Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Reverse (-)

9334447 .. 9337006

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1114900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATGGAGTGGGAGAAGCAGCAAGAGATGGAGGGGAATGGGAGTGGAGGAGTGATGTATGTGAAGGTGATGACTGATGAGCAGTTGGAGACTCTGAGGAAACAGATTGCAGTTTATGCCACCATTTGTGAGCAGCTTGTTGAGATGCACAAGAACCTCACTGCGCAGCAAGATCTTGCAGGAGTCAGGATGGGGAATCTGTACTGCGATCAGTTGATGACATCCACTGGCCACAAAATTACTGCCAGGCAGCGGTGGACTCCAACAGCGTTGCAGCTCCAAATTCTTGAGCGTTTGTTCGAGCAAGGGAATGGAACTCCAAGCAAGCAGAAGATCAAGGAGATCACCTCTGAGCTGAGCCAGCACGGGCAAATTTCCGAAACAAATGTGTACAATTGGTTTCAGAACAGGCGCGCTCGATCAAAGAGGAAGCAACAAAATGCAGCATGTAACCATGCTGAATCAGAAGTGGAGACAGAGGTTGATTCACCTAAGGACAAAAAAACTAGACCGGAGGAAACGTTTCAGTCCCAGCAGAACTCAGCTCAAAGGACTGAAGATTTGTGCTTCCAGAGCCAGGAGATAAGTTCTGACCTGCATTTCTTGGATCCGCATACCACTAAGGCAGATAAGATGTTCCCGTCACACAGCGGTTTAAGGAGTTCTAGACATTTAAGCGAAATGGCCTTCTATGATGATGTGCTCTCAAGGCATGACCTGATGACCGGAAAGATGGAAGCCGGAAATTATAATCTTTTTCAGGAGGCAGAAGACTATGGCATGACGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

264

Amino Acids

30.21

Weight (kDa)

5.64

Isoelectric Point (pI)

63.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	83 - 143	1.9e-16	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
Acc16I	TGCGCA	1 cut(s)	165
Acc36I	ACCTGC	1 cut(s)	603
AccII	CGCG	1 cut(s)	414
AciI	CCGC	3 cut(s)	253, 611, 651
AclI	AACGTT	1 cut(s)	521
AclWI	GGATC	2 cut(s)	602, 615
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	2 cut(s)	282, 372
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	2 cut(s)	203, 392
AfiI	CCNNNNNNNGG	2 cut(s)	252, 577
AjnI	CCWGG	2 cut(s)	245, 576
AluBI	AGCT	4 cut(s)	136, 277, 355, 545
AluI	AGCT	4 cut(s)	136, 277, 355, 545
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	2 cut(s)	83, 467
AlwI	GGATC	2 cut(s)	602, 615
AoxI	GGCC	2 cut(s)	229, 684
ApeKI	GCWGC	6 cut(s)	19, 133, 166, 250, 274, 443
ApoI	RAATTY	2 cut(s)	282, 372
ArsI	GACNNNNNNTTYG	2 cut(s)	544, 576
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	3 cut(s)	166, 414, 416
AsuHPI	GGTGA	3 cut(s)	79, 337, 480
AxyI	CCTNAGG	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	231
BamHI	GGATCC	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	777
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	6 cut(s)	31, 145, 178, 262, 286, 455
BccI	CCATC	3 cut(s)	22, 184, 727
BciT130I	CCWGG	2 cut(s)	247, 578
BcoDI	GTCTC	2 cut(s)	83, 467
BfaI	CTAG	2 cut(s)	507, 666
BfuAI	ACCTGC	1 cut(s)	603
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	6 cut(s)	20, 134, 167, 251, 275, 444
BlpI	GCTNAGC	1 cut(s)	356
BlsI	GCNGC	6 cut(s)	21, 135, 168, 252, 276, 445
Bme1390I	CCNGG	2 cut(s)	247, 578
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	2 cut(s)	247, 578
BmsI	GCATC	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	777
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
Bpu1102I	GCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	2 cut(s)	308, 691
BsaWI	WCCGGW	2 cut(s)	511, 725
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 577
Bse1I	ACTGG	1 cut(s)	232
Bse21I	CCTNAGG	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	247, 578
BseGI	GGATG	2 cut(s)	195, 221
BseLI	CCNNNNNNNGG	2 cut(s)	252, 577
BseMII	CTCAG	4 cut(s)	86, 342, 347, 555
BseNI	ACTGG	1 cut(s)	232
BsePI	GCGCGC	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	6 cut(s)	31, 145, 178, 262, 286, 455
BseYI	CCCAGC	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	2 cut(s)	231, 686
BsiHKAI	GWGCWC	1 cut(s)	705
BsiSI	CCGG	3 cut(s)	512, 726, 741
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	2 cut(s)	252, 577
BsmAI	GTCTC	2 cut(s)	83, 467
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	2 cut(s)	231, 686
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	6 cut(s)	172, 208, 333, 342, 419, 607
Bsp1720I	GCTNAGC	1 cut(s)	356
BspACI	CCGC	3 cut(s)	253, 611, 651
BspANI	GGCC	2 cut(s)	231, 686
BspCNI	CTCAG	4 cut(s)	87, 343, 348, 554
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	609
BspMI	ACCTGC	1 cut(s)	603
BspPI	GGATC	2 cut(s)	602, 615
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	232
BssHII	GCGCGC	1 cut(s)	412
BssMI	GATC	6 cut(s)	172, 208, 333, 342, 419, 607
Bst2UI	CCWGG	2 cut(s)	247, 578
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	390
BstC8I	GCNNGC	3 cut(s)	326, 362, 414
BstDEI	CTNAG	6 cut(s)	95, 351, 356, 492, 541, 621
BstF5I	GGATG	2 cut(s)	195, 221
BstFNI	CGCG	1 cut(s)	414
BstHHI	GCGC	3 cut(s)	166, 414, 416
BstKTI	GATC	6 cut(s)	175, 211, 336, 345, 422, 610
BstMAI	GTCTC	2 cut(s)	83, 467
BstMBI	GATC	6 cut(s)	172, 208, 333, 342, 419, 607
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 361, 573, 709
BstNI	CCWGG	2 cut(s)	247, 578
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	245, 576
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	6 cut(s)	31, 145, 178, 262, 286, 455
BstV2I	GAAGAC	1 cut(s)	777
BstX2I	RGATCY	2 cut(s)	172, 607
BstYI	RGATCY	2 cut(s)	172, 607
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	231, 686
BtsCI	GGATG	2 cut(s)	195, 221
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	159, 225
BveI	ACCTGC	1 cut(s)	603
Cac8I	GCNNGC	3 cut(s)	326, 362, 414
CfoI	GCGC	3 cut(s)	166, 414, 416
Csp6I	GTAC	2 cut(s)	202, 391
CviAII	CATG	4 cut(s)	447, 455, 713, 781
CviJI	RGCY	9 cut(s)	136, 231, 277, 355, 360, 545, 576, 686, 740
CviKI_1	RGCY	9 cut(s)	136, 231, 277, 355, 360, 545, 576, 686, 740
CviQI	GTAC	2 cut(s)	202, 391
DdeI	CTNAG	6 cut(s)	95, 351, 356, 492, 541, 621
DpnI	GATC	6 cut(s)	174, 210, 335, 344, 421, 609
DpnII	GATC	6 cut(s)	172, 208, 333, 342, 419, 607
EaeI	YGGCCR	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	576
Eco81I	CCTNAGG	1 cut(s)	492
EcoRII	CCWGG	2 cut(s)	245, 576
FaeI	CATG	4 cut(s)	450, 458, 716, 784
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	4 cut(s)	446, 454, 712, 780
Fnu4HI	GCNGC	6 cut(s)	20, 134, 167, 251, 275, 444
FokI	GGATG	2 cut(s)	202, 208
Fsp4HI	GCNGC	6 cut(s)	20, 134, 167, 251, 275, 444
FspBI	CTAG	2 cut(s)	507, 666
FspI	TGCGCA	1 cut(s)	165
GlaI	GCGC	3 cut(s)	165, 413, 415
GluI	GCNGC	6 cut(s)	20, 134, 167, 251, 275, 444
GsaI	CCCAGC	1 cut(s)	535
HaeIII	GGCC	2 cut(s)	231, 686
HapII	CCGG	3 cut(s)	512, 726, 741
HhaI	GCGC	3 cut(s)	166, 414, 416
Hin1II	CATG	4 cut(s)	450, 458, 716, 784
Hin6I	GCGC	3 cut(s)	164, 412, 414
HinP1I	GCGC	3 cut(s)	164, 412, 414
HinfI	GANTC	6 cut(s)	91, 183, 196, 259, 461, 485
HpaII	CCGG	3 cut(s)	512, 726, 741
HphI	GGTGA	3 cut(s)	79, 337, 480
Hpy166II	GTNNAC	2 cut(s)	258, 391
Hpy188I	TCNGA	6 cut(s)	96, 352, 379, 405, 466, 592
Hpy188III	TCNNGA	5 cut(s)	187, 287, 571, 666, 761
Hpy8I	GTNNAC	2 cut(s)	258, 391
HpyAV	CCTTC	2 cut(s)	58, 697
HpyCH4IV	ACGT	1 cut(s)	521
HpyCH4V	TGCA	6 cut(s)	110, 148, 179, 274, 443, 598
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 361, 573, 709
HpyF3I	CTNAG	6 cut(s)	95, 351, 356, 492, 541, 621
HpySE526I	ACGT	1 cut(s)	521
Hsp92II	CATG	4 cut(s)	450, 458, 716, 784
HspAI	GCGC	3 cut(s)	164, 412, 414
Kzo9I	GATC	6 cut(s)	172, 208, 333, 342, 419, 607
LmnI	GCTCC	1 cut(s)	282
Lsp1109I	GCAGC	6 cut(s)	31, 145, 178, 262, 286, 455
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	2 cut(s)	507, 666
MaeII	ACGT	1 cut(s)	521
MaeIII	GTNAC	2 cut(s)	449, 642
MalI	GATC	6 cut(s)	174, 210, 335, 344, 421, 609
MboI	GATC	6 cut(s)	172, 208, 333, 342, 419, 607
MboII	GAAGA	3 cut(s)	343, 569, 782
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	2 cut(s)	172, 607
MhlI	GDGCHC	1 cut(s)	705
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	5 cut(s)	237, 282, 372, 394, 745
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	3 cut(s)	85, 192, 253
MmeI	TCCRAC	2 cut(s)	66, 287
MnlI	CCTC	9 cut(s)	25, 41, 90, 167, 358, 420, 472, 508, 757
Mox20I	TGGCCA	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	2 cut(s)	656, 674
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	2 cut(s)	253, 651
MspI	CCGG	3 cut(s)	512, 726, 741
MspR9I	CCNGG	2 cut(s)	247, 578
MunI	CAATTG	1 cut(s)	394
MvaI	CCWGG	2 cut(s)	247, 578
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	4 cut(s)	116, 361, 573, 709
NdeII	GATC	6 cut(s)	172, 208, 333, 342, 419, 607
NlaIII	CATG	4 cut(s)	450, 458, 716, 784
NlaIV	GGNNCC	1 cut(s)	609
NmuCI	GTSAC	1 cut(s)	642
NsbI	TGCGCA	1 cut(s)	165
NspI	RCATGY	1 cut(s)	450
PauI	GCGCGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	3 cut(s)	196, 461, 485
PkrI	GCNGC	6 cut(s)	21, 135, 168, 252, 276, 445
PleI	GAGTC	3 cut(s)	85, 191, 253
PpsI	GAGTC	3 cut(s)	85, 191, 253
PsiI	TTATAA	1 cut(s)	750
Psp1406I	AACGTT	1 cut(s)	521
Psp6I	CCWGG	2 cut(s)	245, 576
PspFI	CCCAGC	1 cut(s)	531
PspGI	CCWGG	2 cut(s)	245, 576
PspN4I	GGNNCC	1 cut(s)	609
PsuI	RGATCY	2 cut(s)	172, 607
PteI	GCGCGC	1 cut(s)	412
RsaI	GTAC	2 cut(s)	203, 392
RsaNI	GTAC	2 cut(s)	202, 391
SaqAI	TTAA	2 cut(s)	656, 674
SatI	GCNGC	6 cut(s)	20, 134, 167, 251, 275, 444
Sau3AI	GATC	6 cut(s)	172, 208, 333, 342, 419, 607
SchI	GAGTC	3 cut(s)	85, 192, 253
ScrFI	CCNGG	2 cut(s)	247, 578
SduI	GDGCHC	1 cut(s)	705
SfaNI	GCATC	1 cut(s)	135
SmlI	CTYRAG	2 cut(s)	287, 706
SmoI	CTYRAG	2 cut(s)	287, 706
Sse9I	AATT	5 cut(s)	237, 282, 372, 394, 745
SsiI	CCGC	3 cut(s)	253, 611, 651
SspMI	CTAG	2 cut(s)	507, 666
StyD4I	CCNGG	2 cut(s)	245, 576
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	2 cut(s)	300, 418
TasI	AATT	5 cut(s)	237, 282, 372, 394, 745
TatI	WGTACW	2 cut(s)	201, 390
TfiI	GAWTC	3 cut(s)	196, 461, 485
Tru1I	TTAA	2 cut(s)	656, 674
Tru9I	TTAA	2 cut(s)	656, 674
TscAI	CASTG	2 cut(s)	166, 232
TseFI	GTSAC	1 cut(s)	642
TseI	GCWGC	6 cut(s)	19, 133, 166, 250, 274, 443
Tsp45I	GTSAC	1 cut(s)	642
TspRI	CASTG	2 cut(s)	166, 232
XapI	RAATTY	2 cut(s)	282, 372
XbaI	TCTAGA	1 cut(s)	665
XceI	RCATGY	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	2 cut(s)	507, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.