Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002018

Physical Location & Seq

Genomic Coordinates Reverse (-)

17493583 .. 17495782

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1194600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAAATATTTAGTGTGAATGAGGTGGAAGCATTGCGCGAACTGTTTAACAAGTTGAGTAGTTCCATTCTCGACGATGGATTACTTCACAAGGAGGAGCTGAGGTTGGCGCTTTTCAAAACTCTAGCTGGTGAAAATCTTTTTCTTGATAGGGTGTTTGATGTTTTTGACGAAAAGAAAGATGGAGTGATTGAATTTGAGGAGTTTGTCCACGCACTAAGTGTGTTTCATCCGTATGCTTCTCTTGAGGCCAAGATTGATTTCGCGTTTAGATTGTATGATTTGAGGCAAGCCGGATACATCGGGCGGGAAGAAGTCAGGCAAATGGTAGTTGCTACTTTGTTGGAATCTGGCATTCAGATGCCGGATGAAACTCTTGAAGCTATCGTCGATAAGACGTTTGAGGATGCCGACGTTGACAAGGATGAAAAAATTGGCAAAGACGAATGGAAAGCTTATGCTATTCGGTACCCAACACTCCTAAAGAACATGACCCTTCCATATTTAAAGGACATCACGACGGTTTTTCCGAGTTTTATTTTCAACACTGGAGTCGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

188

Amino Acids

21.57

Weight (kDa)

4.62

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	49 - 74	3.4e-06	EF hand domain
EF-hand_7	PF13499	84 - 151	4.6e-09	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000 AT4G33000
fragaria_vesca	FvH4_2g32000 FvH4_2g32000 FvH4_2g32000 FvH4_6g33150
malus_domestica	MD08G1043100.v1.1 MD09G1194500.v1.1 MD09G1194600.v1.1
prunus_persica	Prupe.1G412900_v2.0.a1 Prupe.1G412900_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1 Prupe.3G051100_v2.0.a1
pyrus_communis	pycom08g03460 pycom09g11150
rosa_chinensis	RchiOBHm_Chr2g0142841 RchiOBHm_Chr2g0142851 RchiOBHm_Chr6g0310771
rosa_laevigata	RLG00000019991 RLG00000019993
rosa_multiflora	Rmu_sc0004688.1_g000005 Rmu_sc0012306.1_g000001 Rmu_sc0013116.1_g000001 Rmu_sc0017450.1_g000001 Rmu_ssc0000395.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102260 Rroxscaffold_2G00103310
rosa_rugosa	Rorug02G0376000.1 Rorug06G0383100
rosa_samantha	Rh2AG428900 Rh2BG438400 Rh2CG414400 Rh6AG496900 Rh6CG512400 Rh6DG499000
rosa_wichuraiana	Rw2G035070 Rw2G035080 Rw6G043270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	468
AccII	CGCG	2 cut(s)	39, 266
AciI	CCGC	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	470
AgsI	TTSAA	4 cut(s)	118, 194, 380, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	4 cut(s)	100, 128, 383, 455
AluI	AGCT	4 cut(s)	100, 128, 383, 455
AoxI	GGCC	1 cut(s)	249
ApoI	RAATTY	1 cut(s)	194
Asp718I	GGTACC	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	39, 112
AsuHPI	GGTGA	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	101
BccI	CCATC	2 cut(s)	71, 176
BciVI	GTATCC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	113
BfuI	GTATCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	470
BmsI	GCATC	2 cut(s)	351, 397
Bpu10I	CCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	266
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	32
BseGI	GGATG	4 cut(s)	229, 373, 412, 430
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	2 cut(s)	110, 215
Bsh1236I	CGCG	2 cut(s)	39, 266
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	468
BsiSI	CCGG	2 cut(s)	294, 365
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	1 cut(s)	251
BspACI	CCGC	1 cut(s)	307
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	39, 266
BspLI	GGNNCC	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	553
Bst4CI	ACNGT	2 cut(s)	45, 523
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	101, 218
BstF5I	GGATG	4 cut(s)	229, 373, 412, 430
BstFNI	CGCG	2 cut(s)	39, 266
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	39, 112
BstUI	CGCG	2 cut(s)	39, 266
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	4 cut(s)	229, 373, 412, 430
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	2 cut(s)	39, 112
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	1 cut(s)	490
CviJI	RGCY	6 cut(s)	100, 128, 251, 293, 383, 455
CviKI_1	RGCY	6 cut(s)	100, 128, 251, 293, 383, 455
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	2 cut(s)	101, 218
DraI	TTTAAA	1 cut(s)	507
DraIII	CACNNNGTG	1 cut(s)	221
FaeI	CATG	1 cut(s)	493
FaiI	YATR	5 cut(s)	237, 279, 459, 491, 502
FatI	CATG	1 cut(s)	489
FauI	CCCGC	1 cut(s)	300
FokI	GGATG	4 cut(s)	216, 380, 419, 437
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	2 cut(s)	38, 111
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	2 cut(s)	294, 365
HhaI	GCGC	2 cut(s)	39, 112
Hin1II	CATG	1 cut(s)	493
Hin6I	GCGC	2 cut(s)	37, 110
HinP1I	GCGC	2 cut(s)	37, 110
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	2 cut(s)	347, 552
HpaII	CCGG	2 cut(s)	294, 365
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	2 cut(s)	211, 418
Hpy188I	TCNGA	2 cut(s)	360, 531
Hpy188III	TCNNGA	5 cut(s)	71, 146, 245, 377, 517
Hpy8I	GTNNAC	2 cut(s)	211, 418
Hpy99I	CGWCG	4 cut(s)	77, 392, 416, 523
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	2 cut(s)	45, 523
HpyCH4IV	ACGT	2 cut(s)	398, 414
HpyF3I	CTNAG	2 cut(s)	101, 218
HpySE526I	ACGT	2 cut(s)	398, 414
Hsp92II	CATG	1 cut(s)	493
HspAI	GCGC	2 cut(s)	37, 110
KpnI	GGTACC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	6 cut(s)	114, 304, 307, 336, 378, 534
LweI	GCATC	2 cut(s)	351, 397
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	2 cut(s)	398, 414
MboII	GAAGA	1 cut(s)	323
MluCI	AATT	2 cut(s)	194, 432
MlyI	GAGTC	1 cut(s)	561
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	7 cut(s)	16, 88, 96, 193, 241, 279, 397
MseI	TTAA	2 cut(s)	48, 506
MslI	CAYNNNNRTG	2 cut(s)	234, 359
MspI	CCGG	2 cut(s)	294, 365
Mva1269I	GAATGC	1 cut(s)	354
MvnI	CGCG	2 cut(s)	39, 266
NlaIII	CATG	1 cut(s)	493
NlaIV	GGNNCC	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	527
PctI	GAATGC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	347
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	470
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	2 cut(s)	234, 359
SaqAI	TTAA	2 cut(s)	48, 506
SchI	GAGTC	1 cut(s)	561
SetI	ASST	8 cut(s)	27, 102, 107, 130, 385, 401, 417, 457
SfaNI	GCATC	2 cut(s)	351, 397
SmiMI	CAYNNNNRTG	2 cut(s)	234, 359
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	194, 432
SsiI	CCGC	1 cut(s)	307
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	45, 523
TaiI	ACGT	2 cut(s)	401, 417
TaqI	TCGA	3 cut(s)	72, 390, 555
TasI	AATT	2 cut(s)	194, 432
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	2 cut(s)	48, 506
Tru9I	TTAA	2 cut(s)	48, 506
TscAI	CASTG	1 cut(s)	553
TspDTI	ATGAA	4 cut(s)	17, 218, 384, 441
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	553
XapI	RAATTY	1 cut(s)	194
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.