGATAAGACATTTGAAGACGCTGATGCCGATAAGGATGGCAAAATTAGCAATGATGAATGGAAGGCTTTTGTATTTCGCCAGCCTACACTCGTAAAGAACATGACACTTCCATATTTAAAGGACATCACCACAGTCTTCCCAAGTTTTATTTTCAACACTGAAGTCGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

271

Amino Acids

30.98

Weight (kDa)

4.89

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	167 - 233	9.3e-11	EF-hand domain pair
EF-hand_5	PF13202	214 - 238	2.8e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
Acc16I	TGCGCA	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccBSI	CCGCTC	1 cut(s)	559
AciI	CCGC	2 cut(s)	216, 559
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	2 cut(s)	148, 338
AcyI	GRCGYC	2 cut(s)	60, 234
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	7 cut(s)	301, 370, 446, 500, 632, 656, 796
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	6 cut(s)	32, 72, 93, 115, 168, 352
AluI	AGCT	6 cut(s)	32, 72, 93, 115, 168, 352
Alw21I	GWGCWC	3 cut(s)	34, 89, 95
Alw26I	GTCTC	1 cut(s)	532
ApeKI	GCWGC	2 cut(s)	177, 248
ApoI	RAATTY	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	48
AsuHPI	GGTGA	3 cut(s)	197, 214, 760
AsuII	TTCGAA	1 cut(s)	183
BanII	GRGCYC	2 cut(s)	34, 95
BauI	CACGAG	1 cut(s)	88
BbsI	GAAGAC	2 cut(s)	663, 769
Bbv12I	GWGCWC	3 cut(s)	34, 89, 95
BbvI	GCAGC	2 cut(s)	164, 235
BccI	CCATC	2 cut(s)	323, 671
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	1 cut(s)	323
BisI	GCNGC	3 cut(s)	178, 216, 249
BlpI	GCTNAGC	2 cut(s)	68, 169
BlsI	GCNGC	3 cut(s)	179, 217, 250
Bme1390I	CCNGG	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	655
BpiI	GAAGAC	2 cut(s)	663, 769
Bpu1102I	GCTNAGC	2 cut(s)	68, 169
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	360
BsaHI	GRCGYC	2 cut(s)	60, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	134, 550
Bse3DI	GCAATG	2 cut(s)	284, 697
BseBI	CCWGG	1 cut(s)	64
BseGI	GGATG	2 cut(s)	481, 682
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	2 cut(s)	284, 697
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	2 cut(s)	134, 550
BseRI	GAGGAG	3 cut(s)	362, 467, 483
BseXI	GCAGC	2 cut(s)	164, 235
BsgI	GTGCAG	1 cut(s)	472
BsiHKAI	GWGCWC	3 cut(s)	34, 89, 95
BsiSI	CCGG	2 cut(s)	174, 603
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	518
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	3 cut(s)	34, 89, 95
Bsp143I	GATC	1 cut(s)	147
Bsp1720I	GCTNAGC	2 cut(s)	68, 169
BspACI	CCGC	2 cut(s)	216, 559
BspCNI	CTCAG	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	183
BsrBI	CCGCTC	1 cut(s)	559
BsrDI	GCAATG	2 cut(s)	284, 697
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	134, 550
BssAI	RCCGGY	1 cut(s)	173
BssMI	GATC	1 cut(s)	147
BssNI	GRCGYC	2 cut(s)	60, 234
BssSI	CACGAG	1 cut(s)	88
Bst2BI	CACGAG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	194, 775
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	2 cut(s)	60, 234
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	4 cut(s)	95, 175, 382, 722
BstDEI	CTNAG	2 cut(s)	68, 169
BstF5I	GGATG	2 cut(s)	481, 682
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 687
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	164, 235
BstV2I	GAAGAC	2 cut(s)	663, 769
BstXI	CCANNNNNNTGG	1 cut(s)	595
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	481, 682
BtsIMutI	CAGTG	2 cut(s)	141, 798
Cac8I	GCNNGC	4 cut(s)	95, 175, 382, 722
CfoI	GCGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	173
CseI	GACGC	2 cut(s)	68, 668
CviAII	CATG	3 cut(s)	55, 464, 742
DdeI	CTNAG	2 cut(s)	68, 169
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DraI	TTTAAA	1 cut(s)	759
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	2 cut(s)	32, 93
Eco24I	GRGCYC	2 cut(s)	34, 95
Eco53kI	GAGCTC	2 cut(s)	32, 93
Eco57I	CTGAAG	2 cut(s)	148, 338
EcoICRI	GAGCTC	2 cut(s)	32, 93
EcoRII	CCWGG	1 cut(s)	62
EcoT22I	ATGCAT	1 cut(s)	469
EcoT38I	GRGCYC	2 cut(s)	34, 95
FaeI	CATG	3 cut(s)	58, 467, 745
FaiI	YATR	8 cut(s)	56, 131, 465, 531, 552, 608, 743, 754
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	3 cut(s)	54, 463, 741
FauI	CCCGC	1 cut(s)	552
Fnu4HI	GCNGC	3 cut(s)	178, 216, 249
FokI	GGATG	2 cut(s)	468, 689
FriOI	GRGCYC	2 cut(s)	34, 95
Fsp4HI	GCNGC	3 cut(s)	178, 216, 249
FspBI	CTAG	1 cut(s)	323
FspI	TGCGCA	1 cut(s)	47
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	3 cut(s)	178, 216, 249
HapII	CCGG	2 cut(s)	174, 603
HgaI	GACGC	2 cut(s)	68, 668
HhaI	GCGC	1 cut(s)	48
Hin1I	GRCGYC	2 cut(s)	60, 234
Hin1II	CATG	3 cut(s)	58, 467, 745
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	4 cut(s)	80, 319, 438, 599
HpaII	CCGG	2 cut(s)	174, 603
HphI	GGTGA	3 cut(s)	197, 214, 760
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	5 cut(s)	77, 323, 398, 497, 629
Hpy8I	GTNNAC	1 cut(s)	197
Hpy99I	CGWCG	5 cut(s)	10, 13, 233, 236, 239
HpyAV	CCTTC	1 cut(s)	697
HpyCH4III	ACNGT	2 cut(s)	194, 775
HpyCH4IV	ACGT	2 cut(s)	234, 276
HpyCH4V	TGCA	4 cut(s)	129, 467, 489, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 687
HpyF3I	CTNAG	2 cut(s)	68, 169
HpySE526I	ACGT	2 cut(s)	234, 276
Hsp92I	GRCGYC	2 cut(s)	60, 234
Hsp92II	CATG	3 cut(s)	58, 467, 745
HspAI	GCGC	1 cut(s)	46
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	147
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	102, 349
Lsp1109I	GCAGC	2 cut(s)	164, 235
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	2 cut(s)	234, 276
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	149
MbiI	CCGCTC	1 cut(s)	559
MboI	GATC	1 cut(s)	147
MboII	GAAGA	7 cut(s)	26, 29, 154, 517, 575, 668, 769
MfeI	CAATTG	1 cut(s)	636
MhlI	GDGCHC	3 cut(s)	34, 89, 95
MluCI	AATT	5 cut(s)	293, 336, 446, 636, 684
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	8 cut(s)	15, 145, 254, 265, 340, 445, 504, 802
Mph1103I	ATGCAT	1 cut(s)	469
MroNI	GCCGGC	1 cut(s)	173
MseI	TTAA	3 cut(s)	335, 470, 758
MslI	CAYNNNNRTG	2 cut(s)	134, 611
MspI	CCGG	2 cut(s)	174, 603
MspR9I	CCNGG	1 cut(s)	64
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	174, 687
NaeI	GCCGGC	1 cut(s)	175
NdeII	GATC	1 cut(s)	147
NgoMIV	GCCGGC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	58, 467, 745
NmuCI	GTSAC	1 cut(s)	203
NsbI	TGCGCA	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 666
PctI	GAATGC	1 cut(s)	518
PdiI	GCCGGC	1 cut(s)	175
PfeI	GAWTC	3 cut(s)	80, 319, 599
PflFI	GACNNNGTC	1 cut(s)	233
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	179, 217, 250
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Psp124BI	GAGCTC	2 cut(s)	34, 95
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PsyI	GACNNNGTC	1 cut(s)	233
RseI	CAYNNNNRTG	2 cut(s)	134, 611
SacI	GAGCTC	2 cut(s)	34, 95
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	335, 470, 758
SatI	GCNGC	3 cut(s)	178, 216, 249
Sau3AI	GATC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	3 cut(s)	34, 89, 95
SfaNI	GCATC	1 cut(s)	655
SfuI	TTCGAA	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	134, 611
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	5 cut(s)	293, 336, 446, 636, 684
SsiI	CCGC	2 cut(s)	216, 559
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	2 cut(s)	34, 95
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	194, 775
TaiI	ACGT	2 cut(s)	237, 279
TaqI	TCGA	5 cut(s)	83, 150, 183, 317, 807
TasI	AATT	5 cut(s)	293, 336, 446, 636, 684
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	3 cut(s)	80, 319, 599
Tru1I	TTAA	3 cut(s)	335, 470, 758
Tru9I	TTAA	3 cut(s)	335, 470, 758
TscAI	CASTG	2 cut(s)	141, 805
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	2 cut(s)	177, 248
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	4 cut(s)	148, 470, 636, 711
TspRI	CASTG	2 cut(s)	141, 805
Tth111I	GACNNNGTC	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	446
XbaI	TCTAGA	1 cut(s)	322
XspI	CTAG	1 cut(s)	323
ZraI	GACGTC	1 cut(s)	235
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.