Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Reverse (-)

16875521 .. 16877451

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATGGAATGGGATAATCAGCTACAACCCAATAACCATCACTCTTCTAATCTTCAAGGGATCGACGTTAATGGCGGCTCCGGCGCCGGAGGAGGAATGTACGTGAAGGTGATGACCGATGAGCAGTATGAAACTCTCAGGAAACAGATTGCTATTTACGGCACCATTTGTGAGCGTCTTGTTGAGATGCATAAAACTCTCACTGCTCAACAAGATCTTGCAGGAGGGAGAATGGGAGGACTATATGCAGACCCAATGATGTCATCTTTAGGTCATAAGATGACAGCTAGACAGAGGTGGACTCCTACGCCAGTCCAGCTTCAGATTCTGGAACGTATATTCGATCAAGGCACGGGAACACCGAGCAAGCAGAAGATCAAAGACATAACAGAAGAGCTGAGCCAACACGGCCAGATTGCTGAACAAAATGTCTATAACTGGTTCCAGAACCGACGTGCTCGATCCAAGAGGAAGCAGCATGGTGGAGGTTCTTCTGGAAATAATAATGGTGAGTCTGAGGTAGAGACTGAAGTTGAAGCATTGAATGAGAAGAGAGTAGTGAGGCCAGAGAGTCTTCTTGGTCTTCCAGATGGAAATAGCAACAATAATGGGTTAGGGACAACAACAGCAACAACTACTGCTCCTAGGCCTGAAGATCTTTGCTTTCAGAGCCCTGAGATTAGCTCAGACCTTCACTTGCTAGATGTTCTATCAAACCCAAGGGATGAGCATCTTGTTGGAAAGATGGGACTGGCGGAAAGTTACAACCTTTATGATCATGTTGAAGATTATGGCATGTCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010072 GO:0010087 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043565 GO:0044212 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

268

Amino Acids

29.67

Weight (kDa)

5.38

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	97 - 157	1.8e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	83, 161
AciI	CCGC	2 cut(s)	75, 755
AclWI	GGATC	2 cut(s)	68, 456
AcoI	YGGCCR	1 cut(s)	409
AcuI	CTGAAG	3 cut(s)	305, 549, 672
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	56, 536, 544, 785
AjiI	CACGTC	1 cut(s)	455
AluBI	AGCT	5 cut(s)	22, 287, 319, 397, 684
AluI	AGCT	5 cut(s)	22, 287, 319, 397, 684
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	1 cut(s)	518
AlwI	GGATC	2 cut(s)	68, 456
AlwNI	CAGNNNCTG	1 cut(s)	328
AoxI	GGCC	3 cut(s)	409, 563, 647
ApeKI	GCWGC	1 cut(s)	475
AspA2I	CCTAGG	1 cut(s)	644
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	121, 521
AvrII	CCTAGG	1 cut(s)	644
BanI	GGYRCC	2 cut(s)	83, 161
BanII	GRGCYC	1 cut(s)	674
BbsI	GAAGAC	2 cut(s)	566, 575
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	3 cut(s)	45, 584, 739
BceAI	ACGGC	2 cut(s)	175, 424
BclI	TGATCA	1 cut(s)	775
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	3 cut(s)	288, 645, 701
BfoI	RGCGCY	1 cut(s)	87
BglI	GCCNNNNNGGC	1 cut(s)	408
BglII	AGATCT	2 cut(s)	214, 655
BisI	GCNGC	2 cut(s)	76, 476
BlnI	CCTAGG	1 cut(s)	644
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	2 cut(s)	77, 477
BmgBI	CACGTC	1 cut(s)	455
BmiI	GGNNCC	4 cut(s)	79, 85, 163, 443
BmsI	GCATC	2 cut(s)	177, 739
BpiI	GAAGAC	2 cut(s)	566, 575
BplI	GAGNNNNNCTC	4 cut(s)	286, 318, 668, 700
Bpu1102I	GCTNAGC	1 cut(s)	398
BsaAI	YACGTR	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	644, 719
BsaXI	ACNNNNNCTCC	2 cut(s)	625, 655
Bse1I	ACTGG	3 cut(s)	311, 443, 756
Bse8I	GATNNNNATC	1 cut(s)	729
BseDI	CCNNGG	2 cut(s)	644, 719
BseGI	GGATG	1 cut(s)	730
BseJI	GATNNNNATC	1 cut(s)	729
BseMII	CTCAG	5 cut(s)	151, 389, 507, 666, 699
BseNI	ACTGG	3 cut(s)	311, 443, 756
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	487
BshFI	GGCC	3 cut(s)	411, 565, 649
BshNI	GGYRCC	2 cut(s)	83, 161
BsiHKAI	GWGCWC	1 cut(s)	460
BsiSI	CCGG	2 cut(s)	81, 87
BslFI	GGGAC	2 cut(s)	631, 762
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	2 cut(s)	631, 762
BsnI	GGCC	3 cut(s)	411, 565, 649
Bsp1286I	GDGCHC	2 cut(s)	460, 674
Bsp143I	GATC	7 cut(s)	60, 214, 343, 375, 461, 655, 775
Bsp1720I	GCTNAGC	1 cut(s)	398
BspACI	CCGC	2 cut(s)	75, 755
BspANI	GGCC	3 cut(s)	411, 565, 649
BspCNI	CTCAG	5 cut(s)	150, 390, 508, 667, 698
BspLI	GGNNCC	4 cut(s)	79, 85, 163, 443
BspPI	GGATC	2 cut(s)	68, 456
BspQI	GCTCTTC	1 cut(s)	387
BspT107I	GGYRCC	2 cut(s)	83, 161
BsrI	ACTGG	3 cut(s)	311, 443, 756
BssECI	CCNNGG	2 cut(s)	644, 719
BssMI	GATC	7 cut(s)	60, 214, 343, 375, 461, 655, 775
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	644, 719
Bst6I	CTCTTC	3 cut(s)	49, 387, 545
BstACI	GRCGYC	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	5 cut(s)	137, 398, 516, 675, 685
BstF5I	GGATG	1 cut(s)	730
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	7 cut(s)	63, 217, 346, 378, 464, 658, 778
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	7 cut(s)	60, 214, 343, 375, 461, 655, 775
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 316, 408, 669, 801
BstNSI	RCATGY	1 cut(s)	799
BstV1I	GCAGC	1 cut(s)	487
BstV2I	GAAGAC	2 cut(s)	566, 575
BstX2I	RGATCY	2 cut(s)	214, 655
BstYI	RGATCY	2 cut(s)	214, 655
BsuRI	GGCC	3 cut(s)	411, 565, 649
BtrI	CACGTC	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	730
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	368
CaiI	CAGNNNCTG	1 cut(s)	328
CfoI	GCGC	1 cut(s)	86
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	3 cut(s)	479, 779, 796
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	5 cut(s)	137, 398, 516, 675, 685
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	7 cut(s)	62, 216, 345, 377, 463, 657, 777
DpnII	GATC	7 cut(s)	60, 214, 343, 375, 461, 655, 775
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	3 cut(s)	49, 387, 545
EarI	CTCTTC	3 cut(s)	49, 387, 545
EciI	GGCGGA	1 cut(s)	770
Eco130I	CCWWGG	2 cut(s)	644, 719
Eco147I	AGGCCT	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	674
Eco57I	CTGAAG	3 cut(s)	305, 549, 672
EcoT14I	CCWWGG	2 cut(s)	644, 719
EcoT22I	ATGCAT	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	674
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	2 cut(s)	644, 719
FaeI	CATG	3 cut(s)	482, 782, 799
FaqI	GGGAC	2 cut(s)	631, 762
FatI	CATG	3 cut(s)	478, 778, 795
FbaI	TGATCA	1 cut(s)	775
Fnu4HI	GCNGC	2 cut(s)	76, 476
FokI	GGATG	1 cut(s)	737
FriOI	GRGCYC	1 cut(s)	674
Fsp4HI	GCNGC	2 cut(s)	76, 476
FspBI	CTAG	3 cut(s)	288, 645, 701
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	76, 476
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	411, 565, 649
HapII	CCGG	2 cut(s)	81, 87
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	482, 782, 799
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	4 cut(s)	301, 325, 512, 571
HpaII	CCGG	2 cut(s)	81, 87
HphI	GGTGA	2 cut(s)	121, 521
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	4 cut(s)	324, 517, 669, 688
Hpy188III	TCNNGA	5 cut(s)	139, 329, 445, 495, 587
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	2 cut(s)	68, 456
HpyAV	CCTTC	2 cut(s)	100, 701
HpyCH4IV	ACGT	4 cut(s)	66, 102, 334, 454
HpyCH4V	TGCA	3 cut(s)	190, 221, 248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 316, 408, 669, 801
HpyF3I	CTNAG	5 cut(s)	137, 398, 516, 675, 685
HpySE526I	ACGT	4 cut(s)	66, 102, 334, 454
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	482, 782, 799
HspAI	GCGC	1 cut(s)	84
KasI	GGCGCC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	7 cut(s)	60, 214, 343, 375, 461, 655, 775
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	2 cut(s)	83, 646
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	2 cut(s)	177, 739
MaeI	CTAG	3 cut(s)	288, 645, 701
MaeII	ACGT	4 cut(s)	66, 102, 334, 454
MaeIII	GTNAC	1 cut(s)	761
MalI	GATC	7 cut(s)	62, 216, 345, 377, 463, 657, 777
MboI	GATC	7 cut(s)	60, 214, 343, 375, 461, 655, 775
MflI	RGATCY	2 cut(s)	214, 655
MhlI	GDGCHC	2 cut(s)	460, 674
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	3 cut(s)	295, 521, 580
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	9 cut(s)	83, 86, 218, 230, 288, 462, 479, 511, 555
Mph1103I	ATGCAT	1 cut(s)	192
MseI	TTAA	1 cut(s)	69
MspI	CCGG	2 cut(s)	81, 87
MwoI	GCNNNNNNNGC	5 cut(s)	81, 316, 408, 669, 801
NarI	GGCGCC	1 cut(s)	84
NdeII	GATC	7 cut(s)	60, 214, 343, 375, 461, 655, 775
NlaIII	CATG	3 cut(s)	482, 782, 799
NlaIV	GGNNCC	4 cut(s)	79, 85, 163, 443
NsiI	ATGCAT	1 cut(s)	192
NspI	RCATGY	1 cut(s)	799
PceI	AGGCCT	1 cut(s)	649
PciSI	GCTCTTC	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	77, 477
PleI	GAGTC	3 cut(s)	295, 520, 579
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	3 cut(s)	295, 520, 579
Ppu21I	YACGTR	1 cut(s)	103
PspN4I	GGNNCC	4 cut(s)	79, 85, 163, 443
PstNI	CAGNNNCTG	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	214, 655
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	76, 476
Sau3AI	GATC	7 cut(s)	60, 214, 343, 375, 461, 655, 775
SchI	GAGTC	3 cut(s)	295, 521, 580
SduI	GDGCHC	2 cut(s)	460, 674
SfaNI	GCATC	2 cut(s)	177, 739
SfoI	GGCGCC	1 cut(s)	85
SseBI	AGGCCT	1 cut(s)	649
SsiI	CCGC	2 cut(s)	75, 755
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	3 cut(s)	288, 645, 701
StuI	AGGCCT	1 cut(s)	649
StyI	CCWWGG	2 cut(s)	644, 719
TaiI	ACGT	4 cut(s)	69, 105, 337, 457
TaqI	TCGA	3 cut(s)	63, 342, 460
TaqII	GACCGA	1 cut(s)	131
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	475
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	208
XceI	RCATGY	1 cut(s)	799
XmaJI	CCTAGG	1 cut(s)	644
XspI	CTAG	3 cut(s)	288, 645, 701
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.