Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Reverse (-)

6188364 .. 6190624

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGAACACTACACCCACCCAACAATTATTTGCTCTTTTTTCATTTTTTATATGATTTTTCAACATCCTCTGGCCCGTGTTTATATTTTCTCTCCATCTTTTTGTCGCCTTTCTTTCTCATTGTCTTTGTATTCTTCTTCTTTGACAAGAAGCACTGTCTCAGTTTTTCAACACAAGCACAGACCGAGGACTGTAGAGAGAGAAAGTTCAAGAGAGAGATGATGGAGTGGGAGAAGCAGCAACTGAAAGAGCAGCAAGAGATGGAGGGGAATGGGAATGGAGGAGTGATGTATGTGAAGGTGATGACTGATGAACAGTTGGAGACTCTGAGGAAACAGATTGCAGTTTATGCCACCATTTGTGAGCAGCTTGTTGAGATGCACAAGAACCTCACTGCCCAGCAAGATCTTGCAGGAGTCAGGATGGGGAATCTGTACTGCGATCAGTTGATGACATCCACTGGCCACAAAATTACTGCCAGGCAGCGGTGGACTCCAACAGCGCTGCAGCTCCAAATTCTTGAGCGTTTGTTCGAGCAAGGGAATGGAACTCCAAGTAAGCAGAAGATCAAGGAGATCACCTCTGAGCTGAGCCAGCATGGACAAATTTCCGAAACAAATGTGTACAATTGGTTTCAGAACAGGCGCGCTCGATCAAAGAGGAAGCAACAAAATGCAGCATGTAACCATGCTGAATCAGAAGTGGATACAGAAGTTGATTCACCTAAGGACAAAAAAACTAGACCGGAGGAAACGTTTCAGTCCCAGCAGAACTCAGCTCAACGGACTGAAGATTTGTGCTTCCAGAGCCAGGAGATAAGTTCCGACCTGCATTTCTTGGATCCGCATACCACCAAGGCAGAAAAGATGTTCCCGTCACACAGCGGTTTAAGGAGTTCTAGACATTTAAGCGAAATGGCCTTCTATGATGATGTGCTCTCAATCTGCAGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

319

Amino Acids

37.02

Weight (kDa)

6.42

Isoelectric Point (pI)

57.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	837
AccII	CGCG	1 cut(s)	648
AciI	CCGC	3 cut(s)	487, 845, 885
AclI	AACGTT	1 cut(s)	755
AclWI	GGATC	2 cut(s)	836, 849
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	2 cut(s)	516, 606
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	2 cut(s)	437, 626
AfeI	AGCGCT	1 cut(s)	504
AfiI	CCNNNNNNNGG	2 cut(s)	486, 811
AgsI	TTSAA	3 cut(s)	63, 171, 211
AjnI	CCWGG	2 cut(s)	479, 810
AluBI	AGCT	4 cut(s)	370, 511, 589, 779
AluI	AGCT	4 cut(s)	370, 511, 589, 779
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	2 cut(s)	164, 317
AlwI	GGATC	2 cut(s)	836, 849
AlwNI	CAGNNNCTG	1 cut(s)	244
Aor51HI	AGCGCT	1 cut(s)	504
AoxI	GGCC	3 cut(s)	73, 463, 918
ApeKI	GCWGC	7 cut(s)	238, 253, 367, 484, 505, 508, 677
ApoI	RAATTY	2 cut(s)	516, 606
ArsI	GACNNNNNNTTYG	2 cut(s)	778, 810
Asp700I	GAANNNNTTC	1 cut(s)	756
AspLEI	GCGC	3 cut(s)	505, 648, 650
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	313, 571, 714
AxyI	CCTNAGG	1 cut(s)	726
BaeI	ACNNNNGTAYC	2 cut(s)	699, 732
BalI	TGGCCA	1 cut(s)	465
BamHI	GGATCC	1 cut(s)	841
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	7 cut(s)	250, 265, 379, 492, 496, 520, 689
BccI	CCATC	4 cut(s)	104, 217, 256, 418
BciT130I	CCWGG	2 cut(s)	481, 812
BciVI	GTATCC	1 cut(s)	700
BcoDI	GTCTC	2 cut(s)	164, 317
BfaI	CTAG	2 cut(s)	741, 900
BfmI	CTRYAG	3 cut(s)	193, 506, 946
BfoI	RGCGCY	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	837
BfuI	GTATCC	1 cut(s)	700
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	7 cut(s)	239, 254, 368, 485, 506, 509, 678
BlpI	GCTNAGC	1 cut(s)	590
BlsI	GCNGC	7 cut(s)	240, 255, 369, 486, 507, 510, 679
Bme1390I	CCNGG	2 cut(s)	481, 812
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	843
BmrFI	CCNGG	2 cut(s)	481, 812
BmsI	GCATC	1 cut(s)	369
BplI	GAGNNNNNCTC	2 cut(s)	566, 598
Bpu1102I	GCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	542
BsaJI	CCNNGG	2 cut(s)	186, 855
BsaWI	WCCGGW	1 cut(s)	745
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 811
Bse1I	ACTGG	1 cut(s)	466
Bse21I	CCTNAGG	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	481, 812
BseDI	CCNNGG	2 cut(s)	186, 855
BseGI	GGATG	3 cut(s)	65, 429, 455
BseLI	CCNNNNNNNGG	2 cut(s)	486, 811
BseMII	CTCAG	5 cut(s)	175, 320, 576, 581, 789
BseNI	ACTGG	1 cut(s)	466
BsePI	GCGCGC	1 cut(s)	646
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	7 cut(s)	250, 265, 379, 492, 496, 520, 689
BseYI	CCCAGC	2 cut(s)	399, 765
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	3 cut(s)	75, 465, 920
BsiHKAI	GWGCWC	1 cut(s)	939
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	1 cut(s)	748
BslI	CCNNNNNNNGG	2 cut(s)	486, 811
BsmAI	GTCTC	2 cut(s)	164, 317
BsmFI	GGGAC	1 cut(s)	748
BsnI	GGCC	3 cut(s)	75, 465, 920
Bsp1286I	GDGCHC	1 cut(s)	939
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	6 cut(s)	406, 442, 567, 576, 653, 841
Bsp1720I	GCTNAGC	1 cut(s)	590
BspACI	CCGC	3 cut(s)	487, 845, 885
BspANI	GGCC	3 cut(s)	75, 465, 920
BspCNI	CTCAG	5 cut(s)	174, 321, 577, 582, 788
BspFNI	CGCG	1 cut(s)	648
BspLI	GGNNCC	1 cut(s)	843
BspMAI	CTGCAG	2 cut(s)	510, 950
BspMI	ACCTGC	1 cut(s)	837
BspPI	GGATC	2 cut(s)	836, 849
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	2 cut(s)	186, 855
BssHII	GCGCGC	1 cut(s)	646
BssMI	GATC	6 cut(s)	406, 442, 567, 576, 653, 841
BssT1I	CCWWGG	1 cut(s)	855
Bst2UI	CCWGG	2 cut(s)	481, 812
Bst4CI	ACNGT	3 cut(s)	158, 194, 318
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	624
BstC8I	GCNNGC	2 cut(s)	596, 648
BstDEI	CTNAG	6 cut(s)	161, 329, 585, 590, 726, 775
BstF5I	GGATG	3 cut(s)	65, 429, 455
BstFNI	CGCG	1 cut(s)	648
BstH2I	RGCGCY	1 cut(s)	506
BstHHI	GCGC	3 cut(s)	505, 648, 650
BstKTI	GATC	6 cut(s)	409, 445, 570, 579, 656, 844
BstMAI	GTCTC	2 cut(s)	164, 317
BstMBI	GATC	6 cut(s)	406, 442, 567, 576, 653, 841
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 595, 807
BstNI	CCWGG	2 cut(s)	481, 812
BstNSI	RCATGY	1 cut(s)	684
BstSCI	CCNGG	2 cut(s)	479, 810
BstSFI	CTRYAG	3 cut(s)	193, 506, 946
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	7 cut(s)	250, 265, 379, 492, 496, 520, 689
BstX2I	RGATCY	2 cut(s)	406, 841
BstYI	RGATCY	2 cut(s)	406, 841
Bsu36I	CCTNAGG	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	3 cut(s)	75, 465, 920
BtsCI	GGATG	3 cut(s)	65, 429, 455
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	3 cut(s)	154, 393, 459
BveI	ACCTGC	1 cut(s)	837
Cac8I	GCNNGC	2 cut(s)	596, 648
CaiI	CAGNNNCTG	1 cut(s)	244
CfoI	GCGC	3 cut(s)	505, 648, 650
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	436, 625
CviAII	CATG	4 cut(s)	599, 681, 689, 954
CviJI	RGCY	9 cut(s)	75, 370, 465, 511, 589, 594, 779, 810, 920
CviKI_1	RGCY	9 cut(s)	75, 370, 465, 511, 589, 594, 779, 810, 920
CviQI	GTAC	2 cut(s)	436, 625
DdeI	CTNAG	6 cut(s)	161, 329, 585, 590, 726, 775
DpnI	GATC	6 cut(s)	408, 444, 569, 578, 655, 843
DpnII	GATC	6 cut(s)	406, 442, 567, 576, 653, 841
EaeI	YGGCCR	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	855
Eco47III	AGCGCT	1 cut(s)	504
Eco57I	CTGAAG	1 cut(s)	810
Eco81I	CCTNAGG	1 cut(s)	726
EcoRII	CCWGG	2 cut(s)	479, 810
EcoT14I	CCWWGG	1 cut(s)	855
ErhI	CCWWGG	1 cut(s)	855
FaeI	CATG	4 cut(s)	602, 684, 692, 957
FaqI	GGGAC	1 cut(s)	748
FatI	CATG	4 cut(s)	598, 680, 688, 953
Fnu4HI	GCNGC	7 cut(s)	239, 254, 368, 485, 506, 509, 678
FokI	GGATG	3 cut(s)	52, 436, 442
Fsp4HI	GCNGC	7 cut(s)	239, 254, 368, 485, 506, 509, 678
FspBI	CTAG	2 cut(s)	741, 900
GlaI	GCGC	3 cut(s)	504, 647, 649
GluI	GCNGC	7 cut(s)	239, 254, 368, 485, 506, 509, 678
GsaI	CCCAGC	2 cut(s)	403, 769
HaeII	RGCGCY	1 cut(s)	506
HaeIII	GGCC	3 cut(s)	75, 465, 920
HapII	CCGG	1 cut(s)	746
HhaI	GCGC	3 cut(s)	505, 648, 650
Hin1II	CATG	4 cut(s)	602, 684, 692, 957
Hin6I	GCGC	3 cut(s)	503, 646, 648
HinP1I	GCGC	3 cut(s)	503, 646, 648
HinfI	GANTC	6 cut(s)	325, 417, 430, 493, 695, 719
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	3 cut(s)	313, 571, 714
Hpy166II	GTNNAC	2 cut(s)	492, 625
Hpy188I	TCNGA	6 cut(s)	330, 586, 613, 639, 700, 826
Hpy188III	TCNNGA	5 cut(s)	211, 421, 521, 805, 900
Hpy8I	GTNNAC	2 cut(s)	492, 625
HpyAV	CCTTC	2 cut(s)	292, 931
HpyCH4III	ACNGT	3 cut(s)	158, 194, 318
HpyCH4IV	ACGT	1 cut(s)	755
HpyCH4V	TGCA	7 cut(s)	344, 382, 413, 508, 677, 832, 948
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 595, 807
HpyF3I	CTNAG	6 cut(s)	161, 329, 585, 590, 726, 775
HpySE526I	ACGT	1 cut(s)	755
Hsp92II	CATG	4 cut(s)	602, 684, 692, 957
HspAI	GCGC	3 cut(s)	503, 646, 648
Kzo9I	GATC	6 cut(s)	406, 442, 567, 576, 653, 841
LmnI	GCTCC	1 cut(s)	516
Lsp1109I	GCAGC	7 cut(s)	250, 265, 379, 492, 496, 520, 689
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	2 cut(s)	741, 900
MaeII	ACGT	1 cut(s)	755
MaeIII	GTNAC	2 cut(s)	683, 876
MalI	GATC	6 cut(s)	408, 444, 569, 578, 655, 843
MboI	GATC	6 cut(s)	406, 442, 567, 576, 653, 841
MboII	GAAGA	4 cut(s)	127, 130, 577, 803
MfeI	CAATTG	1 cut(s)	628
MflI	RGATCY	2 cut(s)	406, 841
MhlI	GDGCHC	1 cut(s)	939
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	5 cut(s)	25, 471, 516, 606, 628
MluNI	TGGCCA	1 cut(s)	465
MlyI	GAGTC	3 cut(s)	319, 426, 487
MmeI	TCCRAC	3 cut(s)	300, 521, 849
MnlI	CCTC	9 cut(s)	79, 181, 259, 275, 324, 401, 592, 654, 742
Mox20I	TGGCCA	1 cut(s)	465
MroXI	GAANNNNTTC	1 cut(s)	756
MscI	TGGCCA	1 cut(s)	465
MseI	TTAA	2 cut(s)	890, 908
Msp20I	TGGCCA	1 cut(s)	465
MspA1I	CMGCKG	2 cut(s)	487, 885
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	2 cut(s)	481, 812
MunI	CAATTG	1 cut(s)	628
MvaI	CCWGG	2 cut(s)	481, 812
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	3 cut(s)	350, 595, 807
NdeII	GATC	6 cut(s)	406, 442, 567, 576, 653, 841
NlaIII	CATG	4 cut(s)	602, 684, 692, 957
NlaIV	GGNNCC	1 cut(s)	843
NmuCI	GTSAC	1 cut(s)	876
NspI	RCATGY	1 cut(s)	684
PauI	GCGCGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	3 cut(s)	430, 695, 719
PkrI	GCNGC	7 cut(s)	240, 255, 369, 486, 507, 510, 679
PleI	GAGTC	3 cut(s)	319, 425, 487
PpsI	GAGTC	3 cut(s)	319, 425, 487
Psp1406I	AACGTT	1 cut(s)	755
Psp6I	CCWGG	2 cut(s)	479, 810
PspFI	CCCAGC	2 cut(s)	399, 765
PspGI	CCWGG	2 cut(s)	479, 810
PspN4I	GGNNCC	1 cut(s)	843
PspPI	GGNCC	1 cut(s)	74
PstI	CTGCAG	2 cut(s)	510, 950
PstNI	CAGNNNCTG	1 cut(s)	244
PsuI	RGATCY	2 cut(s)	406, 841
PteI	GCGCGC	1 cut(s)	646
RsaI	GTAC	2 cut(s)	437, 626
RsaNI	GTAC	2 cut(s)	436, 625
SaqAI	TTAA	2 cut(s)	890, 908
SatI	GCNGC	7 cut(s)	239, 254, 368, 485, 506, 509, 678
Sau3AI	GATC	6 cut(s)	406, 442, 567, 576, 653, 841
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	3 cut(s)	319, 426, 487
ScrFI	CCNGG	2 cut(s)	481, 812
SduI	GDGCHC	1 cut(s)	939
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	3 cut(s)	193, 506, 946
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	5 cut(s)	25, 471, 516, 606, 628
SsiI	CCGC	3 cut(s)	487, 845, 885
SspMI	CTAG	2 cut(s)	741, 900
StyD4I	CCNGG	2 cut(s)	479, 810
StyI	CCWWGG	1 cut(s)	855
TaaI	ACNGT	3 cut(s)	158, 194, 318
TaiI	ACGT	1 cut(s)	758
TaqI	TCGA	2 cut(s)	534, 652
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	5 cut(s)	25, 471, 516, 606, 628
TatI	WGTACW	2 cut(s)	435, 624
TfiI	GAWTC	3 cut(s)	430, 695, 719
Tru1I	TTAA	2 cut(s)	890, 908
Tru9I	TTAA	2 cut(s)	890, 908
TscAI	CASTG	3 cut(s)	161, 400, 466
TseFI	GTSAC	1 cut(s)	876
TseI	GCWGC	7 cut(s)	238, 253, 367, 484, 505, 508, 677
Tsp45I	GTSAC	1 cut(s)	876
TspDTI	ATGAA	2 cut(s)	32, 327
TspGWI	ACGGA	1 cut(s)	799
TspRI	CASTG	3 cut(s)	161, 400, 466
XapI	RAATTY	2 cut(s)	516, 606
XbaI	TCTAGA	1 cut(s)	899
XceI	RCATGY	1 cut(s)	684
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	2 cut(s)	741, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.