Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Reverse (-)

5602003 .. 5605433

Gene Structure 3431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10280.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGAGTCAGGATGGGAAATCTATACTGTGATCCACTGATGACATCTTCTGGCCACAAAATAACTGCCAGACAGCGCTGGACTCCAACACCGGTGCAGCTACAGATTCTGGAGCAATTGTTTGATCAAGGGAATGGAACTCCAAGTAAGCAAAAGATCAAGGAGATAACCTCTGAACTGAGCCAGCATGGCCAAATATCTGAAACCAATGTTTATAATTGGTTTCAGAACAGGCGTGCTCGATCAAAGAGGAAGCAACAGAATGCAACATCCAACAATGCTGAATCAGAAGTGGAGACTGAAGTTGACTCTCCCAAGGACAAGAAAAAAGGACCTCAGGATCAAATTTTACAGTCCCAACAGAACATATCAGCCCAAAGGGCTGAAGATTTGTGCTTTCAGAACCCTGAGATGAGTTCTGACCTGCATTTCTTGGATCCACAGGGCATTAAAGAAGACAAAATGTTTGCATCGAGCAGCGATTTAAGGCTGTCCAGAGGTTTAGGCCATATGTCATTCTATGATGAAGTGCTATCAAGCTCAAGTAAGTTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

186

Amino Acids

20.99

Weight (kDa)

6.91

Isoelectric Point (pI)

67.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	92 - 152	1.5e-16	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	432
AclWI	GGATC	4 cut(s)	26, 348, 431, 444
AcoI	YGGCCR	2 cut(s)	52, 190
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	321, 405
AfeI	AGCGCT	1 cut(s)	77
AgeI	ACCGGT	1 cut(s)	91
AluBI	AGCT	2 cut(s)	100, 540
AluI	AGCT	2 cut(s)	100, 540
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	4 cut(s)	26, 348, 431, 444
AlwNI	CAGNNNCTG	1 cut(s)	109
Aor51HI	AGCGCT	1 cut(s)	77
AoxI	GGCC	3 cut(s)	52, 190, 505
ApeKI	GCWGC	2 cut(s)	97, 477
ApoI	RAATTY	1 cut(s)	345
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AsiGI	ACCGGT	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	332
AxyI	CCTNAGG	1 cut(s)	336
BalI	TGGCCA	2 cut(s)	54, 192
BamHI	GGATCC	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	109, 489
BccI	CCATC	1 cut(s)	7
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	101
BfoI	RGCGCY	1 cut(s)	79
BfuAI	ACCTGC	1 cut(s)	432
BglI	GCCNNNNNGGC	2 cut(s)	189, 380
BisI	GCNGC	2 cut(s)	98, 478
BlsI	GCNGC	2 cut(s)	99, 479
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	438
BmsI	GCATC	1 cut(s)	479
BpiI	GAAGAC	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	526
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bse118I	RCCGGY	1 cut(s)	91
Bse21I	CCTNAGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	2 cut(s)	18, 269
BseMII	CTCAG	3 cut(s)	170, 350, 399
BseXI	GCAGC	2 cut(s)	109, 489
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	3 cut(s)	54, 192, 507
BshTI	ACCGGT	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	3 cut(s)	54, 192, 507
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
BspANI	GGCC	3 cut(s)	54, 192, 507
BspCNI	CTCAG	3 cut(s)	171, 349, 400
BspLI	GGNNCC	1 cut(s)	438
BspMI	ACCTGC	1 cut(s)	432
BspPI	GGATC	4 cut(s)	26, 348, 431, 444
BsrFI	RCCGGY	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	29, 354
BstC8I	GCNNGC	2 cut(s)	185, 237
BstDEI	CTNAG	3 cut(s)	179, 336, 408
BstF5I	GGATG	2 cut(s)	18, 269
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	6 cut(s)	34, 127, 159, 245, 343, 439
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 380
BstSFI	CTRYAG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	109, 489
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	54, 192, 507
BtsCI	GGATG	2 cut(s)	18, 269
BtsIMutI	CAGTG	1 cut(s)	35
BveI	ACCTGC	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	185, 237
CaiI	CAGNNNCTG	1 cut(s)	109
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	332
CspAI	ACCGGT	1 cut(s)	91
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	9 cut(s)	54, 100, 183, 192, 374, 383, 490, 507, 540
CviKI_1	RGCY	9 cut(s)	54, 100, 183, 192, 374, 383, 490, 507, 540
DdeI	CTNAG	3 cut(s)	179, 336, 408
DpnI	GATC	6 cut(s)	33, 126, 158, 244, 342, 438
DpnII	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
EaeI	YGGCCR	2 cut(s)	52, 190
Eco130I	CCWWGG	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	332
Eco47III	AGCGCT	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	321, 405
Eco81I	CCTNAGG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	191
FaiI	YATR	8 cut(s)	25, 189, 216, 368, 510, 512, 522, 556
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	1 cut(s)	187
FauNDI	CATATG	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	98, 478
FokI	GGATG	2 cut(s)	25, 256
Fsp4HI	GCNGC	2 cut(s)	98, 478
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	2 cut(s)	98, 478
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	3 cut(s)	54, 192, 507
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	191
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	5 cut(s)	6, 82, 106, 284, 308
HpaII	CCGG	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	6 cut(s)	175, 202, 228, 289, 402, 421
Hpy188III	TCNNGA	4 cut(s)	10, 110, 338, 495
Hpy8I	GTNNAC	1 cut(s)	307
HpyCH4III	ACNGT	2 cut(s)	29, 354
HpyCH4V	TGCA	4 cut(s)	97, 266, 427, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 380
HpyF3I	CTNAG	3 cut(s)	179, 336, 408
Hsp92II	CATG	1 cut(s)	191
HspAI	GCGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	2 cut(s)	109, 489
LweI	GCATC	1 cut(s)	479
MalI	GATC	6 cut(s)	33, 126, 158, 244, 342, 438
MboI	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
MboII	GAAGA	3 cut(s)	39, 398, 467
MfeI	CAATTG	1 cut(s)	116
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	241
MlsI	TGGCCA	2 cut(s)	54, 192
MluCI	AATT	3 cut(s)	116, 217, 345
MluNI	TGGCCA	2 cut(s)	54, 192
MlyI	GAGTC	3 cut(s)	15, 76, 302
MmeI	TCCRAC	2 cut(s)	110, 297
MnlI	CCTC	4 cut(s)	181, 243, 345, 491
Mox20I	TGGCCA	2 cut(s)	54, 192
MscI	TGGCCA	2 cut(s)	54, 192
MseI	TTAA	3 cut(s)	450, 485, 551
Msp20I	TGGCCA	2 cut(s)	54, 192
MspI	CCGG	1 cut(s)	92
MunI	CAATTG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	189, 380
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	106, 284
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	99, 479
PleI	GAGTC	3 cut(s)	14, 76, 302
PpsI	GAGTC	3 cut(s)	14, 76, 302
PpuMI	RGGWCCY	1 cut(s)	332
PsiI	TTATAA	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	332
PspPPI	RGGWCCY	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	436
SaqAI	TTAA	3 cut(s)	450, 485, 551
SatI	GCNGC	2 cut(s)	98, 478
Sau3AI	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	3 cut(s)	15, 76, 302
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	6 cut(s)	102, 173, 337, 426, 502, 542
SfaNI	GCATC	1 cut(s)	479
SfcI	CTRYAG	1 cut(s)	101
SgrAI	CRCCGGYG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
Sse9I	AATT	3 cut(s)	116, 217, 345
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	29, 354
TaqI	TCGA	2 cut(s)	241, 473
TasI	AATT	3 cut(s)	116, 217, 345
TfiI	GAWTC	2 cut(s)	106, 284
Tru1I	TTAA	3 cut(s)	450, 485, 551
Tru9I	TTAA	3 cut(s)	450, 485, 551
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	2 cut(s)	97, 477
TspDTI	ATGAA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.