Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8032686.1

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Forward (+)

47 .. 427

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8032686.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgaagatgggaagtgtgtatggcgatttgatggcatctggtggcagcaaggtaactgcaaggcagcggtggacgccaacaagtttgcaacttgaaatccttgagcgtatctatgatgaagccaatggaactccaggaaagcacagggtcaaagagattaccatagaactttcacaacatggccaagttaccgaaactaatgtttacaattggttccagaacagaagagctcgttcaaagagaaagcaatcggtgccagcacggaacattacagaatcagatctagagcctgaagttatttctcccaaggataagaagacaaaaccggaagacatgtactttcaaagtcctgattcaggtattgaaaatttctttacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

126

Amino Acids

14.44

Weight (kDa)

8.89

Isoelectric Point (pI)

70.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	253
AciI	CCGC	1 cut(s)	67
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	4 cut(s)	95, 237, 344, 365
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
Alw21I	GWGCWC	1 cut(s)	232
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	45, 64
ApoI	RAATTY	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	2 cut(s)	323, 336
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	57, 76
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	135
BfaI	CTAG	1 cut(s)	284
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	2 cut(s)	46, 65
BlsI	GCNGC	2 cut(s)	47, 66
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	215, 255
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	44
BpiI	GAAGAC	2 cut(s)	323, 336
BpmI	CTGGAG	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	57, 76
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	356
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	215, 255
BspQI	GCTCTTC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	220
BstACI	GRCGYC	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	378
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 253
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	57, 76
BstV2I	GAAGAC	2 cut(s)	323, 336
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	258
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	2 cut(s)	179, 334
CviJI	RGCY	4 cut(s)	122, 183, 230, 289
CviKI_1	RGCY	4 cut(s)	122, 183, 230, 289
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	182, 337
FaiI	YATR	5 cut(s)	21, 114, 164, 180, 335
FatI	CATG	2 cut(s)	178, 333
Fnu4HI	GCNGC	2 cut(s)	46, 65
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	46, 65
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	2 cut(s)	46, 65
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	1 cut(s)	326
HgaI	GACGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	182, 337
HinfI	GANTC	2 cut(s)	275, 353
HpaII	CCGG	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	72, 205
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	3 cut(s)	217, 284, 350
Hpy8I	GTNNAC	2 cut(s)	72, 205
HpyCH4V	TGCA	2 cut(s)	59, 88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 253
HpyF3I	CTNAG	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	182, 337
Kzo9I	GATC	1 cut(s)	280
LguI	GCTCTTC	1 cut(s)	220
Lsp1109I	GCAGC	2 cut(s)	57, 76
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	284
MaeIII	GTNAC	2 cut(s)	52, 187
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	4 cut(s)	16, 237, 328, 341
MfeI	CAATTG	1 cut(s)	208
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	2 cut(s)	208, 367
MluNI	TGGCCA	1 cut(s)	183
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	73, 253
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	2 cut(s)	182, 337
NlaIV	GGNNCC	2 cut(s)	215, 255
NspI	RCATGY	1 cut(s)	337
PciI	ACATGT	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	275, 353
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	47, 66
PscI	ACATGT	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	215, 255
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	220
SatI	GCNGC	2 cut(s)	46, 65
Sau3AI	GATC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	3 cut(s)	54, 232, 361
SfaNI	GCATC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	208, 367
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	306
TasI	AATT	2 cut(s)	208, 367
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	2 cut(s)	275, 353
TseI	GCWGC	2 cut(s)	45, 64
TspDTI	ATGAA	2 cut(s)	17, 132
TspGWI	ACGGA	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	1 cut(s)	367
XbaI	TCTAGA	1 cut(s)	283
XceI	RCATGY	1 cut(s)	337
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.