Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004491

Physical Location & Seq

Genomic Coordinates Forward (+)

20772151 .. 20774791

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18290.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTTAGAATTATTTATAAAAAAAAAAAAATTAAAGATGTACACGGTACTGCTGAGCCCTGCAAAACCAAAAACCCTTTCACTCACTCACTCACTGTCTTGCAAAACCCTCAGCTCTCGGCCATTTCCCGAAATGCCCCCGCCGCTGGACATGTCGCTCGACGATCTCATCTGGAGGCGCAAGGCGGAGAAGTCGGAAGCCGGAGGGCATCGAGGGCATCGCCGTGATTTCAGAGTGCCCCCAGGCGGCCGAGGCTACGCGCCGGGACCCACTCGATTGGAGTTAGAGGGTTGGATGAGCAAAAAAAAGTTTACCTGGAAGGCTGGAACCAAGATTGAGAATGTGTCGTTTCATGTCTCCTGGTGCTGCTCAATCCTACGGTTGGATGTTTCTCAGTTCTTCTTGATGTTGTTTAGCTCGGCCATCAGCATGACAATTCATGCATTAGAACCGCATGTGTCAAACTTAAACTTGGTTGAACTCTATGGAACGGCGGAAGTTAGATATCTACACCATTCAGATGCTCTAACAGCAATCAAGAAATATAACGATGTTCAGCTTGATGGAAAGCCAATGAAAATTGAGCTTGTGGGAGTGAGTCCTGTTGCTTCTGTTCCTGTGCCTCCAATTACAAGTAGATTGATGGGAAAACCAAACGTTGTCTTCCAAAGTGGACAAGGTCAAGCTGGTGGTAGGGGATTCTTTCATGGTCGTGGTACTGGTGGCTTTGGACTTGGAAGGGGCCATGGACAGGTGAAGCAGCCTCGTGAGCAGGTGAAGCCGCCTCGTGAGAAAGTGACTTTTGAAGATCTGGATGCTGACTTGGAGAACTACCGCCAAAAACGCTTGCTGGTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

287

Amino Acids

32.01

Weight (kDa)

9.89

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02530 AT5G02530
malus_domestica	MD07G1194100.v1.1
prunus_persica	Prupe.2G231500_v2.0.a1 Prupe.2G231500_v2.0.a1
pyrus_communis	pycom07g18290
rosa_chinensis	RchiOBHm_Chr1g0366271 RchiOBHm_Chr3g0492141
rosa_laevigata	RLG00000022825 RLG00000027356
rosa_multiflora	Rmu_sc0003736.1_g000006 Rmu_sc0011454.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290370
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0266100 Rorug02G0266200 Rorug02G0266700.1 Rorug02G0267400 Rorug02G0268700 Rorug02G0268700 Rorug02G0269500 Rorug02G0270000 Rorug03G0246700 Rorug03G0247400
rosa_samantha	Rh1AG336700 Rh1BG298200 Rh1DG329700 Rh3CG333100 Rh3DG335100
rosa_wichuraiana	Rw1G029840 Rw3G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AarI	CACCTGC	1 cut(s)	763
Acc36I	ACCTGC	1 cut(s)	763
AccII	CGCG	1 cut(s)	260
AciI	CCGC	8 cut(s)	140, 143, 185, 246, 452, 494, 782, 835
AclI	AACGTT	1 cut(s)	657
AcoI	YGGCCR	3 cut(s)	119, 247, 420
AfaI	GTAC	3 cut(s)	41, 48, 718
AfiI	CCNNNNNNNGG	4 cut(s)	145, 245, 382, 751
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	479, 806
AjnI	CCWGG	3 cut(s)	241, 314, 359
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	5 cut(s)	114, 417, 559, 586, 686
AluI	AGCT	5 cut(s)	114, 417, 559, 586, 686
Alw26I	GTCTC	1 cut(s)	361
AoxI	GGCC	4 cut(s)	119, 247, 420, 742
ApeKI	GCWGC	2 cut(s)	366, 760
AspLEI	GCGC	2 cut(s)	180, 262
AspS9I	GGNCC	2 cut(s)	266, 742
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	766, 787
AvaII	GGWCC	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	59
BauI	CACGAG	2 cut(s)	765, 786
BbsI	GAAGAC	1 cut(s)	655
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	353, 772
BccI	CCATC	3 cut(s)	431, 557, 637
BceAI	ACGGC	2 cut(s)	207, 507
BciT130I	CCWGG	3 cut(s)	243, 316, 361
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	763
BglII	AGATCT	1 cut(s)	808
BisI	GCNGC	5 cut(s)	143, 247, 367, 761, 782
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	5 cut(s)	144, 248, 368, 762, 783
Bme1390I	CCNGG	4 cut(s)	243, 264, 316, 361
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	266, 742
BmiI	GGNNCC	4 cut(s)	267, 268, 328, 743
BmrFI	CCNGG	4 cut(s)	243, 264, 316, 361
BmsI	GCATC	4 cut(s)	217, 226, 511, 805
BpiI	GAAGAC	1 cut(s)	655
BpmI	CTGGAG	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	264
BsaJI	CCNNGG	3 cut(s)	241, 250, 745
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 245, 382, 751
Bse1I	ACTGG	1 cut(s)	724
BseBI	CCWGG	3 cut(s)	243, 316, 361
BseDI	CCNNGG	3 cut(s)	241, 250, 745
BseGI	GGATG	3 cut(s)	300, 391, 820
BseLI	CCNNNNNNNGG	4 cut(s)	145, 245, 382, 751
BseMII	CTCAG	3 cut(s)	44, 124, 407
BseNI	ACTGG	1 cut(s)	724
BseSI	GKGCMC	1 cut(s)	240
BseX3I	CGGCCG	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	353, 772
Bsh1236I	CGCG	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	4 cut(s)	121, 249, 422, 744
BsiEI	CGRYCG	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	201, 263
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	4 cut(s)	145, 245, 382, 751
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	4 cut(s)	121, 249, 422, 744
Bsp1286I	GDGCHC	2 cut(s)	59, 240
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	163, 808
Bsp1720I	GCTNAGC	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	745
BspACI	CCGC	8 cut(s)	140, 143, 185, 246, 452, 494, 782, 835
BspANI	GGCC	4 cut(s)	121, 249, 422, 744
BspCNI	CTCAG	3 cut(s)	45, 123, 406
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	4 cut(s)	267, 268, 328, 743
BspMI	ACCTGC	1 cut(s)	763
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	724
BssECI	CCNNGG	3 cut(s)	241, 250, 745
BssMI	GATC	2 cut(s)	163, 808
BssSI	CACGAG	2 cut(s)	765, 786
BssT1I	CCWWGG	1 cut(s)	745
Bst2BI	CACGAG	2 cut(s)	765, 786
Bst2UI	CCWGG	3 cut(s)	243, 316, 361
Bst4CI	ACNGT	3 cut(s)	46, 96, 381
BstAUI	TGTACA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	848
BstDEI	CTNAG	3 cut(s)	53, 110, 393
BstDSI	CCRYGG	1 cut(s)	745
BstF5I	GGATG	3 cut(s)	300, 391, 820
BstFNI	CGCG	1 cut(s)	260
BstHHI	GCGC	2 cut(s)	180, 262
BstKTI	GATC	2 cut(s)	166, 811
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	2 cut(s)	163, 808
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	7 cut(s)	142, 214, 252, 530, 769, 778, 843
BstNI	CCWGG	3 cut(s)	243, 316, 361
BstNSI	RCATGY	2 cut(s)	154, 458
BstSCI	CCNGG	4 cut(s)	241, 262, 314, 359
BstSLI	GKGCMC	1 cut(s)	240
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	353, 772
BstV2I	GAAGAC	1 cut(s)	655
BstX2I	RGATCY	1 cut(s)	808
BstXI	CCANNNNNNTGG	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	808
BstZI	CGGCCG	1 cut(s)	247
BsuRI	GGCC	4 cut(s)	121, 249, 422, 744
BtgI	CCRYGG	1 cut(s)	745
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	3 cut(s)	300, 391, 820
BtsIMutI	CAGTG	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	763
Cac8I	GCNNGC	1 cut(s)	848
CfoI	GCGC	2 cut(s)	180, 262
Cfr13I	GGNCC	2 cut(s)	266, 742
Csp6I	GTAC	3 cut(s)	40, 47, 717
CviAII	CATG	7 cut(s)	151, 353, 430, 440, 455, 707, 746
CviQI	GTAC	3 cut(s)	40, 47, 717
DdeI	CTNAG	3 cut(s)	53, 110, 393
DpnI	GATC	2 cut(s)	165, 810
DpnII	GATC	2 cut(s)	163, 808
EaeI	YGGCCR	3 cut(s)	119, 247, 420
EagI	CGGCCG	1 cut(s)	247
EciI	GGCGGA	2 cut(s)	200, 509
EclXI	CGGCCG	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	745
Eco24I	GRGCYC	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	506
Eco47I	GGWCC	1 cut(s)	266
Eco52I	CGGCCG	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	3 cut(s)	241, 314, 359
EcoRV	GATATC	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	745
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	745
FaeI	CATG	7 cut(s)	154, 356, 433, 443, 458, 710, 749
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	7 cut(s)	150, 352, 429, 439, 454, 706, 745
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	5 cut(s)	143, 247, 367, 761, 782
FokI	GGATG	3 cut(s)	307, 398, 827
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	5 cut(s)	143, 247, 367, 761, 782
GlaI	GCGC	2 cut(s)	179, 261
GluI	GCNGC	5 cut(s)	143, 247, 367, 761, 782
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	4 cut(s)	121, 249, 422, 744
HapII	CCGG	2 cut(s)	201, 263
HhaI	GCGC	2 cut(s)	180, 262
Hin1II	CATG	7 cut(s)	154, 356, 433, 443, 458, 710, 749
Hin6I	GCGC	2 cut(s)	178, 260
HinP1I	GCGC	2 cut(s)	178, 260
HinfI	GANTC	2 cut(s)	598, 699
HpaII	CCGG	2 cut(s)	201, 263
HphI	GGTGA	2 cut(s)	766, 787
Hpy166II	GTNNAC	3 cut(s)	42, 312, 674
Hpy188I	TCNGA	3 cut(s)	196, 233, 520
Hpy188III	TCNNGA	7 cut(s)	128, 172, 403, 538, 767, 788, 812
Hpy8I	GTNNAC	3 cut(s)	42, 312, 674
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	313, 732
HpyCH4III	ACNGT	3 cut(s)	46, 96, 381
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	3 cut(s)	62, 102, 443
HpyF10VI	GCNNNNNNNGC	7 cut(s)	142, 214, 252, 530, 769, 778, 843
HpyF3I	CTNAG	3 cut(s)	53, 110, 393
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	7 cut(s)	154, 356, 433, 443, 458, 710, 749
HspAI	GCGC	2 cut(s)	178, 260
KflI	GGGWCCC	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	163, 808
Lsp1109I	GCAGC	2 cut(s)	353, 772
LweI	GCATC	4 cut(s)	217, 226, 511, 805
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	1 cut(s)	796
MalI	GATC	2 cut(s)	165, 810
MboI	GATC	2 cut(s)	163, 808
MboII	GAAGA	3 cut(s)	391, 655, 818
MflI	RGATCY	1 cut(s)	808
MhlI	GDGCHC	2 cut(s)	59, 240
MluCI	AATT	6 cut(s)	8, 29, 435, 579, 627, 856
MlyI	GAGTC	1 cut(s)	607
MmeI	TCCRAC	3 cut(s)	174, 272, 363
MnlI	CCTC	9 cut(s)	119, 168, 197, 206, 245, 280, 633, 774, 795
Mph1103I	ATGCAT	1 cut(s)	445
MseI	TTAA	2 cut(s)	32, 467
MslI	CAYNNNNRTG	4 cut(s)	222, 428, 519, 711
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	2 cut(s)	201, 263
MspR9I	CCNGG	4 cut(s)	243, 264, 316, 361
MvaI	CCWGG	3 cut(s)	243, 316, 361
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	7 cut(s)	142, 214, 252, 530, 769, 778, 843
NciI	CCSGG	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	745
NdeII	GATC	2 cut(s)	163, 808
NlaIII	CATG	7 cut(s)	154, 356, 433, 443, 458, 710, 749
NlaIV	GGNNCC	4 cut(s)	267, 268, 328, 743
NmeAIII	GCCGAG	3 cut(s)	97, 275, 398
NmuCI	GTSAC	1 cut(s)	796
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	2 cut(s)	154, 458
PaqCI	CACCTGC	1 cut(s)	763
PciI	ACATGT	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	699
PflFI	GACNNNGTC	1 cut(s)	678
PkrI	GCNGC	5 cut(s)	144, 248, 368, 762, 783
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
PpuMI	RGGWCCY	1 cut(s)	266
PscI	ACATGT	1 cut(s)	150
PsiI	TTATAA	1 cut(s)	17
Psp1406I	AACGTT	1 cut(s)	657
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	3 cut(s)	241, 314, 359
PspGI	CCWGG	3 cut(s)	241, 314, 359
PspN4I	GGNNCC	4 cut(s)	267, 268, 328, 743
PspPI	GGNCC	2 cut(s)	266, 742
PspPPI	RGGWCCY	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	808
PsyI	GACNNNGTC	1 cut(s)	678
RsaI	GTAC	3 cut(s)	41, 48, 718
RsaNI	GTAC	3 cut(s)	40, 47, 717
RseI	CAYNNNNRTG	4 cut(s)	222, 428, 519, 711
SaqAI	TTAA	2 cut(s)	32, 467
SatI	GCNGC	5 cut(s)	143, 247, 367, 761, 782
Sau3AI	GATC	2 cut(s)	163, 808
Sau96I	GGNCC	2 cut(s)	266, 742
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	4 cut(s)	243, 264, 316, 361
SduI	GDGCHC	2 cut(s)	59, 240
SfaNI	GCATC	4 cut(s)	217, 226, 511, 805
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	4 cut(s)	222, 428, 519, 711
Sse9I	AATT	6 cut(s)	8, 29, 435, 579, 627, 856
SsiI	CCGC	8 cut(s)	140, 143, 185, 246, 452, 494, 782, 835
StyD4I	CCNGG	4 cut(s)	241, 262, 314, 359
StyI	CCWWGG	1 cut(s)	745
TaaI	ACNGT	3 cut(s)	46, 96, 381
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	3 cut(s)	159, 211, 274
TasI	AATT	6 cut(s)	8, 29, 435, 579, 627, 856
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	3 cut(s)	145, 249, 784
TfiI	GAWTC	1 cut(s)	699
Tru1I	TTAA	2 cut(s)	32, 467
Tru9I	TTAA	2 cut(s)	32, 467
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	2 cut(s)	366, 760
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	4 cut(s)	341, 428, 590, 695
TspRI	CASTG	1 cut(s)	99
Tth111I	GACNNNGTC	1 cut(s)	678
VpaK11BI	GGWCC	1 cut(s)	266
XceI	RCATGY	2 cut(s)	154, 458
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.