Rw7G024960

WUSCHEL-related homeobox 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002233
Physical Location & Seq
Forward (+)
31144776 .. 31146931
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G024960.1

Sequence Viewer

Length: 576 bp
ATGGAGGGGCAGAGAAGAGTGTTGGCAATGAAAATGGAGAAGCTGAAGACTCAGAACCCAGATGGGTTTTGCCGGAAGGTCATGACGGACGACCAAGTCGAGCAACTCCGGAAACAGATCGCCGTCTACGCCGTCATCTGTGAGCAGCTTGTTGATATGCACAAGGCCTTCACTGCCCAACAGGATCTTTCTGGAATGAAGATGGGAAGTGTGTATGGCGATTTGATGGCATCTGGTGGCAGCCAGGTAACTGCAAGGCAGCGGTGGACGCCAACAAGTTTGCAACTTGAAATCCTTGAGCGTATCTATGATGAAGCCAATGGAACTCCAGGAAAGCACAGGGTCAAAGAGATTACCATAGAACTTTCACAACATGGCCAAGTTACCGAAACTAATGTTTACAATTGGTTCCAGAACAGAAGAGCTCGTTCAAAGAGAAAGCAATCGGTGCCAGCACGGAACATTACAGAATCAGATCTAGAGCCCGAAGTTATTTCTCCCAAGGATAAGAAGACAAAACCGGAAGACATGTACTTTCAAAGTCCTGATTCAGGATATGAGAATCTCAAATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox

Protein Analysis

191

Amino Acids

22.0

Weight (kDa)

8.78

Isoelectric Point (pI)

61.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 86 - 146 7.4e-14 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 448
AccI GTMKAC 1 cut(s) 126
AccIII TCCGGA 1 cut(s) 108
AciI CCGC 1 cut(s) 262
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 1 cut(s) 551
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 3 cut(s) 290, 432, 539
AjnI CCWGG 2 cut(s) 243, 328
AluBI AGCT 3 cut(s) 43, 148, 425
AluI AGCT 3 cut(s) 43, 148, 425
Alw21I GWGCWC 1 cut(s) 427
AlwI GGATC 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 108
AoxI GGCC 2 cut(s) 165, 376
ApeKI GCWGC 3 cut(s) 145, 240, 259
BalI TGGCCA 1 cut(s) 378
BanI GGYRCC 1 cut(s) 448
BanII GRGCYC 2 cut(s) 427, 486
BbsI GAAGAC 3 cut(s) 53, 518, 531
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 3 cut(s) 157, 252, 271
BccI CCATC 3 cut(s) 56, 196, 220
BceAI ACGGC 2 cut(s) 107, 116
BciT130I CCWGG 2 cut(s) 245, 330
BfaI CTAG 1 cut(s) 479
BglII AGATCT 1 cut(s) 475
BisI GCNGC 3 cut(s) 146, 241, 260
BlsI GCNGC 3 cut(s) 147, 242, 261
Bme1390I CCNGG 2 cut(s) 245, 330
BmiI GGNNCC 2 cut(s) 410, 450
BmrFI CCNGG 2 cut(s) 245, 330
BmsI GCATC 1 cut(s) 239
BpiI GAAGAC 3 cut(s) 53, 518, 531
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 501
BsaWI WCCGGW 2 cut(s) 108, 520
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse3DI GCAATG 1 cut(s) 33
BseAI TCCGGA 1 cut(s) 108
BseBI CCWGG 2 cut(s) 245, 330
BseDI CCNNGG 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 65
BseXI GCAGC 3 cut(s) 157, 252, 271
BshFI GGCC 2 cut(s) 167, 378
BshNI GGYRCC 1 cut(s) 448
BsiHKAI GWGCWC 1 cut(s) 427
BsiSI CCGG 3 cut(s) 73, 109, 521
BslI CCNNNNNNNGG 1 cut(s) 551
BsnI GGCC 2 cut(s) 167, 378
Bsp1286I GDGCHC 2 cut(s) 427, 486
Bsp13I TCCGGA 1 cut(s) 108
Bsp143I GATC 3 cut(s) 117, 184, 475
BspACI CCGC 1 cut(s) 262
BspANI GGCC 2 cut(s) 167, 378
BspCNI CTCAG 1 cut(s) 64
BspEI TCCGGA 1 cut(s) 108
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 410, 450
BspPI GGATC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 415
BspT107I GGYRCC 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 3 cut(s) 117, 184, 475
BssNI GRCGYC 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 2 cut(s) 245, 330
Bst6I CTCTTC 2 cut(s) 10, 415
BstACI GRCGYC 1 cut(s) 269
BstAPI GCANNNNNTGC 1 cut(s) 448
BstC8I GCNNGC 1 cut(s) 453
BstDEI CTNAG 1 cut(s) 51
BstENI CCTNNNNNAGG 1 cut(s) 549
BstKTI GATC 3 cut(s) 120, 187, 478
BstMBI GATC 3 cut(s) 117, 184, 475
BstMWI GCNNNNNNNGC 4 cut(s) 128, 173, 268, 448
BstNI CCWGG 2 cut(s) 245, 330
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 243, 328
BstV1I GCAGC 3 cut(s) 157, 252, 271
BstV2I GAAGAC 3 cut(s) 53, 518, 531
BstX2I RGATCY 2 cut(s) 184, 475
BstYI RGATCY 2 cut(s) 184, 475
BsuRI GGCC 2 cut(s) 167, 378
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 453
CciI TCATGA 1 cut(s) 81
CseI GACGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 532
CviAII CATG 3 cut(s) 82, 374, 529
CviJI RGCY 8 cut(s) 43, 148, 167, 243, 317, 378, 425, 484
CviKI_1 RGCY 8 cut(s) 43, 148, 167, 243, 317, 378, 425, 484
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 1 cut(s) 51
DpnI GATC 3 cut(s) 119, 186, 477
DpnII GATC 3 cut(s) 117, 184, 475
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 2 cut(s) 10, 415
EarI CTCTTC 2 cut(s) 10, 415
Ecl136II GAGCTC 1 cut(s) 425
Eco130I CCWWGG 1 cut(s) 501
Eco147I AGGCCT 1 cut(s) 167
Eco24I GRGCYC 2 cut(s) 427, 486
Eco53kI GAGCTC 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 65
EcoICRI GAGCTC 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoRII CCWGG 2 cut(s) 243, 328
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 2 cut(s) 427, 486
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 3 cut(s) 85, 377, 532
FaiI YATR 8 cut(s) 83, 158, 216, 309, 359, 375, 530, 558
FatI CATG 3 cut(s) 81, 373, 528
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 146, 241, 260
FriOI GRGCYC 2 cut(s) 427, 486
Fsp4HI GCNGC 3 cut(s) 146, 241, 260
FspBI CTAG 1 cut(s) 479
GluI GCNGC 3 cut(s) 146, 241, 260
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 2 cut(s) 167, 378
HapII CCGG 3 cut(s) 73, 109, 521
HgaI GACGC 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 3 cut(s) 85, 377, 532
HinfI GANTC 4 cut(s) 49, 470, 548, 562
HpaII CCGG 3 cut(s) 73, 109, 521
Hpy166II GTNNAC 3 cut(s) 127, 267, 400
Hpy188I TCNGA 2 cut(s) 54, 475
Hpy188III TCNNGA 7 cut(s) 82, 109, 192, 412, 479, 545, 552
Hpy8I GTNNAC 3 cut(s) 127, 267, 400
HpyAV CCTTC 2 cut(s) 70, 178
HpyCH4V TGCA 3 cut(s) 160, 254, 283
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 173, 268, 448
HpyF3I CTNAG 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 3 cut(s) 85, 377, 532
Kpn2I TCCGGA 1 cut(s) 108
Kzo9I GATC 3 cut(s) 117, 184, 475
LguI GCTCTTC 1 cut(s) 415
Lsp1109I GCAGC 3 cut(s) 157, 252, 271
LweI GCATC 1 cut(s) 239
MaeI CTAG 1 cut(s) 479
MaeIII GTNAC 2 cut(s) 247, 382
MalI GATC 3 cut(s) 119, 186, 477
MboI GATC 3 cut(s) 117, 184, 475
MboII GAAGA 6 cut(s) 27, 58, 211, 432, 523, 536
MfeI CAATTG 1 cut(s) 403
MflI RGATCY 2 cut(s) 184, 475
MhlI GDGCHC 2 cut(s) 427, 486
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 1 cut(s) 403
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 1 cut(s) 43
Mox20I TGGCCA 1 cut(s) 378
MroI TCCGGA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 378
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 3 cut(s) 73, 109, 521
MspR9I CCNGG 2 cut(s) 245, 330
MunI CAATTG 1 cut(s) 403
MvaI CCWGG 2 cut(s) 245, 330
MwoI GCNNNNNNNGC 4 cut(s) 128, 173, 268, 448
NdeII GATC 3 cut(s) 117, 184, 475
NlaIII CATG 3 cut(s) 85, 377, 532
NlaIV GGNNCC 2 cut(s) 410, 450
NspI RCATGY 1 cut(s) 532
PagI TCATGA 1 cut(s) 81
PceI AGGCCT 1 cut(s) 167
PciI ACATGT 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 415
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 3 cut(s) 470, 548, 562
PflFI GACNNNGTC 1 cut(s) 95
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 3 cut(s) 147, 242, 261
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PscI ACATGT 1 cut(s) 528
Psp124BI GAGCTC 1 cut(s) 427
Psp6I CCWGG 2 cut(s) 243, 328
PspGI CCWGG 2 cut(s) 243, 328
PspN4I GGNNCC 2 cut(s) 410, 450
PsuI RGATCY 2 cut(s) 184, 475
PsyI GACNNNGTC 1 cut(s) 95
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
SacI GAGCTC 1 cut(s) 427
SapI GCTCTTC 1 cut(s) 415
SatI GCNGC 3 cut(s) 146, 241, 260
Sau3AI GATC 3 cut(s) 117, 184, 475
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 245, 330
SduI GDGCHC 2 cut(s) 427, 486
SetI ASST 5 cut(s) 45, 81, 150, 249, 427
SfaNI GCATC 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 1 cut(s) 403
SseBI AGGCCT 1 cut(s) 167
SsiI CCGC 1 cut(s) 262
SspMI CTAG 1 cut(s) 479
SstI GAGCTC 1 cut(s) 427
StuI AGGCCT 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 243, 328
StyI CCWWGG 1 cut(s) 501
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 403
TatI WGTACW 1 cut(s) 531
TfiI GAWTC 3 cut(s) 470, 548, 562
TscAI CASTG 1 cut(s) 178
TseI GCWGC 3 cut(s) 145, 240, 259
TspDTI ATGAA 3 cut(s) 44, 212, 327
TspGWI ACGGA 2 cut(s) 101, 472
TspRI CASTG 1 cut(s) 178
Tth111I GACNNNGTC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 549
XbaI TCTAGA 1 cut(s) 478
XceI RCATGY 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.