Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Reverse (-)

8700686 .. 8703458

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G008670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGAGTCAGGATGGGTAATCTGTACTGTGATCCACTGATGACATCTGTTGGCCACAAAATCACCGCCAGACAGCGGTGGACTCCAACACCGGTGCAGCTACAGATTCTGGAGCAATTGTTCGATCAAGGGAATGGAACTCCAAGCAAACAAAAGATCAAGGAGATAACCTCTGAACTGAGCCAGCACGGTCAAATTTCTGAAACCAATGTTTACAATTGGTTCCAGAATAGGCGTGCTCGATCAAAGAGGAAGCAACAGAATGCAACATCCAACAATGCTGAATCAGAAGTGGAGACTGAAGTTGACTCTCCCAAGGACAAGAAAAAAGGACCTCAGGATCAACTGTTACAGTCCCAACAGAACACATCAGCTCAAAGGGCTGAAGACTTGTGCTTTCAGAACCCTGAGATGAGTTCTGACCTGCATTTCTTGGATCCACAGGGCATTAAAGAAGACAAAATGTTTGCATCCAGCAGCGATTTAAGGCCTTCCAGAGGTTTAGGCCATATGTCATTCTATGATGAAGTGCTCTCAAGCTCAAGAGGAAATGAGCTGATGACAGGAAAGATGGAAGTGGGAGGGAGCTATAATCTTTTCCAGCAGGCAGAAGACTACAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

208

Amino Acids

23.57

Weight (kDa)

5.85

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	24 - 84	8.8e-17	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	432
AciI	CCGC	2 cut(s)	66, 76
AclWI	GGATC	4 cut(s)	26, 348, 431, 444
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	2 cut(s)	321, 405
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	75, 497
AgeI	ACCGGT	1 cut(s)	91
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	5 cut(s)	100, 374, 540, 556, 588
AluI	AGCT	5 cut(s)	100, 374, 540, 556, 588
Alw21I	GWGCWC	2 cut(s)	241, 534
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	4 cut(s)	26, 348, 431, 444
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	3 cut(s)	52, 488, 505
ApeKI	GCWGC	2 cut(s)	97, 477
ApoI	RAATTY	1 cut(s)	195
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AsiGI	ACCGGT	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	332
AxyI	CCTNAGG	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	436
BbsI	GAAGAC	3 cut(s)	393, 462, 618
Bbv12I	GWGCWC	2 cut(s)	241, 534
BbvI	GCAGC	2 cut(s)	109, 489
BccI	CCATC	2 cut(s)	7, 565
BcoDI	GTCTC	1 cut(s)	290
BfmI	CTRYAG	2 cut(s)	101, 616
BfuAI	ACCTGC	1 cut(s)	432
BisI	GCNGC	2 cut(s)	98, 478
BlsI	GCNGC	2 cut(s)	99, 479
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	2 cut(s)	224, 438
BmsI	GCATC	1 cut(s)	479
BpiI	GAAGAC	3 cut(s)	393, 462, 618
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	1 cut(s)	131
BpuEI	CTTGAG	2 cut(s)	520, 526
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 497
Bse118I	RCCGGY	1 cut(s)	91
Bse21I	CCTNAGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	3 cut(s)	18, 269, 470
BseLI	CCNNNNNNNGG	2 cut(s)	75, 497
BseMII	CTCAG	3 cut(s)	170, 350, 399
BseXI	GCAGC	2 cut(s)	109, 489
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	3 cut(s)	54, 490, 507
BshTI	ACCGGT	1 cut(s)	91
BsiHKAI	GWGCWC	2 cut(s)	241, 534
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	75, 497
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	3 cut(s)	54, 490, 507
Bsp1286I	GDGCHC	2 cut(s)	241, 534
Bsp143I	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
BspACI	CCGC	2 cut(s)	66, 76
BspANI	GGCC	3 cut(s)	54, 490, 507
BspCNI	CTCAG	3 cut(s)	171, 349, 400
BspLI	GGNNCC	2 cut(s)	224, 438
BspMI	ACCTGC	1 cut(s)	432
BspPI	GGATC	4 cut(s)	26, 348, 431, 444
BsrFI	RCCGGY	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	4 cut(s)	29, 191, 348, 354
BstC8I	GCNNGC	3 cut(s)	185, 237, 606
BstDEI	CTNAG	3 cut(s)	179, 336, 408
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstF5I	GGATG	3 cut(s)	18, 269, 470
BstKTI	GATC	6 cut(s)	34, 127, 159, 245, 343, 439
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	625
BstSFI	CTRYAG	2 cut(s)	101, 616
BstV1I	GCAGC	2 cut(s)	109, 489
BstV2I	GAAGAC	3 cut(s)	393, 462, 618
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	54, 490, 507
BtsCI	GGATG	3 cut(s)	18, 269, 470
BtsIMutI	CAGTG	1 cut(s)	35
BveI	ACCTGC	1 cut(s)	432
Cac8I	GCNNGC	3 cut(s)	185, 237, 606
CaiI	CAGNNNCTG	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	25
CspAI	ACCGGT	1 cut(s)	91
CviAII	CATG	1 cut(s)	622
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	3 cut(s)	179, 336, 408
DpnI	GATC	6 cut(s)	33, 126, 158, 244, 342, 438
DpnII	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
EaeI	YGGCCR	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	2 cut(s)	321, 405
Eco81I	CCTNAGG	1 cut(s)	336
EcoNI	CCTNNNNNAGG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	625
FaiI	YATR	5 cut(s)	510, 512, 522, 591, 623
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	1 cut(s)	621
FauNDI	CATATG	1 cut(s)	510
Fnu4HI	GCNGC	2 cut(s)	98, 478
FokI	GGATG	3 cut(s)	25, 256, 457
Fsp4HI	GCNGC	2 cut(s)	98, 478
GluI	GCNGC	2 cut(s)	98, 478
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	3 cut(s)	54, 490, 507
HapII	CCGG	1 cut(s)	92
Hin1II	CATG	1 cut(s)	625
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	5 cut(s)	6, 82, 106, 284, 308
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	81, 214, 307
Hpy188I	TCNGA	5 cut(s)	175, 202, 289, 402, 421
Hpy188III	TCNNGA	6 cut(s)	10, 110, 226, 338, 495, 543
Hpy8I	GTNNAC	3 cut(s)	81, 214, 307
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	4 cut(s)	29, 191, 348, 354
HpyCH4V	TGCA	4 cut(s)	97, 266, 427, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	3 cut(s)	179, 336, 408
Hsp92II	CATG	1 cut(s)	625
Kzo9I	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
LmnI	GCTCC	2 cut(s)	112, 585
Lsp1109I	GCAGC	2 cut(s)	109, 489
LweI	GCATC	1 cut(s)	479
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	6 cut(s)	33, 126, 158, 244, 342, 438
MboI	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
MboII	GAAGA	3 cut(s)	398, 467, 623
MfeI	CAATTG	2 cut(s)	116, 217
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	2 cut(s)	241, 534
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	3 cut(s)	116, 195, 217
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	3 cut(s)	15, 76, 302
MmeI	TCCRAC	2 cut(s)	110, 297
MnlI	CCTC	6 cut(s)	181, 243, 345, 491, 539, 575
Mox20I	TGGCCA	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	2 cut(s)	450, 485
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	1 cut(s)	92
MunI	CAATTG	2 cut(s)	116, 217
Mva1269I	GAATGC	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
NlaIII	CATG	1 cut(s)	625
NlaIV	GGNNCC	2 cut(s)	224, 438
NspI	RCATGY	1 cut(s)	625
PceI	AGGCCT	1 cut(s)	490
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	106, 284
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	99, 479
PleI	GAGTC	3 cut(s)	14, 76, 302
PpsI	GAGTC	3 cut(s)	14, 76, 302
PpuMI	RGGWCCY	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	332
PspN4I	GGNNCC	2 cut(s)	224, 438
PspPI	GGNCC	1 cut(s)	332
PspPPI	RGGWCCY	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	450, 485
SatI	GCNGC	2 cut(s)	98, 478
Sau3AI	GATC	6 cut(s)	31, 124, 156, 242, 340, 436
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	3 cut(s)	15, 76, 302
SduI	GDGCHC	2 cut(s)	241, 534
SetI	ASST	9 cut(s)	102, 173, 337, 376, 426, 502, 542, 558, 590
SfaNI	GCATC	1 cut(s)	479
SfcI	CTRYAG	2 cut(s)	101, 616
SgrAI	CRCCGGYG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	2 cut(s)	535, 541
SmoI	CTYRAG	2 cut(s)	535, 541
Sse9I	AATT	3 cut(s)	116, 195, 217
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	2 cut(s)	66, 76
StuI	AGGCCT	1 cut(s)	490
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	4 cut(s)	29, 191, 348, 354
TaqI	TCGA	2 cut(s)	123, 241
TasI	AATT	3 cut(s)	116, 195, 217
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	106, 284
Tru1I	TTAA	2 cut(s)	450, 485
Tru9I	TTAA	2 cut(s)	450, 485
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	2 cut(s)	97, 477
TspDTI	ATGAA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	495
XapI	RAATTY	1 cut(s)	195
XceI	RCATGY	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.