Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Forward (+)

17805446 .. 17808091

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G183300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGATGGAGTGGGAGAAGCTGCAACAGAAAGAGCATGAAATGGATGGGCAGGCGAATGGGAATGGAGGAGTGTTGTATGTGAAGGTGATGACTGATGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTATGCCTCCATTTGTGAGCAGCTTGTTGAGATGCACAAGAACCTTACAGCCCAGCAAGATCTTGCAGGTGTCCGGATGGGAAATCTGTACTGCGACCCGCTGATGACATCTGCGGGACACAAAATTACTGCCAGACAGAGGTGGACTCCAACACCTGTGCAGCTACAAATTCTGGAGCGCTTATTTGAACAAGGGAATGGAACTCCAAGCAAGCAAAAGATCAAAGAGATAACCTCTGAGCTGAGCCAGCACGGGCAAATTTCTGAAACGAATGTTTACAATTGGTTCCAGAACCGGCGTGCTCGATCAAAAAGGAAGCAACAAAATGCAGCATGTAACCATGCTGAATCAGAAGTAGAGACAGAAGTGGACTCACCAAAGGACAAGAAAACAAGACCAGAGGAACTGTTTCAGTCCCAGCAGAACTCAGCTCAAAGGACTGAAGATTTGTGTTTCCAGAGTCCTGAGATAAGTTCTGACCTGCATTTCTTGGATCCACAGACCACGAAGACAGATAAAATGTTCCCATCAAACAGCGGTTTAAGGACTTCCAGACATTTAAGCGAAATGTCATTCTATGATGAAGTGCTATCAAACTCAAGAAATGACCTCATGACTGGAAAGATTGAAGCAGGCAACTACAATCTTTTTCAGCAGGCAGAAGACTACGGCATGACCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

272

Amino Acids

31.03

Weight (kDa)

5.59

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
Acc36I	ACCTGC	2 cut(s)	188, 621
AccIII	TCCGGA	1 cut(s)	204
AciI	CCGC	3 cut(s)	230, 245, 669
AclWI	GGATC	2 cut(s)	620, 633
AcsI	RAATTY	2 cut(s)	300, 390
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	1 cut(s)	221
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgeI	ACCGGT	1 cut(s)	809
AgsI	TTSAA	2 cut(s)	320, 761
AluBI	AGCT	5 cut(s)	19, 154, 295, 373, 563
AluI	AGCT	5 cut(s)	19, 154, 295, 373, 563
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	2 cut(s)	101, 485
AlwI	GGATC	2 cut(s)	620, 633
Aor13HI	TCCGGA	1 cut(s)	204
Aor51HI	AGCGCT	1 cut(s)	311
ApeKI	GCWGC	4 cut(s)	19, 151, 292, 461
ApoI	RAATTY	2 cut(s)	300, 390
ArsI	GACNNNNNNTTYG	2 cut(s)	562, 594
AsiGI	ACCGGT	1 cut(s)	809
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	97, 498
BamHI	GGATCC	1 cut(s)	625
BbsI	GAAGAC	2 cut(s)	647, 801
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	4 cut(s)	6, 163, 304, 473
BccI	CCATC	3 cut(s)	38, 202, 667
BcoDI	GTCTC	2 cut(s)	101, 485
BfoI	RGCGCY	1 cut(s)	313
BfuAI	ACCTGC	2 cut(s)	188, 621
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	4 cut(s)	20, 152, 293, 462
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	4 cut(s)	21, 153, 294, 463
BmiI	GGNNCC	2 cut(s)	419, 627
BmsI	GCATC	1 cut(s)	153
BpiI	GAAGAC	2 cut(s)	647, 801
BplI	GAGNNNNNCTC	4 cut(s)	262, 294, 350, 382
BpmI	CTGGAG	1 cut(s)	326
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	715
BsaWI	WCCGGW	2 cut(s)	204, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse118I	RCCGGY	2 cut(s)	426, 809
Bse1I	ACTGG	1 cut(s)	754
BseAI	TCCGGA	1 cut(s)	204
BseGI	GGATG	2 cut(s)	49, 213
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMII	CTCAG	4 cut(s)	360, 365, 573, 588
BseNI	ACTGG	1 cut(s)	754
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	4 cut(s)	6, 163, 304, 473
BseYI	CCCAGC	2 cut(s)	183, 549
BsgI	GTGCAG	1 cut(s)	311
BshTI	ACCGGT	1 cut(s)	809
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	3 cut(s)	205, 427, 810
BslFI	GGGAC	2 cut(s)	261, 532
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmAI	GTCTC	2 cut(s)	101, 485
BsmFI	GGGAC	2 cut(s)	261, 532
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp13I	TCCGGA	1 cut(s)	204
Bsp143I	GATC	4 cut(s)	190, 351, 437, 625
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	3 cut(s)	230, 245, 669
BspCNI	CTCAG	4 cut(s)	361, 366, 572, 589
BspEI	TCCGGA	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	2 cut(s)	419, 627
BspMI	ACCTGC	2 cut(s)	188, 621
BspPI	GGATC	2 cut(s)	620, 633
BsrFI	RCCGGY	2 cut(s)	426, 809
BsrI	ACTGG	1 cut(s)	754
BssAI	RCCGGY	2 cut(s)	426, 809
BssMI	GATC	4 cut(s)	190, 351, 437, 625
Bst4CI	ACNGT	1 cut(s)	540
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	7 cut(s)	51, 119, 344, 380, 432, 766, 789
BstDEI	CTNAG	4 cut(s)	369, 374, 559, 597
BstF5I	GGATG	2 cut(s)	49, 213
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	4 cut(s)	193, 354, 440, 628
BstMAI	GTCTC	2 cut(s)	101, 485
BstMBI	GATC	4 cut(s)	190, 351, 437, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 379
BstNSI	RCATGY	1 cut(s)	468
BstV1I	GCAGC	4 cut(s)	6, 163, 304, 473
BstV2I	GAAGAC	2 cut(s)	647, 801
BstX2I	RGATCY	2 cut(s)	190, 625
BstYI	RGATCY	2 cut(s)	190, 625
BtsCI	GGATG	2 cut(s)	49, 213
BveI	ACCTGC	2 cut(s)	188, 621
Cac8I	GCNNGC	7 cut(s)	51, 119, 344, 380, 432, 766, 789
CciI	TCATGA	1 cut(s)	744
CfoI	GCGC	1 cut(s)	312
Cfr10I	RCCGGY	2 cut(s)	426, 809
Csp6I	GTAC	1 cut(s)	220
CspAI	ACCGGT	1 cut(s)	809
CviAII	CATG	5 cut(s)	35, 465, 473, 745, 805
CviJI	RGCY	7 cut(s)	19, 154, 182, 295, 373, 378, 563
CviKI_1	RGCY	7 cut(s)	19, 154, 182, 295, 373, 378, 563
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	4 cut(s)	369, 374, 559, 597
DpnI	GATC	4 cut(s)	192, 353, 439, 627
DpnII	GATC	4 cut(s)	190, 351, 437, 625
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco47III	AGCGCT	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	594
FaeI	CATG	5 cut(s)	38, 468, 476, 748, 808
FaiI	YATR	8 cut(s)	36, 78, 135, 466, 474, 711, 746, 806
FaqI	GGGAC	2 cut(s)	261, 532
FatI	CATG	5 cut(s)	34, 464, 472, 744, 804
FauI	CCCGC	2 cut(s)	237, 238
Fnu4HI	GCNGC	4 cut(s)	20, 152, 293, 462
FokI	GGATG	2 cut(s)	56, 220
Fsp4HI	GCNGC	4 cut(s)	20, 152, 293, 462
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	4 cut(s)	20, 152, 293, 462
GsaI	CCCAGC	2 cut(s)	187, 553
GsuI	CTGGAG	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	313
HapII	CCGG	3 cut(s)	205, 427, 810
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	5 cut(s)	38, 468, 476, 748, 808
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	5 cut(s)	109, 277, 479, 503, 592
HpaII	CCGG	3 cut(s)	205, 427, 810
HphI	GGTGA	2 cut(s)	97, 498
Hpy166II	GTNNAC	3 cut(s)	276, 409, 502
Hpy188I	TCNGA	4 cut(s)	370, 397, 484, 610
Hpy188III	TCNNGA	8 cut(s)	205, 305, 421, 589, 596, 684, 732, 745
Hpy8I	GTNNAC	3 cut(s)	276, 409, 502
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4V	TGCA	6 cut(s)	22, 166, 197, 292, 461, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 379
HpyF3I	CTNAG	4 cut(s)	369, 374, 559, 597
Hsp92II	CATG	5 cut(s)	38, 468, 476, 748, 808
HspAI	GCGC	1 cut(s)	310
Kpn2I	TCCGGA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	190, 351, 437, 625
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	4 cut(s)	6, 163, 304, 473
LweI	GCATC	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	4 cut(s)	192, 353, 439, 627
MboI	GATC	4 cut(s)	190, 351, 437, 625
MboII	GAAGA	4 cut(s)	104, 587, 652, 806
MfeI	CAATTG	2 cut(s)	101, 412
MflI	RGATCY	2 cut(s)	190, 625
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	6 cut(s)	101, 123, 255, 300, 390, 412
MlyI	GAGTC	4 cut(s)	103, 271, 497, 601
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	6 cut(s)	59, 148, 264, 376, 526, 752
MroI	TCCGGA	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	2 cut(s)	674, 692
MspA1I	CMGCKG	2 cut(s)	232, 669
MspI	CCGG	3 cut(s)	205, 427, 810
MunI	CAATTG	2 cut(s)	101, 412
MwoI	GCNNNNNNNGC	2 cut(s)	134, 379
NdeII	GATC	4 cut(s)	190, 351, 437, 625
NlaIII	CATG	5 cut(s)	38, 468, 476, 748, 808
NlaIV	GGNNCC	2 cut(s)	419, 627
NspI	RCATGY	1 cut(s)	468
PagI	TCATGA	1 cut(s)	744
PaqCI	CACCTGC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	479
PinAI	ACCGGT	1 cut(s)	809
PkrI	GCNGC	4 cut(s)	21, 153, 294, 463
PleI	GAGTC	4 cut(s)	103, 271, 497, 600
PpsI	GAGTC	4 cut(s)	103, 271, 497, 600
PspFI	CCCAGC	2 cut(s)	183, 549
PspN4I	GGNNCC	2 cut(s)	419, 627
PsuI	RGATCY	2 cut(s)	190, 625
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	674, 692
SatI	GCNGC	4 cut(s)	20, 152, 293, 462
Sau3AI	GATC	4 cut(s)	190, 351, 437, 625
SchI	GAGTC	4 cut(s)	103, 271, 497, 601
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	730
SmoI	CTYRAG	1 cut(s)	730
Sse9I	AATT	6 cut(s)	101, 123, 255, 300, 390, 412
SsiI	CCGC	3 cut(s)	230, 245, 669
TaaI	ACNGT	1 cut(s)	540
TaqI	TCGA	1 cut(s)	436
TasI	AATT	6 cut(s)	101, 123, 255, 300, 390, 412
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	674, 692
Tru9I	TTAA	2 cut(s)	674, 692
TseI	GCWGC	4 cut(s)	19, 151, 292, 461
TspDTI	ATGAA	2 cut(s)	51, 729
XapI	RAATTY	2 cut(s)	300, 390
XceI	RCATGY	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.