Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002233

Physical Location & Seq

Genomic Coordinates Forward (+)

33323043 .. 33324660

Gene Structure 1618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG313300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAGGGGCAGAGAAGAGTGTTGGCAATGAAAATGGAGAAGCTGAAGACTCAGAACCCAGATGGGTTTTGCAGGAAGGTCATGACGGACGACCAAGTCGAGCAACTCCGGAAACAGATCGCCGTCTACGCCGTCATCTGTGAGCAGCTTGTTGATATGCACAAGGCCTTCACTGCCCAACAGGATCTTTCTGGAATGAAGATGGGAAGTGTGTATGGCGATTTGATGGCATCTGGTGGCAGCAAGAACAGAAGAGCTCGTTCAAAGAGAAAGCAATCGGTGCCAGCACGGAACATTACAGAATCAGATCTAGAGCCCGAAGTTATTTCTCCCAAGGATAAGAAGACAAAACCAGAAGACATGTACTTTCAAAGTCCTGATTCAGGATATGAGAATCTCAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

135

Amino Acids

15.44

Weight (kDa)

9.23

Isoelectric Point (pI)

70.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35550
fragaria_vesca	FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_1g10280 FvH4_5g03570 FvH4_5g25470 FvH4_5g25470
malus_domestica	MD00G1207300.v1.1 MD02G1114900.v1.1 MD15G1230800.v1.1
prunus_persica	Prupe.5G009600_v2.0.a1 Prupe.5G009600_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1 Prupe.7G183300_v2.0.a1
pyrus_communis	pycom02g08980 pycom06g00860 pycom15g20570
rosa_chinensis	RchiOBHm_Chr2g0097121 RchiOBHm_Chr7g0215711
rosa_laevigata	RLG00000016704
rosa_multiflora	Rmu_co8032686.1_g000001 Rmu_sc0000898.1_g000018 Rmu_sc0001182.1_g000004 Rmu_sc0022481.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144960 Rroxscaffold_3G00243910
rosa_rugosa	Rorug02G0064200 Rorug02G0064300 Rorug02G0064300 Rorug07G0156200 Rorug07G0156200
rosa_samantha	Rh2AG111500 Rh2BG113500 Rh2CG115800 Rh2DG114800 Rh7AG293200 Rh7BG285500 Rh7CG313300 Rh7DG296500
rosa_wichuraiana	Rw2G008670 Rw7G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	108
AclWI	GGATC	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	264, 371
AluBI	AGCT	3 cut(s)	43, 148, 257
AluI	AGCT	3 cut(s)	43, 148, 257
Alw21I	GWGCWC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	145, 240
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	259, 318
BbsI	GAAGAC	3 cut(s)	53, 350, 363
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	157, 252
BccI	CCATC	3 cut(s)	56, 196, 220
BceAI	ACGGC	2 cut(s)	107, 116
BfaI	CTAG	1 cut(s)	311
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	2 cut(s)	146, 241
BlsI	GCNGC	2 cut(s)	147, 242
BmiI	GGNNCC	1 cut(s)	282
BmsI	GCATC	1 cut(s)	239
BpiI	GAAGAC	3 cut(s)	53, 350, 363
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	33
BseAI	TCCGGA	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	157, 252
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	383
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	259, 318
Bsp13I	TCCGGA	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	117, 184, 307
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	192
BspQI	GCTCTTC	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	3 cut(s)	117, 184, 307
BssT1I	CCWWGG	1 cut(s)	333
Bst6I	CTCTTC	2 cut(s)	10, 247
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	51
BstENI	CCTNNNNNAGG	1 cut(s)	381
BstKTI	GATC	3 cut(s)	120, 187, 310
BstMBI	GATC	3 cut(s)	117, 184, 307
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 173, 280
BstNSI	RCATGY	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	157, 252
BstV2I	GAAGAC	3 cut(s)	53, 350, 363
BstX2I	RGATCY	2 cut(s)	184, 307
BstYI	RGATCY	2 cut(s)	184, 307
BsuRI	GGCC	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	285
CciI	TCATGA	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	2 cut(s)	82, 361
CviJI	RGCY	5 cut(s)	43, 148, 167, 257, 316
CviKI_1	RGCY	5 cut(s)	43, 148, 167, 257, 316
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	3 cut(s)	119, 186, 309
DpnII	GATC	3 cut(s)	117, 184, 307
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	10, 247
EarI	CTCTTC	2 cut(s)	10, 247
Ecl136II	GAGCTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	259, 318
Eco53kI	GAGCTC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	2 cut(s)	259, 318
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	85, 364
FaiI	YATR	5 cut(s)	83, 158, 216, 362, 390
FatI	CATG	2 cut(s)	81, 360
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	146, 241
FriOI	GRGCYC	2 cut(s)	259, 318
Fsp4HI	GCNGC	2 cut(s)	146, 241
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	2 cut(s)	146, 241
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	109
Hin1II	CATG	2 cut(s)	85, 364
HinfI	GANTC	4 cut(s)	49, 302, 380, 394
HpaII	CCGG	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	54, 307
Hpy188III	TCNNGA	6 cut(s)	82, 109, 192, 311, 377, 384
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	70, 178
HpyCH4V	TGCA	2 cut(s)	72, 160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 173, 280
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	85, 364
Kpn2I	TCCGGA	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	117, 184, 307
LguI	GCTCTTC	1 cut(s)	247
Lsp1109I	GCAGC	2 cut(s)	157, 252
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	311
MalI	GATC	3 cut(s)	119, 186, 309
MboI	GATC	3 cut(s)	117, 184, 307
MboII	GAAGA	6 cut(s)	27, 58, 211, 264, 355, 368
MflI	RGATCY	2 cut(s)	184, 307
MhlI	GDGCHC	2 cut(s)	259, 318
MlyI	GAGTC	1 cut(s)	43
MroI	TCCGGA	1 cut(s)	108
MspI	CCGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	3 cut(s)	128, 173, 280
NdeII	GATC	3 cut(s)	117, 184, 307
NlaIII	CATG	2 cut(s)	85, 364
NlaIV	GGNNCC	1 cut(s)	282
NspI	RCATGY	1 cut(s)	364
PagI	TCATGA	1 cut(s)	81
PceI	AGGCCT	1 cut(s)	167
PciI	ACATGT	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	302, 380, 394
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	147, 242
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	282
PsuI	RGATCY	2 cut(s)	184, 307
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SacI	GAGCTC	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	247
SatI	GCNGC	2 cut(s)	146, 241
Sau3AI	GATC	3 cut(s)	117, 184, 307
SchI	GAGTC	1 cut(s)	43
SduI	GDGCHC	2 cut(s)	259, 318
SetI	ASST	4 cut(s)	45, 81, 150, 259
SfaNI	GCATC	1 cut(s)	239
SseBI	AGGCCT	1 cut(s)	167
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	259
StuI	AGGCCT	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	333
TaqI	TCGA	1 cut(s)	99
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	3 cut(s)	302, 380, 394
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	2 cut(s)	145, 240
TspDTI	ATGAA	2 cut(s)	44, 212
TspGWI	ACGGA	2 cut(s)	101, 304
TspRI	CASTG	1 cut(s)	178
Tth111I	GACNNNGTC	1 cut(s)	95
XagI	CCTNNNNNAGG	1 cut(s)	381
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.