Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004491

Physical Location & Seq

Genomic Coordinates Reverse (-)

564085 .. 565925

Gene Structure 1841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCAGGTGGCTTAGATATGTCACTTGATGATATCATCAAATCTAATCGAAAACCTACTGGATCTCGCGGCCGAGGAGGCATTGGAGGTGGCAATAACACCGGTGGTCGCGGTGGTTCCGGTTCTAATTCCGGTCCGTCTCGTCGGTTTGCTAACCGCGTAGGAGCCAGAACGGCGCCGTATTCAAGGCCGATTCAACAACAACAAGCTCATGATGCGATGTGGCAAAACGACGTCTTCGCGACTGATGCGTCTGTGGCGGCGGCTTTTGGGCATCATCAGACTGCTGTTGTTGGTGGTGGCTCGTCTATCGAGACTGGAACTAAGCTTTACATTTCAAACTTAGACTATGGTGTCTCCAACGAAGATATCAAGGAGCTTTTCTCTGAGGTTGGTGATCTTAAGCGATATGGGATTCACTATGATAGGAGTGGAAGATCAAAGGGGACTGCTGAAGTTGTTTTCTCGAGGCGTGGGGATGCATTGGCAGCTGTCAAGCGTTACAACAATGTTCAGTTGGATGGAAAACTGATGAAGATAGAGATTGTTGGGACTAATCTTTCTGCTCCAGCTCTTCCCATTCTTGCTACAGCTCAGATTCCTTTTCCTACTAATGGGATACTTGGCAACTTTAATGAGAACTTTAATGGCAATTTCAATGGCAACTTCAATGGAAACTTCAGAGGCAGAGGAAGAGGCGGTTTTATGGGGCGTCCTCGTGGTGGTGGTTTTGGCGGTGGTAATTTCAGAGGTGGCAGGGGAGCTAGAGGACGTGGTGGTCGTGGCAGTGGTGGAAGAGGACGTGATGAAAACGTATCTGCAGAGGATCTTGATGCTGAATTGGACAAGTACCACAAAGAGGCAATGGAAACAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

292

Amino Acids

30.78

Weight (kDa)

9.98

Isoelectric Point (pI)

29.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	110 - 178	2.9e-14	RNA recognition motif
FoP_duplication	PF13865	235 - 284	4.5e-06	C-terminal duplication domain of Friend of PRMT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02530 AT5G02530
malus_domestica	MD07G1194100.v1.1
prunus_persica	Prupe.2G231500_v2.0.a1 Prupe.2G231500_v2.0.a1
pyrus_communis	pycom07g18290
rosa_chinensis	RchiOBHm_Chr1g0366271 RchiOBHm_Chr3g0492141
rosa_laevigata	RLG00000022825 RLG00000027356
rosa_multiflora	Rmu_sc0003736.1_g000006 Rmu_sc0011454.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290370
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0266100 Rorug02G0266200 Rorug02G0266700.1 Rorug02G0267400 Rorug02G0268700 Rorug02G0268700 Rorug02G0269500 Rorug02G0270000 Rorug03G0246700 Rorug03G0247400
rosa_samantha	Rh1AG336700 Rh1BG298200 Rh1DG329700 Rh3CG333100 Rh3DG335100
rosa_wichuraiana	Rw1G029840 Rw3G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	250, 353, 777
AatII	GACGTC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	175
AccII	CGCG	4 cut(s)	69, 111, 159, 242
AciI	CCGC	7 cut(s)	69, 111, 157, 260, 263, 699, 735
AclWI	GGATC	2 cut(s)	70, 834
AcoI	YGGCCR	1 cut(s)	70
AcuI	CTGAAG	2 cut(s)	474, 664
AcyI	GRCGYC	3 cut(s)	176, 234, 712
AfaI	GTAC	1 cut(s)	851
AfiI	CCNNNNNNNGG	3 cut(s)	614, 722, 859
AflII	CTTAAG	1 cut(s)	401
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	5 cut(s)	186, 197, 339, 658, 670
AjiI	CACGTC	2 cut(s)	773, 803
AluBI	AGCT	7 cut(s)	209, 328, 379, 491, 572, 593, 764
AluI	AGCT	7 cut(s)	209, 328, 379, 491, 572, 593, 764
Alw26I	GTCTC	3 cut(s)	144, 308, 361
AlwI	GGATC	2 cut(s)	70, 834
Ama87I	CYCGRG	1 cut(s)	466
AoxI	GGCC	2 cut(s)	70, 188
ApeKI	GCWGC	1 cut(s)	488
AsiGI	ACCGGT	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	175
BauI	CACGAG	1 cut(s)	717
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	1 cut(s)	515
BceAI	ACGGC	2 cut(s)	163, 189
BciVI	GTATCC	1 cut(s)	612
BcoDI	GTCTC	3 cut(s)	144, 308, 361
BfaI	CTAG	1 cut(s)	765
BfmI	CTRYAG	2 cut(s)	588, 819
BfoI	RGCGCY	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	612
BglI	GCCNNNNNGGC	2 cut(s)	78, 173
BisI	GCNGC	4 cut(s)	70, 261, 264, 489
BlsI	GCNGC	4 cut(s)	71, 262, 265, 490
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	466
BmgBI	CACGTC	2 cut(s)	773, 803
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	3 cut(s)	118, 166, 177
BmsI	GCATC	5 cut(s)	205, 238, 283, 469, 823
BpiI	GAAGAC	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpmI	CTGGAG	1 cut(s)	552
BsaHI	GRCGYC	3 cut(s)	176, 234, 712
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	3 cut(s)	101, 119, 131
Bsc4I	CCNNNNNNNGG	3 cut(s)	614, 722, 859
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	64, 322
Bse3DI	GCAATG	1 cut(s)	870
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	2 cut(s)	484, 526
BseLI	CCNNNNNNNGG	3 cut(s)	614, 722, 859
BseMI	GCAATG	1 cut(s)	870
BseMII	CTCAG	2 cut(s)	378, 608
BseNI	ACTGG	2 cut(s)	64, 322
BseRI	GAGGAG	1 cut(s)	90
BseX3I	CGGCCG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	500
Bsh1236I	CGCG	4 cut(s)	69, 111, 159, 242
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	72, 190
BshNI	GGYRCC	1 cut(s)	175
BshTI	ACCGGT	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	466
BsiSI	CCGG	3 cut(s)	102, 120, 132
BslFI	GGGAC	2 cut(s)	460, 565
BslI	CCNNNNNNNGG	3 cut(s)	614, 722, 859
BsmAI	GTCTC	3 cut(s)	144, 308, 361
BsmBI	CGTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	460, 565
BsnI	GGCC	2 cut(s)	72, 190
BsoBI	CYCGRG	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	62, 397, 437, 826
Bsp68I	TCGCGA	1 cut(s)	242
BspACI	CCGC	7 cut(s)	69, 111, 157, 260, 263, 699, 735
BspANI	GGCC	2 cut(s)	72, 190
BspCNI	CTCAG	2 cut(s)	379, 607
BspFNI	CGCG	4 cut(s)	69, 111, 159, 242
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	118, 166, 177
BspMAI	CTGCAG	1 cut(s)	823
BspPI	GGATC	2 cut(s)	70, 834
BspQI	GCTCTTC	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	870
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	64, 322
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	4 cut(s)	62, 397, 437, 826
BssNI	GRCGYC	3 cut(s)	176, 234, 712
BssSI	CACGAG	1 cut(s)	717
Bst2BI	CACGAG	1 cut(s)	717
Bst6I	CTCTTC	3 cut(s)	579, 688, 790
BstACI	GRCGYC	3 cut(s)	176, 234, 712
BstAFI	CTTAAG	1 cut(s)	401
BstDEI	CTNAG	5 cut(s)	13, 324, 343, 387, 594
BstF5I	GGATG	2 cut(s)	484, 526
BstFNI	CGCG	4 cut(s)	69, 111, 159, 242
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	4 cut(s)	65, 400, 440, 829
BstMAI	GTCTC	3 cut(s)	144, 308, 361
BstMBI	GATC	4 cut(s)	62, 397, 437, 826
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	6 cut(s)	78, 173, 215, 248, 257, 488
BstSFI	CTRYAG	2 cut(s)	588, 819
BstUI	CGCG	4 cut(s)	69, 111, 159, 242
BstV1I	GCAGC	1 cut(s)	500
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	2 cut(s)	62, 826
BstYI	RGATCY	2 cut(s)	62, 826
BstZI	CGGCCG	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	612
BsuRI	GGCC	2 cut(s)	72, 190
BtgZI	GCGATG	1 cut(s)	233
BtrI	CACGTC	2 cut(s)	773, 803
BtsCI	GGATG	2 cut(s)	484, 526
BtsI	GCAGTG	1 cut(s)	793
BtsIMutI	CAGTG	1 cut(s)	793
BtuMI	TCGCGA	1 cut(s)	242
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	134
CpoI	CGGWCCG	1 cut(s)	134
CseI	GACGC	2 cut(s)	240, 701
Csp6I	GTAC	1 cut(s)	850
CspAI	ACCGGT	1 cut(s)	101
CspI	CGGWCCG	1 cut(s)	134
CviAII	CATG	1 cut(s)	212
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	5 cut(s)	13, 324, 343, 387, 594
DinI	GGCGCC	1 cut(s)	177
DpnI	GATC	4 cut(s)	64, 399, 439, 828
DpnII	GATC	4 cut(s)	62, 397, 437, 826
DrdI	GACNNNNNNGTC	3 cut(s)	250, 353, 777
DseDI	GACNNNNNNGTC	3 cut(s)	250, 353, 777
EaeI	YGGCCR	1 cut(s)	70
EagI	CGGCCG	1 cut(s)	70
Eam1104I	CTCTTC	3 cut(s)	579, 688, 790
EarI	CTCTTC	3 cut(s)	579, 688, 790
EclXI	CGGCCG	1 cut(s)	70
Eco32I	GATATC	2 cut(s)	34, 370
Eco47I	GGWCC	1 cut(s)	134
Eco52I	CGGCCG	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	474, 664
Eco88I	CYCGRG	1 cut(s)	466
EcoRV	GATATC	2 cut(s)	34, 370
EcoT22I	ATGCAT	1 cut(s)	484
EgeI	GGCGCC	1 cut(s)	177
EheI	GGCGCC	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	1 cut(s)	215
FaiI	YATR	6 cut(s)	20, 213, 351, 411, 423, 707
FaqI	GGGAC	2 cut(s)	460, 565
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	4 cut(s)	70, 261, 264, 489
FokI	GGATG	2 cut(s)	491, 533
Fsp4HI	GCNGC	4 cut(s)	70, 261, 264, 489
FspBI	CTAG	1 cut(s)	765
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	4 cut(s)	70, 261, 264, 489
GsuI	CTGGAG	1 cut(s)	552
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	72, 190
HapII	CCGG	3 cut(s)	102, 120, 132
HgaI	GACGC	2 cut(s)	240, 701
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	3 cut(s)	176, 234, 712
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	3 cut(s)	193, 415, 598
HpaII	CCGG	3 cut(s)	102, 120, 132
HphI	GGTGA	1 cut(s)	407
Hpy188I	TCNGA	5 cut(s)	282, 388, 597, 683, 749
Hpy188III	TCNNGA	5 cut(s)	212, 241, 313, 466, 830
Hpy99I	CGWCG	2 cut(s)	147, 236
HpyCH4IV	ACGT	4 cut(s)	234, 772, 802, 813
HpyCH4V	TGCA	2 cut(s)	482, 821
HpyF10VI	GCNNNNNNNGC	6 cut(s)	78, 173, 215, 248, 257, 488
HpyF3I	CTNAG	5 cut(s)	13, 324, 343, 387, 594
HpySE526I	ACGT	4 cut(s)	234, 772, 802, 813
Hsp92I	GRCGYC	3 cut(s)	176, 234, 712
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	176
KasI	GGCGCC	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	62, 397, 437, 826
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	4 cut(s)	164, 376, 571, 761
LpnPI	CCDG	8 cut(s)	45, 115, 133, 145, 181, 303, 582, 742
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	5 cut(s)	205, 238, 283, 469, 823
MaeI	CTAG	1 cut(s)	765
MaeII	ACGT	4 cut(s)	234, 772, 802, 813
MaeIII	GTNAC	2 cut(s)	21, 500
MalI	GATC	4 cut(s)	64, 399, 439, 828
MboI	GATC	4 cut(s)	62, 397, 437, 826
MboII	GAAGA	7 cut(s)	229, 377, 447, 547, 566, 705, 807
MflI	RGATCY	2 cut(s)	62, 826
MluCI	AATT	4 cut(s)	127, 652, 742, 839
Mly113I	GGCGCC	1 cut(s)	176
MmeI	TCCRAC	2 cut(s)	384, 498
Mph1103I	ATGCAT	1 cut(s)	484
MseI	TTAA	3 cut(s)	402, 633, 645
MspA1I	CMGCKG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	3 cut(s)	102, 120, 132
MvnI	CGCG	4 cut(s)	69, 111, 159, 242
MwoI	GCNNNNNNNGC	6 cut(s)	78, 173, 215, 248, 257, 488
NarI	GGCGCC	1 cut(s)	176
NdeII	GATC	4 cut(s)	62, 397, 437, 826
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	3 cut(s)	118, 166, 177
NmeAIII	GCCGAG	1 cut(s)	98
NmuCI	GTSAC	1 cut(s)	21
NruI	TCGCGA	1 cut(s)	242
NsiI	ATGCAT	1 cut(s)	484
PaeR7I	CTCGAG	1 cut(s)	466
PagI	TCATGA	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	778
PfeI	GAWTC	3 cut(s)	193, 415, 598
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	71, 262, 265, 490
PluTI	GGCGCC	1 cut(s)	179
PspN4I	GGNNCC	3 cut(s)	118, 166, 177
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	823
PsuI	RGATCY	2 cut(s)	62, 826
PvuII	CAGCTG	1 cut(s)	491
RruI	TCGCGA	1 cut(s)	242
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
Rsr2I	CGGWCCG	1 cut(s)	134
RsrII	CGGWCCG	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	3 cut(s)	402, 633, 645
SatI	GCNGC	4 cut(s)	70, 261, 264, 489
Sau3AI	GATC	4 cut(s)	62, 397, 437, 826
Sau96I	GGNCC	1 cut(s)	134
SfaNI	GCATC	5 cut(s)	205, 238, 283, 469, 823
SfcI	CTRYAG	2 cut(s)	588, 819
SfoI	GGCGCC	1 cut(s)	177
Sfr274I	CTCGAG	1 cut(s)	466
SgrAI	CRCCGGYG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	466
SmlI	CTYRAG	2 cut(s)	401, 466
SmoI	CTYRAG	2 cut(s)	401, 466
Sse9I	AATT	4 cut(s)	127, 652, 742, 839
SsiI	CCGC	7 cut(s)	69, 111, 157, 260, 263, 699, 735
SspDI	GGCGCC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	765
TaiI	ACGT	4 cut(s)	237, 775, 805, 816
TaqI	TCGA	3 cut(s)	49, 312, 467
TasI	AATT	4 cut(s)	127, 652, 742, 839
TauI	GCSGC	3 cut(s)	72, 263, 266
TfiI	GAWTC	3 cut(s)	193, 415, 598
Tru1I	TTAA	3 cut(s)	402, 633, 645
Tru9I	TTAA	3 cut(s)	402, 633, 645
TscAI	CASTG	1 cut(s)	793
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	2 cut(s)	548, 822
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	793
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	134
XhoI	CTCGAG	1 cut(s)	466
XspI	CTAG	1 cut(s)	765
ZraI	GACGTC	1 cut(s)	235
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.