Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Reverse (-)

990843 .. 994898

Gene Structure 4056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G009600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGATGGAGTGGCAGCAGCAGCAGCAGCAGCAGATTCAGAATCAACAGCAAATAATCCACCATTTGCAAAACCCAGAAGATGGGATTGGAAATGGGAATGGAGGGTTGTACGTGAAGGTGATGACGGACGAGCAAATGGAGCTGCTGAGGCGACAGATCGCTGTCTACGCCACCATTTGTGAGCAGCTTGTTGAGATGCACAAGGCCGTCACTGCTCAACAGGATCTTACTGGAATGAGACTAGGGAATTTTTATTGTGATCCATTCATGGCATCTGGTGGCCACAAGATAACTGCAAGGCAGCGCTGGACCCCAACACCTGTGCAACTTCAAATGCTTGAGCGGATTTTCGAGGAAGGCACTGGAACTCCATGCAAGCAGAAGATCAAAGAGATAACCATGGAACTCACACAACATGGCCAGATATCTGAAACAAATGTCTACAACTGGTTCCAGAACAGAAGAGCTCGTTCAAAAAGAAAGCAATCTGTGCCAGCACAAAACAATGGAGAATCAGAAGCAGAGCCAGAAGTTGAATCTCCCAGGGATGAAAAGACAAAACCAGAGGACATCATGTCCCTTGACAACTCTGCACCGAGGGCGGAAAATATGTACCTTCAAAGTCCCGAGTTAGGATTTGGAAATTTTGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

219

Amino Acids

25.16

Weight (kDa)

5.32

Isoelectric Point (pI)

63.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	343
AccI	GTMKAC	2 cut(s)	165, 441
AciI	CCGC	2 cut(s)	343, 602
AclWI	GGATC	2 cut(s)	231, 254
AcoI	YGGCCR	2 cut(s)	280, 418
AcsI	RAATTY	2 cut(s)	247, 643
AfaI	GTAC	2 cut(s)	110, 614
AfeI	AGCGCT	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	80, 632
AgsI	TTSAA	4 cut(s)	332, 474, 536, 620
AhdI	GACNNNNNGTC	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	3 cut(s)	69, 101, 634
AluBI	AGCT	3 cut(s)	142, 187, 467
AluI	AGCT	3 cut(s)	142, 187, 467
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	2 cut(s)	231, 254
Ama87I	CYCGRG	1 cut(s)	626
Aor51HI	AGCGCT	1 cut(s)	305
AoxI	GGCC	3 cut(s)	204, 280, 418
ApeKI	GCWGC	9 cut(s)	13, 16, 19, 22, 25, 28, 142, 184, 301
ApoI	RAATTY	2 cut(s)	247, 643
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	309
BalI	TGGCCA	2 cut(s)	282, 420
BanII	GRGCYC	1 cut(s)	469
Bbv12I	GWGCWC	1 cut(s)	469
BbvCI	CCTCAGC	1 cut(s)	146
BbvI	GCAGC	9 cut(s)	25, 28, 31, 34, 37, 40, 129, 196, 313
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	242
BfoI	RGCGCY	1 cut(s)	307
BisI	GCNGC	9 cut(s)	14, 17, 20, 23, 26, 29, 143, 185, 302
BlsI	GCNGC	9 cut(s)	15, 18, 21, 24, 27, 30, 144, 186, 303
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	309
BmeRI	GACNNNNNGTC	1 cut(s)	574
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	311, 452
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	2 cut(s)	186, 281
Bpu10I	CCTNAGC	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	359
BsaAI	YACGTR	1 cut(s)	112
BsaJI	CCNNGG	4 cut(s)	399, 542, 543, 596
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 632
Bse1I	ACTGG	3 cut(s)	235, 367, 452
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	4 cut(s)	399, 542, 543, 596
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	2 cut(s)	80, 632
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	3 cut(s)	235, 367, 452
BseXI	GCAGC	9 cut(s)	25, 28, 31, 34, 37, 40, 129, 196, 313
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	3 cut(s)	206, 282, 420
BsiHKAI	GWGCWC	1 cut(s)	469
BsiHKCI	CYCGRG	1 cut(s)	626
BslFI	GGGAC	2 cut(s)	562, 609
BslI	CCNNNNNNNGG	2 cut(s)	80, 632
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	2 cut(s)	562, 609
BsnI	GGCC	3 cut(s)	206, 282, 420
BsoBI	CYCGRG	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	156, 223, 259, 384
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	2 cut(s)	343, 602
BspANI	GGCC	3 cut(s)	206, 282, 420
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	311, 452
BspPI	GGATC	2 cut(s)	231, 254
BspQI	GCTCTTC	1 cut(s)	457
BsrBI	CCGCTC	1 cut(s)	343
BsrI	ACTGG	3 cut(s)	235, 367, 452
BssECI	CCNNGG	4 cut(s)	399, 542, 543, 596
BssMI	GATC	4 cut(s)	156, 223, 259, 384
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	457
BstAPI	GCANNNNNTGC	1 cut(s)	490
BstBAI	YACGTR	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	377, 495
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	553
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	4 cut(s)	159, 226, 262, 387
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	4 cut(s)	156, 223, 259, 384
BstNI	CCWGG	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	542
BstV1I	GCAGC	9 cut(s)	25, 28, 31, 34, 37, 40, 129, 196, 313
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	206, 282, 420
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	210, 360
Cac8I	GCNNGC	2 cut(s)	377, 495
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	109, 613
CviAII	CATG	5 cut(s)	268, 372, 400, 416, 574
CviJI	RGCY	7 cut(s)	142, 187, 206, 282, 420, 467, 526
CviKI_1	RGCY	7 cut(s)	142, 187, 206, 282, 420, 467, 526
CviQI	GTAC	2 cut(s)	109, 613
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	4 cut(s)	158, 225, 261, 386
DpnII	GATC	4 cut(s)	156, 223, 259, 384
DriI	GACNNNNNGTC	1 cut(s)	574
EaeI	YGGCCR	2 cut(s)	280, 418
Eam1104I	CTCTTC	1 cut(s)	457
Eam1105I	GACNNNNNGTC	1 cut(s)	574
EarI	CTCTTC	1 cut(s)	457
EciI	GGCGGA	1 cut(s)	617
Ecl136II	GAGCTC	1 cut(s)	467
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	469
Eco32I	GATATC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	309
Eco47III	AGCGCT	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	542
EcoRV	GATATC	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	5 cut(s)	271, 375, 403, 419, 577
FaiI	YATR	6 cut(s)	269, 373, 401, 417, 575, 611
FaqI	GGGAC	2 cut(s)	562, 609
FatI	CATG	5 cut(s)	267, 371, 399, 415, 573
FblI	GTMKAC	2 cut(s)	165, 441
Fnu4HI	GCNGC	9 cut(s)	14, 17, 20, 23, 26, 29, 143, 185, 302
FokI	GGATG	1 cut(s)	560
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	9 cut(s)	14, 17, 20, 23, 26, 29, 143, 185, 302
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	9 cut(s)	14, 17, 20, 23, 26, 29, 143, 185, 302
HaeII	RGCGCY	1 cut(s)	307
HaeIII	GGCC	3 cut(s)	206, 282, 420
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	5 cut(s)	271, 375, 403, 419, 577
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HinfI	GANTC	4 cut(s)	34, 40, 512, 536
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	166, 442
Hpy188I	TCNGA	3 cut(s)	39, 430, 517
Hpy188III	TCNNGA	2 cut(s)	454, 626
Hpy8I	GTNNAC	2 cut(s)	166, 442
HpyAV	CCTTC	3 cut(s)	109, 350, 626
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	6 cut(s)	67, 199, 296, 325, 375, 593
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	5 cut(s)	271, 375, 403, 419, 577
HspAI	GCGC	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	156, 223, 259, 384
LguI	GCTCTTC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	9 cut(s)	25, 28, 31, 34, 37, 40, 129, 196, 313
LweI	GCATC	2 cut(s)	186, 281
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	4 cut(s)	158, 225, 261, 386
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	4 cut(s)	156, 223, 259, 384
MboII	GAAGA	3 cut(s)	89, 394, 474
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	469
MlsI	TGGCCA	2 cut(s)	282, 420
MluCI	AATT	2 cut(s)	247, 643
MluNI	TGGCCA	2 cut(s)	282, 420
MnlI	CCTC	5 cut(s)	95, 141, 346, 559, 591
Mox20I	TGGCCA	2 cut(s)	282, 420
MscI	TGGCCA	2 cut(s)	282, 420
Msp20I	TGGCCA	2 cut(s)	282, 420
MspR9I	CCNGG	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	544
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	4 cut(s)	156, 223, 259, 384
NlaIII	CATG	5 cut(s)	271, 375, 403, 419, 577
NlaIV	GGNNCC	2 cut(s)	311, 452
NmuCI	GTSAC	1 cut(s)	208
PasI	CCCWGGG	1 cut(s)	543
PciSI	GCTCTTC	1 cut(s)	457
PfeI	GAWTC	4 cut(s)	34, 40, 512, 536
PflMI	CCANNNNNTGG	1 cut(s)	80
PkrI	GCNGC	9 cut(s)	15, 18, 21, 24, 27, 30, 144, 186, 303
Ppu21I	YACGTR	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	2 cut(s)	311, 452
PspPI	GGNCC	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	2 cut(s)	110, 614
RsaNI	GTAC	2 cut(s)	109, 613
SacI	GAGCTC	1 cut(s)	469
SapI	GCTCTTC	1 cut(s)	457
SatI	GCNGC	9 cut(s)	14, 17, 20, 23, 26, 29, 143, 185, 302
Sau3AI	GATC	4 cut(s)	156, 223, 259, 384
Sau96I	GGNCC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	469
SetI	ASST	7 cut(s)	114, 120, 144, 189, 322, 469, 618
SfaNI	GCATC	2 cut(s)	186, 281
SinI	GGWCC	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	247, 643
SsiI	CCGC	2 cut(s)	343, 602
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	399
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	351
TasI	AATT	2 cut(s)	247, 643
TfiI	GAWTC	4 cut(s)	34, 40, 512, 536
TscAI	CASTG	2 cut(s)	217, 367
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	9 cut(s)	13, 16, 19, 22, 25, 28, 142, 184, 301
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	256, 564
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	217, 367
Van91I	CCANNNNNTGG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	309
XapI	RAATTY	2 cut(s)	247, 643
XmiI	GTMKAC	2 cut(s)	165, 441
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.