Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Reverse (-)

9939103 .. 9941381

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG111500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGATGGAGTGGGATAAGCAGCACCAGCAAAAAGAGCAAGAGATTGAAGGGAATGGGAATGGGAATGGAGGAGTGGGGTTTGTGAAGGTTATGACTGATGAGCAATTGGAGACTCTCAGAAAGCAAATTGCTGTTTATGCTACCATTTGCGAGCAACTTGTGGAGATGCATAAGAACCTCACTGCCCAGCAAGATCTTGCAGGAGTCAGGATGGGTAATCTGTACTGTGATCCACTGATGACATCTGTTGGCCACAAAATCACCGCCAGACAGCGGTGGACTCCAACACCGGTGCAGCTACAGATTCTGGAGCAATTGTTCGATCAAGGGAATGGAACTCCAAGCAAACAAAAGATCAAGGAGATAACCTCTGAACTGAGCCAGCACGGTCAAATTTCTGAAACCAATGTTTACAATTGGTTCCAGAATAGGCGTGCTCGATCAAAGAGGAAGCAACAGAATGCAACATCCAACAATGCTGAATCAGAAGTGGAGACTGAAGTTGACTCTCCCAAGGACAAGAAAAAAGGACCTCAGGATCAACTGTTACAGTCCCAACAGAACACATCAGCTCAAAGGGCTGAAGACTTGTGCTTTCAGAACCCTGAGATGAGTTCTGACCTGCATTTCTTGGATCCACAGGGCATTAAAGAAGACAAAATGTTTGCATCCAGCAGCGATTTAAGGCCTTCCAGAGGTTTAGGCCATATGTCATTCTATGATGAAGTGCTCTCAAGCTCAAGAGGAAATGAGCTGATGACAGGAAAGATGGAAGTGGGAGGGAGCTATAATCTTTTCCAGCAGGCAGAAGACTACAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

274

Amino Acids

31.06

Weight (kDa)

5.37

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	90 - 150	1.5e-16	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	630
AciI	CCGC	2 cut(s)	264, 274
AclWI	GGATC	4 cut(s)	224, 546, 629, 642
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	2 cut(s)	519, 603
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	273, 695
AgeI	ACCGGT	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	47
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
AluBI	AGCT	5 cut(s)	298, 572, 738, 754, 786
AluI	AGCT	5 cut(s)	298, 572, 738, 754, 786
Alw21I	GWGCWC	2 cut(s)	439, 732
Alw26I	GTCTC	2 cut(s)	104, 488
AlwI	GGATC	4 cut(s)	224, 546, 629, 642
AlwNI	CAGNNNCTG	1 cut(s)	307
AoxI	GGCC	3 cut(s)	250, 686, 703
ApeKI	GCWGC	3 cut(s)	19, 295, 675
ApoI	RAATTY	1 cut(s)	393
ArsI	GACNNNNNNTTYG	2 cut(s)	647, 679
AsiGI	ACCGGT	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	530
AxyI	CCTNAGG	1 cut(s)	534
BalI	TGGCCA	1 cut(s)	252
BamHI	GGATCC	1 cut(s)	634
BbsI	GAAGAC	3 cut(s)	591, 660, 816
Bbv12I	GWGCWC	2 cut(s)	439, 732
BbvI	GCAGC	3 cut(s)	31, 307, 687
BccI	CCATC	2 cut(s)	205, 763
BcoDI	GTCTC	2 cut(s)	104, 488
BfmI	CTRYAG	2 cut(s)	299, 814
BfuAI	ACCTGC	1 cut(s)	630
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	3 cut(s)	20, 296, 676
BlsI	GCNGC	3 cut(s)	21, 297, 677
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	2 cut(s)	422, 636
BmsI	GCATC	2 cut(s)	156, 677
BpiI	GAAGAC	3 cut(s)	591, 660, 816
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpmI	CTGGAG	1 cut(s)	329
BpuEI	CTTGAG	2 cut(s)	718, 724
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 695
Bse118I	RCCGGY	1 cut(s)	289
Bse21I	CCTNAGG	1 cut(s)	534
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	3 cut(s)	216, 467, 668
BseLI	CCNNNNNNNGG	2 cut(s)	273, 695
BseMII	CTCAG	4 cut(s)	130, 368, 548, 597
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	3 cut(s)	31, 307, 687
BseYI	CCCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	3 cut(s)	252, 688, 705
BshTI	ACCGGT	1 cut(s)	289
BsiHKAI	GWGCWC	2 cut(s)	439, 732
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	2 cut(s)	273, 695
BsmAI	GTCTC	2 cut(s)	104, 488
BsmFI	GGGAC	1 cut(s)	538
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	3 cut(s)	252, 688, 705
Bsp1286I	GDGCHC	2 cut(s)	439, 732
Bsp143I	GATC	7 cut(s)	193, 229, 322, 354, 440, 538, 634
BspACI	CCGC	2 cut(s)	264, 274
BspANI	GGCC	3 cut(s)	252, 688, 705
BspCNI	CTCAG	4 cut(s)	129, 369, 547, 598
BspLI	GGNNCC	2 cut(s)	422, 636
BspMI	ACCTGC	1 cut(s)	630
BspPI	GGATC	4 cut(s)	224, 546, 629, 642
BsrFI	RCCGGY	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	7 cut(s)	193, 229, 322, 354, 440, 538, 634
BssT1I	CCWWGG	1 cut(s)	513
Bst4CI	ACNGT	4 cut(s)	227, 389, 546, 552
BstC8I	GCNNGC	4 cut(s)	152, 383, 435, 804
BstDEI	CTNAG	4 cut(s)	116, 377, 534, 606
BstENI	CCTNNNNNAGG	1 cut(s)	693
BstF5I	GGATG	3 cut(s)	216, 467, 668
BstKTI	GATC	7 cut(s)	196, 232, 325, 357, 443, 541, 637
BstMAI	GTCTC	2 cut(s)	104, 488
BstMBI	GATC	7 cut(s)	193, 229, 322, 354, 440, 538, 634
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 34, 137, 578
BstNSI	RCATGY	1 cut(s)	823
BstSFI	CTRYAG	2 cut(s)	299, 814
BstV1I	GCAGC	3 cut(s)	31, 307, 687
BstV2I	GAAGAC	3 cut(s)	591, 660, 816
BstX2I	RGATCY	2 cut(s)	193, 634
BstYI	RGATCY	2 cut(s)	193, 634
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	3 cut(s)	252, 688, 705
BtsCI	GGATG	3 cut(s)	216, 467, 668
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	180, 233
BveI	ACCTGC	1 cut(s)	630
Cac8I	GCNNGC	4 cut(s)	152, 383, 435, 804
CaiI	CAGNNNCTG	1 cut(s)	307
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	223
CspAI	ACCGGT	1 cut(s)	289
CviAII	CATG	1 cut(s)	820
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	4 cut(s)	116, 377, 534, 606
DpnI	GATC	7 cut(s)	195, 231, 324, 356, 442, 540, 636
DpnII	GATC	7 cut(s)	193, 229, 322, 354, 440, 538, 634
EaeI	YGGCCR	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	513
Eco147I	AGGCCT	1 cut(s)	688
Eco47I	GGWCC	1 cut(s)	530
Eco57I	CTGAAG	2 cut(s)	519, 603
Eco81I	CCTNAGG	1 cut(s)	534
EcoNI	CCTNNNNNAGG	1 cut(s)	693
EcoO109I	RGGNCCY	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	513
EcoT22I	ATGCAT	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	1 cut(s)	823
FaiI	YATR	8 cut(s)	92, 138, 171, 708, 710, 720, 789, 821
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	1 cut(s)	819
FauNDI	CATATG	1 cut(s)	708
Fnu4HI	GCNGC	3 cut(s)	20, 296, 676
FokI	GGATG	3 cut(s)	223, 454, 655
Fsp4HI	GCNGC	3 cut(s)	20, 296, 676
GluI	GCNGC	3 cut(s)	20, 296, 676
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	252, 688, 705
HapII	CCGG	1 cut(s)	290
Hin1II	CATG	1 cut(s)	823
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	6 cut(s)	112, 204, 280, 304, 482, 506
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	3 cut(s)	279, 412, 505
Hpy188I	TCNGA	6 cut(s)	119, 373, 400, 487, 600, 619
Hpy188III	TCNNGA	6 cut(s)	208, 308, 424, 536, 693, 741
Hpy8I	GTNNAC	3 cut(s)	279, 412, 505
HpyAV	CCTTC	3 cut(s)	41, 79, 699
HpyCH4III	ACNGT	4 cut(s)	227, 389, 546, 552
HpyCH4V	TGCA	6 cut(s)	169, 200, 295, 464, 625, 668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 34, 137, 578
HpyF3I	CTNAG	4 cut(s)	116, 377, 534, 606
Hsp92II	CATG	1 cut(s)	823
Kzo9I	GATC	7 cut(s)	193, 229, 322, 354, 440, 538, 634
LmnI	GCTCC	2 cut(s)	310, 783
Lsp1109I	GCAGC	3 cut(s)	31, 307, 687
LweI	GCATC	2 cut(s)	156, 677
MaeIII	GTNAC	1 cut(s)	546
MalI	GATC	7 cut(s)	195, 231, 324, 356, 442, 540, 636
MboI	GATC	7 cut(s)	193, 229, 322, 354, 440, 538, 634
MboII	GAAGA	3 cut(s)	596, 665, 821
MfeI	CAATTG	3 cut(s)	104, 314, 415
MflI	RGATCY	2 cut(s)	193, 634
MhlI	GDGCHC	2 cut(s)	439, 732
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	5 cut(s)	104, 126, 314, 393, 415
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	4 cut(s)	106, 213, 274, 500
MmeI	TCCRAC	2 cut(s)	308, 495
MnlI	CCTC	8 cut(s)	62, 188, 379, 441, 543, 689, 737, 773
Mox20I	TGGCCA	1 cut(s)	252
Mph1103I	ATGCAT	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	2 cut(s)	648, 683
Msp20I	TGGCCA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	274
MspI	CCGG	1 cut(s)	290
MunI	CAATTG	3 cut(s)	104, 314, 415
Mva1269I	GAATGC	1 cut(s)	466
MwoI	GCNNNNNNNGC	4 cut(s)	25, 34, 137, 578
NdeI	CATATG	1 cut(s)	708
NdeII	GATC	7 cut(s)	193, 229, 322, 354, 440, 538, 634
NlaIII	CATG	1 cut(s)	823
NlaIV	GGNNCC	2 cut(s)	422, 636
NsiI	ATGCAT	1 cut(s)	171
NspI	RCATGY	1 cut(s)	823
PceI	AGGCCT	1 cut(s)	688
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	2 cut(s)	304, 482
PinAI	ACCGGT	1 cut(s)	289
PkrI	GCNGC	3 cut(s)	21, 297, 677
PleI	GAGTC	4 cut(s)	106, 212, 274, 500
PpsI	GAGTC	4 cut(s)	106, 212, 274, 500
PpuMI	RGGWCCY	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	530
PspFI	CCCAGC	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	422, 636
PspPI	GGNCC	1 cut(s)	530
PspPPI	RGGWCCY	1 cut(s)	530
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	2 cut(s)	193, 634
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	648, 683
SatI	GCNGC	3 cut(s)	20, 296, 676
Sau3AI	GATC	7 cut(s)	193, 229, 322, 354, 440, 538, 634
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	4 cut(s)	106, 213, 274, 500
SduI	GDGCHC	2 cut(s)	439, 732
SfaNI	GCATC	2 cut(s)	156, 677
SfcI	CTRYAG	2 cut(s)	299, 814
SgrAI	CRCCGGYG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	733, 739
SmoI	CTYRAG	2 cut(s)	733, 739
Sse9I	AATT	5 cut(s)	104, 126, 314, 393, 415
SseBI	AGGCCT	1 cut(s)	688
SsiI	CCGC	2 cut(s)	264, 274
StuI	AGGCCT	1 cut(s)	688
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	4 cut(s)	227, 389, 546, 552
TaqI	TCGA	2 cut(s)	321, 439
TasI	AATT	5 cut(s)	104, 126, 314, 393, 415
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	304, 482
Tru1I	TTAA	2 cut(s)	648, 683
Tru9I	TTAA	2 cut(s)	648, 683
TscAI	CASTG	2 cut(s)	187, 240
TseI	GCWGC	3 cut(s)	19, 295, 675
TspDTI	ATGAA	1 cut(s)	738
TspRI	CASTG	2 cut(s)	187, 240
VpaK11BI	GGWCC	1 cut(s)	530
XagI	CCTNNNNNAGG	1 cut(s)	693
XapI	RAATTY	1 cut(s)	393
XceI	RCATGY	1 cut(s)	823
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.