Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004491

Physical Location & Seq

Genomic Coordinates Forward (+)

28520133 .. 28524052

Gene Structure 3920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0269500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCCGATACTGAGGACATTCAGCCTCTCGTTTGTGACAATGGGACTGGAATGGTGAAGGCTGGTTTTGCCGGTGATGATGCTCCCAGGGCTGTGTTCCCTAGTATTGTTGGTCGGCCACGACATACTGGTGTCATGGTTGGTATGGGCCAGAAGGATGCCTATGTAGGTGATGAAGCACAGTCTAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATAGTAAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTACAATGAGCTGCGTGTTGCTCCTGAAGAGCACCCAGTTCTTCTTACTGAGGCTCCTCTTAACCCCAAGGCCAACAGAGAAAAGATGACGCAGATTATGTTTGAGACCTTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCTGTTCTCTCTCTGTATGCTAGTGGTCGTACAACTGGTATTGTGCTTGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTACGAAGGTTATGCCCTCCCCCACGCCATCCTTCGTCTGGACCTTGCTGGACGTGACCTTACAGATGCTTTGATGAAGATTCTCACTGAAAGAGGGTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCATATGTTGCCCTTGACTATGAACAAGAACTTGAGACTGCCAAGAGCAGCTCCTCAGTTGAGAAGAACTATGAGCTTCCTGACGGCCAAGTCATCACAATTGGAGCTGAGAGATTCAGGTGCCCAGAAGTCCTCTTCCAACCATCCCTCATCGGAATGGAAGCTGCCGGCATTCATGAGACTACCTATAACTCCATTATGAAGTGTGATGTGGATATCAGAAAAGACTTGTATGGCAACATTGTGCTCAGTGGAGGTTCAACTATGTTCCCTGGTATTGCAGACAGGATGAGCAAGGAAATCACTGCTCTTGCTCCAAGCAGCATGAAGATCAAGGTTGTGGCTCCACCAGAGAGGAAGTACAGTGTCTGGATCGGAGGGTCCATTCTTGCTTCCCTCAGTACCTTCCAACAGATGTGGATTTCTAAGGGAGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

377

Amino Acids

41.73

Weight (kDa)

5.31

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	5 - 377	2.9e-146	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02530 AT5G02530
malus_domestica	MD07G1194100.v1.1
prunus_persica	Prupe.2G231500_v2.0.a1 Prupe.2G231500_v2.0.a1
pyrus_communis	pycom07g18290
rosa_chinensis	RchiOBHm_Chr1g0366271 RchiOBHm_Chr3g0492141
rosa_laevigata	RLG00000022825 RLG00000027356
rosa_multiflora	Rmu_sc0003736.1_g000006 Rmu_sc0011454.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290370
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0266100 Rorug02G0266200 Rorug02G0266700.1 Rorug02G0267400 Rorug02G0268700 Rorug02G0268700 Rorug02G0269500 Rorug02G0270000 Rorug03G0246700 Rorug03G0247400
rosa_samantha	Rh1AG336700 Rh1BG298200 Rh1DG329700 Rh3CG333100 Rh3DG335100
rosa_wichuraiana	Rw1G029840 Rw3G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	743
AccB1I	GGYRCC	1 cut(s)	774
AclWI	GGATC	1 cut(s)	1034
AcoI	YGGCCR	3 cut(s)	3, 116, 739
AcuI	CTGAAG	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	4 cut(s)	448, 599, 1016, 1057
AfiI	CCNNNNNNNGG	1 cut(s)	538
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	3 cut(s)	208, 388, 915
AjiI	CACGTC	1 cut(s)	554
AjnI	CCWGG	3 cut(s)	86, 414, 925
AluBI	AGCT	6 cut(s)	286, 652, 705, 730, 761, 818
AluI	AGCT	6 cut(s)	286, 652, 705, 730, 761, 818
Alw21I	GWGCWC	2 cut(s)	309, 903
Alw26I	GTCTC	3 cut(s)	374, 683, 827
AlwI	GGATC	1 cut(s)	1034
AlwNI	CAGNNNCTG	1 cut(s)	1023
AoxI	GGCC	5 cut(s)	3, 116, 148, 345, 739
ApeKI	GCWGC	4 cut(s)	286, 702, 818, 975
Asp700I	GAANNNNTTC	1 cut(s)	1127
AspS9I	GGNCC	4 cut(s)	148, 541, 1035, 1103
AsuHPI	GGTGA	5 cut(s)	67, 86, 182, 485, 598
AvaII	GGWCC	3 cut(s)	541, 1035, 1103
BaeGI	GKGCMC	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	774
Bbv12I	GWGCWC	2 cut(s)	309, 903
BbvI	GCAGC	4 cut(s)	273, 714, 805, 987
BccI	CCATC	5 cut(s)	419, 470, 536, 805, 1114
BceAI	ACGGC	1 cut(s)	754
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	3 cut(s)	88, 416, 927
BcoDI	GTCTC	3 cut(s)	374, 683, 827
BfaI	CTAG	2 cut(s)	102, 438
BglI	GCCNNNNNGGC	1 cut(s)	416
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	4 cut(s)	287, 703, 819, 976
BlsI	GCNGC	4 cut(s)	288, 704, 820, 977
Bme1390I	CCNGG	3 cut(s)	88, 416, 927
Bme18I	GGWCC	3 cut(s)	541, 1035, 1103
BmgBI	CACGTC	1 cut(s)	554
BmgT120I	GGNCC	4 cut(s)	148, 541, 1035, 1103
BmiI	GGNNCC	4 cut(s)	330, 776, 999, 1036
BmrFI	CCNGG	3 cut(s)	88, 416, 927
BmrI	ACTGGG	2 cut(s)	250, 305
BmsI	GCATC	4 cut(s)	70, 148, 274, 556
BmuI	ACTGGG	2 cut(s)	250, 305
BpuEI	CTTGAG	1 cut(s)	707
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	4 cut(s)	86, 87, 342, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse118I	RCCGGY	2 cut(s)	71, 821
Bse1I	ACTGG	5 cut(s)	52, 133, 245, 311, 457
BseBI	CCWGG	3 cut(s)	88, 416, 927
BseDI	CCNNGG	4 cut(s)	86, 87, 342, 925
BseGI	GGATG	7 cut(s)	163, 250, 411, 528, 797, 948, 1106
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseMII	CTCAG	5 cut(s)	315, 723, 753, 916, 1066
BseNI	ACTGG	5 cut(s)	52, 133, 245, 311, 457
BseRI	GAGGAG	2 cut(s)	321, 697
BseSI	GKGCMC	1 cut(s)	779
BseXI	GCAGC	4 cut(s)	273, 714, 805, 987
BshFI	GGCC	5 cut(s)	5, 118, 150, 347, 741
BshNI	GGYRCC	1 cut(s)	774
BsiHKAI	GWGCWC	2 cut(s)	309, 903
BsiSI	CCGG	2 cut(s)	72, 822
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmAI	GTCTC	3 cut(s)	374, 683, 827
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	5 cut(s)	5, 118, 150, 347, 741
Bso31I	GGTCTC	1 cut(s)	374
Bsp1286I	GDGCHC	3 cut(s)	309, 779, 903
Bsp143I	GATC	3 cut(s)	258, 984, 1026
BspANI	GGCC	5 cut(s)	5, 118, 150, 347, 741
BspCNI	CTCAG	6 cut(s)	4, 316, 722, 754, 915, 1065
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	4 cut(s)	330, 776, 999, 1036
BspPI	GGATC	1 cut(s)	1034
BspQI	GCTCTTC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	774
BspTNI	GGTCTC	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	71, 821
BsrI	ACTGG	5 cut(s)	52, 133, 245, 311, 457
BssAI	RCCGGY	2 cut(s)	71, 821
BssECI	CCNNGG	4 cut(s)	86, 87, 342, 925
BssMI	GATC	3 cut(s)	258, 984, 1026
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	3 cut(s)	88, 416, 927
Bst4CI	ACNGT	3 cut(s)	183, 493, 1019
Bst6I	CTCTTC	2 cut(s)	297, 794
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	3 cut(s)	396, 654, 823
BstDEI	CTNAG	7 cut(s)	12, 324, 709, 762, 902, 1052, 1080
BstF5I	GGATG	7 cut(s)	163, 250, 411, 528, 797, 948, 1106
BstKTI	GATC	3 cut(s)	261, 987, 1029
BstMAI	GTCTC	3 cut(s)	374, 683, 827
BstMBI	GATC	3 cut(s)	258, 984, 1026
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
BstNI	CCWGG	3 cut(s)	88, 416, 927
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	3 cut(s)	86, 414, 925
BstSLI	GKGCMC	1 cut(s)	779
BstV1I	GCAGC	4 cut(s)	273, 714, 805, 987
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	5 cut(s)	5, 118, 150, 347, 741
BtrI	CACGTC	1 cut(s)	554
BtsCI	GGATG	7 cut(s)	163, 250, 411, 528, 797, 948, 1106
BtsI	GCAGTG	2 cut(s)	612, 957
BtsIMutI	CAGTG	6 cut(s)	489, 585, 612, 910, 957, 1024
Cac8I	GCNNGC	3 cut(s)	396, 654, 823
CaiI	CAGNNNCTG	1 cut(s)	1023
CciI	TCATGA	1 cut(s)	829
Cfr10I	RCCGGY	2 cut(s)	71, 821
Cfr13I	GGNCC	4 cut(s)	148, 541, 1035, 1103
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	4 cut(s)	447, 598, 1015, 1056
CspCI	CAANNNNNGTGG	2 cut(s)	1052, 1087
CviAII	CATG	7 cut(s)	136, 224, 250, 601, 640, 830, 979
CviQI	GTAC	4 cut(s)	447, 598, 1015, 1056
DdeI	CTNAG	7 cut(s)	12, 324, 709, 762, 902, 1052, 1080
DpnI	GATC	3 cut(s)	260, 986, 1028
DpnII	GATC	3 cut(s)	258, 984, 1026
DraIII	CACNNNGTG	1 cut(s)	493
DrdI	GACNNNNNNGTC	1 cut(s)	743
DseDI	GACNNNNNNGTC	1 cut(s)	743
EaeI	YGGCCR	3 cut(s)	3, 116, 739
Eam1104I	CTCTTC	2 cut(s)	297, 794
EarI	CTCTTC	2 cut(s)	297, 794
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	871
Eco47I	GGWCC	3 cut(s)	541, 1035, 1103
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	3 cut(s)	86, 414, 925
EcoRV	GATATC	1 cut(s)	871
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	7 cut(s)	139, 227, 253, 604, 643, 833, 982
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	7 cut(s)	135, 223, 249, 600, 639, 829, 978
FauNDI	CATATG	1 cut(s)	658
Fnu4HI	GCNGC	4 cut(s)	287, 703, 819, 976
FokI	GGATG	7 cut(s)	170, 257, 398, 515, 784, 955, 1093
Fsp4HI	GCNGC	4 cut(s)	287, 703, 819, 976
FspBI	CTAG	2 cut(s)	102, 438
GluI	GCNGC	4 cut(s)	287, 703, 819, 976
HaeIII	GGCC	5 cut(s)	5, 118, 150, 347, 741
HapII	CCGG	2 cut(s)	72, 822
HgaI	GACGC	1 cut(s)	373
Hin1II	CATG	7 cut(s)	139, 227, 253, 604, 643, 833, 982
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	5 cut(s)	467, 484, 580, 768, 1097
HpaII	CCGG	2 cut(s)	72, 822
HphI	GGTGA	5 cut(s)	67, 86, 182, 485, 598
Hpy166II	GTNNAC	2 cut(s)	606, 1117
Hpy188I	TCNGA	4 cut(s)	809, 875, 1031, 1133
Hpy188III	TCNNGA	5 cut(s)	299, 539, 734, 830, 1024
Hpy8I	GTNNAC	2 cut(s)	606, 1117
HpyAV	CCTTC	7 cut(s)	52, 148, 394, 500, 542, 637, 1069
HpyCH4III	ACNGT	3 cut(s)	183, 493, 1019
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	2 cut(s)	656, 935
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
HpyF3I	CTNAG	7 cut(s)	12, 324, 709, 762, 902, 1052, 1080
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	7 cut(s)	139, 227, 253, 604, 643, 833, 982
KroI	GCCGGC	1 cut(s)	821
KroNI	GCCGGC	1 cut(s)	823
Kzo9I	GATC	3 cut(s)	258, 984, 1026
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	7 cut(s)	88, 301, 334, 710, 758, 973, 1003
Lsp1109I	GCAGC	4 cut(s)	273, 714, 805, 987
LweI	GCATC	4 cut(s)	70, 148, 274, 556
MaeI	CTAG	2 cut(s)	102, 438
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	4 cut(s)	35, 485, 554, 635
MalI	GATC	3 cut(s)	260, 986, 1028
MboI	GATC	3 cut(s)	258, 984, 1026
MboII	GAAGA	7 cut(s)	268, 308, 314, 589, 730, 781, 994
MfeI	CAATTG	1 cut(s)	753
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	3 cut(s)	309, 779, 903
MluCI	AATT	2 cut(s)	627, 753
MlyI	GAGTC	3 cut(s)	461, 493, 1106
MmeI	TCCRAC	2 cut(s)	817, 1087
MroNI	GCCGGC	1 cut(s)	821
MroXI	GAANNNNTTC	1 cut(s)	1127
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	129, 809
MspI	CCGG	2 cut(s)	72, 822
MspR9I	CCNGG	3 cut(s)	88, 416, 927
MunI	CAATTG	1 cut(s)	753
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	3 cut(s)	88, 416, 927
MwoI	GCNNNNNNNGC	4 cut(s)	68, 89, 416, 662
NaeI	GCCGGC	1 cut(s)	823
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	3 cut(s)	258, 984, 1026
NgoMIV	GCCGGC	1 cut(s)	821
NlaIII	CATG	7 cut(s)	139, 227, 253, 604, 643, 833, 982
NlaIV	GGNNCC	4 cut(s)	330, 776, 999, 1036
NmuCI	GTSAC	4 cut(s)	35, 485, 554, 635
NspI	RCATGY	1 cut(s)	604
PagI	TCATGA	1 cut(s)	829
PasI	CCCWGGG	1 cut(s)	87
PciI	ACATGT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	297
PctI	GAATGC	1 cut(s)	825
PdiI	GCCGGC	1 cut(s)	823
PdmI	GAANNNNTTC	1 cut(s)	1127
PfeI	GAWTC	2 cut(s)	580, 768
PkrI	GCNGC	4 cut(s)	288, 704, 820, 977
PleI	GAGTC	3 cut(s)	461, 492, 1105
PpsI	GAGTC	3 cut(s)	461, 492, 1105
PscI	ACATGT	1 cut(s)	600
Psp6I	CCWGG	3 cut(s)	86, 414, 925
PspGI	CCWGG	3 cut(s)	86, 414, 925
PspN4I	GGNNCC	4 cut(s)	330, 776, 999, 1036
PspPI	GGNCC	4 cut(s)	148, 541, 1035, 1103
PstNI	CAGNNNCTG	1 cut(s)	1023
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	4 cut(s)	448, 599, 1016, 1057
RsaNI	GTAC	4 cut(s)	447, 598, 1015, 1056
RseI	CAYNNNNRTG	2 cut(s)	129, 809
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	4 cut(s)	287, 703, 819, 976
Sau3AI	GATC	3 cut(s)	258, 984, 1026
Sau96I	GGNCC	4 cut(s)	148, 541, 1035, 1103
SchI	GAGTC	3 cut(s)	461, 493, 1106
ScrFI	CCNGG	3 cut(s)	88, 416, 927
SduI	GDGCHC	3 cut(s)	309, 779, 903
SfaNI	GCATC	4 cut(s)	70, 148, 274, 556
SinI	GGWCC	3 cut(s)	541, 1035, 1103
SmiMI	CAYNNNNRTG	2 cut(s)	129, 809
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
Sse9I	AATT	2 cut(s)	627, 753
SspMI	CTAG	2 cut(s)	102, 438
StyD4I	CCNGG	3 cut(s)	86, 414, 925
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	183, 493, 1019
TaiI	ACGT	1 cut(s)	556
TasI	AATT	2 cut(s)	627, 753
TatI	WGTACW	1 cut(s)	1014
TfiI	GAWTC	2 cut(s)	580, 768
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	6 cut(s)	496, 592, 619, 910, 964, 1024
TseFI	GTSAC	4 cut(s)	35, 485, 554, 635
TseI	GCWGC	4 cut(s)	286, 702, 818, 975
Tsp45I	GTSAC	4 cut(s)	35, 485, 554, 635
TspDTI	ATGAA	7 cut(s)	189, 590, 656, 690, 818, 869, 995
TspGWI	ACGGA	1 cut(s)	623
TspRI	CASTG	6 cut(s)	496, 592, 619, 910, 964, 1024
VpaK11BI	GGWCC	3 cut(s)	541, 1035, 1103
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	1127
XspI	CTAG	2 cut(s)	102, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.