Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Reverse (-)

9484272 .. 9487305

Gene Structure 3034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG114800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGTAATCTGTACTGTGATCCACTGATGACATCTGTTGGCCACAAAATCACTGCCAGACAGCGGTGGACTCCAACACCGGTGCAGCTACAGATTCTGGAGCAATTGTTCGATCAAGGGAATGGAACTCCAAGCAAACAAAAGATCAAGGAGATAACCTCTGAACTGAGCCAGCACGGTCAAATTTCTGAAACCAATGTTTACAATTGGTTCCAGAATAGGCGTGCTCGATCAAAGAGGAAGCAACAGAATGCAACATCCAACAATGCTGAATCAGAAGTGGAGACTGAAGTTGACTCTCCCAAGGACAAGAAAAAAGGACCTCAGGATCAACTGTTACAGTCCCAACAGAACACATCAGCTCAAAGGGCTGAAGACTTGTGCTTTCAGAACCCTGAGATGAGTTCTGACCTGCATTTCTTGGATCCACAGGGCATTAAAGAAGACAAAATGTTTGCATCCAGCAGCGATTTAAGGCCTTCGAGAGGTTTAGGCCATATGTCATTCTATGATGAAGTGCTCTCAAGCTCAAGAGGAAATGAGCTGATGACAGGAAAGATGGAAGTGGGAGGGAGCTATAATCTTTTCCAGCAGGCAGAAGACTACAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

204

Amino Acids

23.13

Weight (kDa)

5.62

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	20 - 80	8.5e-17	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	420
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	4 cut(s)	14, 336, 419, 432
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	2 cut(s)	309, 393
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	63, 485
AgeI	ACCGGT	1 cut(s)	79
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	5 cut(s)	88, 362, 528, 544, 576
AluI	AGCT	5 cut(s)	88, 362, 528, 544, 576
Alw21I	GWGCWC	2 cut(s)	229, 522
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	4 cut(s)	14, 336, 419, 432
AlwNI	CAGNNNCTG	1 cut(s)	97
AoxI	GGCC	3 cut(s)	40, 476, 493
ApeKI	GCWGC	2 cut(s)	85, 465
ApoI	RAATTY	1 cut(s)	183
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AsiGI	ACCGGT	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	320
AxyI	CCTNAGG	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	42
BamHI	GGATCC	1 cut(s)	424
BbsI	GAAGAC	3 cut(s)	381, 450, 606
Bbv12I	GWGCWC	2 cut(s)	229, 522
BbvI	GCAGC	2 cut(s)	97, 477
BccI	CCATC	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	278
BfmI	CTRYAG	2 cut(s)	89, 604
BfuAI	ACCTGC	1 cut(s)	420
BisI	GCNGC	2 cut(s)	86, 466
BlsI	GCNGC	2 cut(s)	87, 467
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	212, 426
BmsI	GCATC	1 cut(s)	467
BpiI	GAAGAC	3 cut(s)	381, 450, 606
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpmI	CTGGAG	1 cut(s)	119
BpuEI	CTTGAG	2 cut(s)	508, 514
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 485
Bse118I	RCCGGY	1 cut(s)	79
Bse21I	CCTNAGG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	2 cut(s)	257, 458
BseLI	CCNNNNNNNGG	2 cut(s)	63, 485
BseMII	CTCAG	3 cut(s)	158, 338, 387
BseXI	GCAGC	2 cut(s)	97, 477
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	3 cut(s)	42, 478, 495
BshTI	ACCGGT	1 cut(s)	79
BsiHKAI	GWGCWC	2 cut(s)	229, 522
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	63, 485
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	42, 478, 495
Bsp1286I	GDGCHC	2 cut(s)	229, 522
Bsp143I	GATC	6 cut(s)	19, 112, 144, 230, 328, 424
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	3 cut(s)	42, 478, 495
BspCNI	CTCAG	3 cut(s)	159, 337, 388
BspLI	GGNNCC	2 cut(s)	212, 426
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	4 cut(s)	14, 336, 419, 432
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	6 cut(s)	19, 112, 144, 230, 328, 424
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	4 cut(s)	17, 179, 336, 342
BstC8I	GCNNGC	3 cut(s)	173, 225, 594
BstDEI	CTNAG	3 cut(s)	167, 324, 396
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	257, 458
BstKTI	GATC	6 cut(s)	22, 115, 147, 233, 331, 427
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	6 cut(s)	19, 112, 144, 230, 328, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	613
BstSFI	CTRYAG	2 cut(s)	89, 604
BstV1I	GCAGC	2 cut(s)	97, 477
BstV2I	GAAGAC	3 cut(s)	381, 450, 606
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	42, 478, 495
BtsCI	GGATG	2 cut(s)	257, 458
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	23, 51
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	3 cut(s)	173, 225, 594
CaiI	CAGNNNCTG	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	13
CspAI	ACCGGT	1 cut(s)	79
CviAII	CATG	1 cut(s)	610
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	3 cut(s)	167, 324, 396
DpnI	GATC	6 cut(s)	21, 114, 146, 232, 330, 426
DpnII	GATC	6 cut(s)	19, 112, 144, 230, 328, 424
EaeI	YGGCCR	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	2 cut(s)	309, 393
Eco81I	CCTNAGG	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	1 cut(s)	613
FaiI	YATR	5 cut(s)	498, 500, 510, 579, 611
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	1 cut(s)	609
FauNDI	CATATG	1 cut(s)	498
Fnu4HI	GCNGC	2 cut(s)	86, 466
FokI	GGATG	2 cut(s)	244, 445
Fsp4HI	GCNGC	2 cut(s)	86, 466
GluI	GCNGC	2 cut(s)	86, 466
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	3 cut(s)	42, 478, 495
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	1 cut(s)	613
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	4 cut(s)	70, 94, 272, 296
HpaII	CCGG	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	69, 202, 295
Hpy188I	TCNGA	5 cut(s)	163, 190, 277, 390, 409
Hpy188III	TCNNGA	5 cut(s)	98, 214, 326, 483, 531
Hpy8I	GTNNAC	3 cut(s)	69, 202, 295
HpyAV	CCTTC	1 cut(s)	489
HpyCH4III	ACNGT	4 cut(s)	17, 179, 336, 342
HpyCH4V	TGCA	4 cut(s)	85, 254, 415, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	3 cut(s)	167, 324, 396
Hsp92II	CATG	1 cut(s)	613
Kzo9I	GATC	6 cut(s)	19, 112, 144, 230, 328, 424
LmnI	GCTCC	2 cut(s)	100, 573
Lsp1109I	GCAGC	2 cut(s)	97, 477
LweI	GCATC	1 cut(s)	467
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	6 cut(s)	21, 114, 146, 232, 330, 426
MboI	GATC	6 cut(s)	19, 112, 144, 230, 328, 424
MboII	GAAGA	3 cut(s)	386, 455, 611
MfeI	CAATTG	2 cut(s)	104, 205
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	229, 522
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	3 cut(s)	104, 183, 205
MluNI	TGGCCA	1 cut(s)	42
MlyI	GAGTC	2 cut(s)	64, 290
MmeI	TCCRAC	2 cut(s)	98, 285
MnlI	CCTC	6 cut(s)	169, 231, 333, 479, 527, 563
Mox20I	TGGCCA	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	42
MseI	TTAA	2 cut(s)	438, 473
Msp20I	TGGCCA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	1 cut(s)	80
MunI	CAATTG	2 cut(s)	104, 205
Mva1269I	GAATGC	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	6 cut(s)	19, 112, 144, 230, 328, 424
NlaIII	CATG	1 cut(s)	613
NlaIV	GGNNCC	2 cut(s)	212, 426
NspI	RCATGY	1 cut(s)	613
PceI	AGGCCT	1 cut(s)	478
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	94, 272
PinAI	ACCGGT	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	87, 467
PleI	GAGTC	2 cut(s)	64, 290
PpsI	GAGTC	2 cut(s)	64, 290
PpuMI	RGGWCCY	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	212, 426
PspPI	GGNCC	1 cut(s)	320
PspPPI	RGGWCCY	1 cut(s)	320
PstNI	CAGNNNCTG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	438, 473
SatI	GCNGC	2 cut(s)	86, 466
Sau3AI	GATC	6 cut(s)	19, 112, 144, 230, 328, 424
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	2 cut(s)	64, 290
SduI	GDGCHC	2 cut(s)	229, 522
SetI	ASST	9 cut(s)	90, 161, 325, 364, 414, 490, 530, 546, 578
SfaNI	GCATC	1 cut(s)	467
SfcI	CTRYAG	2 cut(s)	89, 604
SgrAI	CRCCGGYG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	2 cut(s)	523, 529
SmoI	CTYRAG	2 cut(s)	523, 529
Sse9I	AATT	3 cut(s)	104, 183, 205
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	1 cut(s)	64
StuI	AGGCCT	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	4 cut(s)	17, 179, 336, 342
TaqI	TCGA	3 cut(s)	111, 229, 482
TasI	AATT	3 cut(s)	104, 183, 205
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	94, 272
Tru1I	TTAA	2 cut(s)	438, 473
Tru9I	TTAA	2 cut(s)	438, 473
TscAI	CASTG	2 cut(s)	30, 58
TseI	GCWGC	2 cut(s)	85, 465
TspDTI	ATGAA	1 cut(s)	528
TspRI	CASTG	2 cut(s)	30, 58
VpaK11BI	GGWCC	1 cut(s)	320
XagI	CCTNNNNNAGG	1 cut(s)	483
XapI	RAATTY	1 cut(s)	183
XceI	RCATGY	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.