Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Forward (+)

816122 .. 816992

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATGGGGGAGTGGCAGCAGCAGCAGCAGCAGCAAATGATCCACCAGAATTTGCAGAACCCAGAAGAAGATGATGGGATTGGAAATGGAAATGGAGGGTTGTTCGTGAAGGTGATGACGGACGAGCAAATGGAGCAGCTGAGGCAACAGATCGCCGTCTACACCACAATTTGTGACCAGCTTGTCGACTTGCACAAGCAACTCTCTGCCCAACAGGATCTTACTGGCTTTTGTAATGAATTTATTCACTTGCAAGTAATTGATTCATGGGGTGGGAGCACGAACACCGGTTCCTCGAGTTGGGGAAGCTTACCGCAAGCTTGGTGGATATATCCTCCTCCAACTTTTTCAGGAGTTCAGGTGGAAGGACCTTGTCAAATTCAGCACCCGGCGTGGCCCAGCCTTAGCCTCCGAAATAAAAGGAGGATAAGCGAAAGCACAAAAATGTGGATTAGTAAATTTAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

157

Amino Acids

17.86

Weight (kDa)

5.22

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccI	GTMKAC	2 cut(s)	159, 186
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	2 cut(s)	34, 225
AcsI	RAATTY	4 cut(s)	49, 239, 378, 458
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgeI	ACCGGT	1 cut(s)	287
AloI	GAACNNNNNNTCC	2 cut(s)	275, 307
AluBI	AGCT	4 cut(s)	139, 181, 309, 320
AluI	AGCT	4 cut(s)	139, 181, 309, 320
Alw21I	GWGCWC	1 cut(s)	281
AlwI	GGATC	2 cut(s)	34, 225
Ama87I	CYCGRG	1 cut(s)	295
AoxI	GGCC	1 cut(s)	395
ApeKI	GCWGC	7 cut(s)	16, 19, 22, 25, 28, 31, 136
ApoI	RAATTY	4 cut(s)	49, 239, 378, 458
AsiGI	ACCGGT	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	2 cut(s)	368, 396
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	281
BbvCI	CCTCAGC	1 cut(s)	140
BbvI	GCAGC	7 cut(s)	28, 31, 34, 37, 40, 43, 148
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	389
BfaI	CTAG	1 cut(s)	469
BisI	GCNGC	7 cut(s)	17, 20, 23, 26, 29, 32, 137
BlsI	GCNGC	7 cut(s)	18, 21, 24, 27, 30, 33, 138
BmcAI	AGTACT	1 cut(s)	467
Bme1390I	CCNGG	1 cut(s)	389
Bme18I	GGWCC	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	368, 396
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	389
Bpu10I	CCTNAGC	2 cut(s)	140, 404
BpuMI	CCSGG	1 cut(s)	389
BsaWI	WCCGGW	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	7 cut(s)	28, 31, 34, 37, 40, 43, 148
BseYI	CCCAGC	1 cut(s)	398
BshFI	GGCC	1 cut(s)	397
BshTI	ACCGGT	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	288, 389
BslI	CCNNNNNNNGG	1 cut(s)	300
BsnI	GGCC	1 cut(s)	397
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	39, 150, 217
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	34, 225
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	287
BssMI	GATC	3 cut(s)	39, 150, 217
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	140, 404
BstKTI	GATC	3 cut(s)	42, 153, 220
BstMBI	GATC	3 cut(s)	39, 150, 217
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 25, 28, 31, 133, 142
BstSCI	CCNGG	1 cut(s)	387
BstV1I	GCAGC	7 cut(s)	28, 31, 34, 37, 40, 43, 148
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	368, 396
Csp6I	GTAC	1 cut(s)	466
CspAI	ACCGGT	1 cut(s)	287
CspCI	CAANNNNNGTGG	2 cut(s)	305, 340
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	8 cut(s)	139, 181, 228, 309, 320, 397, 402, 408
CviKI_1	RGCY	8 cut(s)	139, 181, 228, 309, 320, 397, 402, 408
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	2 cut(s)	140, 404
DpnI	GATC	3 cut(s)	41, 152, 219
DpnII	GATC	3 cut(s)	39, 150, 217
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	368
FaeI	CATG	1 cut(s)	270
FaiI	YATR	2 cut(s)	268, 331
FatI	CATG	1 cut(s)	266
FblI	GTMKAC	2 cut(s)	159, 186
Fnu4HI	GCNGC	7 cut(s)	17, 20, 23, 26, 29, 32, 137
Fsp4HI	GCNGC	7 cut(s)	17, 20, 23, 26, 29, 32, 137
FspBI	CTAG	1 cut(s)	469
GluI	GCNGC	7 cut(s)	17, 20, 23, 26, 29, 32, 137
GsaI	CCCAGC	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	397
HapII	CCGG	2 cut(s)	288, 389
Hin1II	CATG	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	2 cut(s)	307, 318
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	2 cut(s)	288, 389
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	160, 187
Hpy188I	TCNGA	1 cut(s)	413
Hpy188III	TCNNGA	2 cut(s)	106, 351
Hpy8I	GTNNAC	2 cut(s)	160, 187
HpyAV	CCTTC	2 cut(s)	103, 359
HpyCH4V	TGCA	3 cut(s)	55, 193, 253
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 25, 28, 31, 133, 142
HpyF3I	CTNAG	2 cut(s)	140, 404
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	39, 150, 217
LmnI	GCTCC	2 cut(s)	133, 276
Lsp1109I	GCAGC	7 cut(s)	28, 31, 34, 37, 40, 43, 148
MaeI	CTAG	1 cut(s)	469
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	3 cut(s)	41, 152, 219
MboI	GATC	3 cut(s)	39, 150, 217
MboII	GAAGA	2 cut(s)	77, 80
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	6 cut(s)	49, 168, 239, 258, 378, 458
MmeI	TCCRAC	1 cut(s)	365
MnlI	CCTC	7 cut(s)	89, 135, 304, 345, 348, 417, 419
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	2 cut(s)	288, 389
MspR9I	CCNGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	6 cut(s)	22, 25, 28, 31, 133, 142
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	3 cut(s)	39, 150, 217
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	173
PaeR7I	CTCGAG	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	263
PflFI	GACNNNGTC	1 cut(s)	372
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	7 cut(s)	18, 21, 24, 27, 30, 33, 138
PpuMI	RGGWCCY	1 cut(s)	368
Psp5II	RGGWCCY	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	2 cut(s)	368, 396
PspPPI	RGGWCCY	1 cut(s)	368
PspXI	VCTCGAGB	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	217
PsyI	GACNNNGTC	1 cut(s)	372
PvuII	CAGCTG	1 cut(s)	139
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	443
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	7 cut(s)	17, 20, 23, 26, 29, 32, 137
Sau3AI	GATC	3 cut(s)	39, 150, 217
Sau96I	GGNCC	2 cut(s)	368, 396
ScaI	AGTACT	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	7 cut(s)	114, 141, 183, 311, 322, 363, 373
Sfr274I	CTCGAG	1 cut(s)	295
SinI	GGWCC	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	6 cut(s)	49, 168, 239, 258, 378, 458
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	387
TaqI	TCGA	2 cut(s)	186, 296
TasI	AATT	6 cut(s)	49, 168, 239, 258, 378, 458
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	7 cut(s)	16, 19, 22, 25, 28, 31, 136
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	252, 255
TspGWI	ACGGA	1 cut(s)	134
Tth111I	GACNNNGTC	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	4 cut(s)	49, 239, 378, 458
XhoI	CTCGAG	1 cut(s)	295
XmiI	GTMKAC	2 cut(s)	159, 186
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	469
ZrmI	AGTACT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.