Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Forward (+)

33708941 .. 33711383

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG296500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGAGGGGCAGAGAAGAGTGTTGGCAATGAAAATGGAGAAGCTGAAGACTCAGAACCCAGATGGGTTTGGCAGGAAGGTCATGACGGACGACCAAGTCGAGCAACTCCGGAAACAGATCGCCGTCTACGCCGTCATCTGTGAGCAGCTTGTTGATATGCACAAGGCCTTCACTGCCCAACAGGATCTTTCTGGAGTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

67

Amino Acids

7.67

Weight (kDa)

6.55

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	108
AclWI	GGATC	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	65
AluBI	AGCT	2 cut(s)	43, 148
AluI	AGCT	2 cut(s)	43, 148
AlwI	GGATC	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	2 cut(s)	107, 116
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	33
BseAI	TCCGGA	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	167
Bsp13I	TCCGGA	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	117, 184
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	81
BspPI	GGATC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	33
BssMI	GATC	2 cut(s)	117, 184
Bst6I	CTCTTC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	51
BstKTI	GATC	2 cut(s)	120, 187
BstMBI	GATC	2 cut(s)	117, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 173
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
CciI	TCATGA	1 cut(s)	81
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	3 cut(s)	43, 148, 167
CviKI_1	RGCY	3 cut(s)	43, 148, 167
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	2 cut(s)	119, 186
DpnII	GATC	2 cut(s)	117, 184
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Eco147I	AGGCCT	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	65
FaeI	CATG	1 cut(s)	85
FaiI	YATR	2 cut(s)	83, 158
FatI	CATG	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	109
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	2 cut(s)	49, 195
HpaII	CCGG	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	3 cut(s)	82, 109, 192
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	70, 178
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 173
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	85
Kpn2I	TCCGGA	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	117, 184
LpnPI	CCDG	5 cut(s)	58, 72, 122, 167, 177
Lsp1109I	GCAGC	1 cut(s)	157
MalI	GATC	2 cut(s)	119, 186
MboI	GATC	2 cut(s)	117, 184
MboII	GAAGA	2 cut(s)	27, 58
MflI	RGATCY	1 cut(s)	184
MlyI	GAGTC	2 cut(s)	43, 204
MroI	TCCGGA	1 cut(s)	108
MseI	TTAA	1 cut(s)	202
MspI	CCGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	128, 173
NdeII	GATC	2 cut(s)	117, 184
NlaIII	CATG	1 cut(s)	85
PagI	TCATGA	1 cut(s)	81
PceI	AGGCCT	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	147
PleI	GAGTC	2 cut(s)	43, 203
PpsI	GAGTC	2 cut(s)	43, 203
PsuI	RGATCY	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	202
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	2 cut(s)	117, 184
SchI	GAGTC	2 cut(s)	43, 204
SetI	ASST	3 cut(s)	45, 81, 150
SgeI	CNNG	9 cut(s)	71, 85, 94, 107, 112, 121, 161, 175, 194
SseBI	AGGCCT	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	99, 198
Tru1I	TTAA	1 cut(s)	202
Tru9I	TTAA	1 cut(s)	202
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	44
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	178
Tth111I	GACNNNGTC	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.