Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004491

Physical Location & Seq

Genomic Coordinates Forward (+)

12773198 .. 12775784

Gene Structure 2587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022825

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCCCTTCCCTCAGGACCGCCTGGACCTCCCTCTCGACGCCCTCATCGCCGAATCCAAACAACAACGCCGTCACAACAGCCACGCTCACCAGCCACGAGGGCATAACGGTCATTTCGGTGGCGGAGGCTCCACCTCAGGCCCCTCTCGTCGGCCGATGAACCGCAACGCCTACAGAACGGCGCCGTATCCCACTCTGCCGGAAATGCAAGGACAGCCTGGACCCAGAAGGATTGAGCTGCCATTGGCTTTGAGCCAAGCGATGAACAGTGAGGGAAGCACCAAGCTTTATATATCTAACTTGGACTATGATGTTACCAATCGAGATATAGAGGAGTTTTACCAGACGACCCTCTATCCCCTGTTTCAAAAGAAATGGTGTCTTGCTTTTGATATGGTCACTGGAACAGCTGAAGTTGTCTATAAGCACTATTTAGATGCTCTAGCAGCAATCGAGAGATACAACAATCAGCATCTTGATGGAAAGAAAGTGGAAATTAAGCTTGTGGGACTCAATGTTGTTTCTCCTGTTCCTCTGCTTCTGCCTCCAAATACAAATTTCATGCAAGAACATCCAACTCCCGTCTTCCAGAGGCTAGGAAGAGCTGGTTCAAGGGGATCGTTTCATGGTCATGGTGGTGTTGGACTTGAAAGAGGCTGTGGACAGGTGAGAAATGGTGGTCCGAAGGTTACTACAGAATCTCAGCAATGGAAGAATGTGACTGCAGAAAATCAGCAAAGGAAGAATGTGATTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

253

Amino Acids

28.18

Weight (kDa)

9.46

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02530 AT5G02530
malus_domestica	MD07G1194100.v1.1
prunus_persica	Prupe.2G231500_v2.0.a1 Prupe.2G231500_v2.0.a1
pyrus_communis	pycom07g18290
rosa_chinensis	RchiOBHm_Chr1g0366271 RchiOBHm_Chr3g0492141
rosa_laevigata	RLG00000022825 RLG00000027356
rosa_multiflora	Rmu_sc0003736.1_g000006 Rmu_sc0011454.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290370
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0266100 Rorug02G0266200 Rorug02G0266700.1 Rorug02G0267400 Rorug02G0268700 Rorug02G0268700 Rorug02G0269500 Rorug02G0270000 Rorug03G0246700 Rorug03G0247400
rosa_samantha	Rh1AG336700 Rh1BG298200 Rh1DG329700 Rh3CG333100 Rh3DG335100
rosa_wichuraiana	Rw1G029840 Rw3G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AciI	CCGC	3 cut(s)	19, 123, 163
AclWI	GGATC	1 cut(s)	625
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	2 cut(s)	39, 182
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	368, 612, 650
AjnI	CCWGG	2 cut(s)	21, 217
AluBI	AGCT	5 cut(s)	238, 286, 410, 502, 605
AluI	AGCT	5 cut(s)	238, 286, 410, 502, 605
AlwI	GGATC	1 cut(s)	625
AoxI	GGCC	2 cut(s)	139, 152
ApeKI	GCWGC	2 cut(s)	238, 446
ApoI	RAATTY	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	5 cut(s)	16, 25, 140, 221, 680
AsuHPI	GGTGA	2 cut(s)	80, 679
AvaII	GGWCC	4 cut(s)	16, 25, 221, 680
AxyI	CCTNAGG	2 cut(s)	12, 136
BanI	GGYRCC	1 cut(s)	181
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	577
BbvI	GCAGC	2 cut(s)	225, 458
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	3 cut(s)	54, 169, 195
BciT130I	CCWGG	2 cut(s)	23, 219
BciVI	GTATCC	1 cut(s)	198
BfaI	CTAG	2 cut(s)	443, 596
BfmI	CTRYAG	3 cut(s)	172, 693, 723
BfoI	RGCGCY	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	198
BglI	GCCNNNNNGGC	1 cut(s)	100
BisI	GCNGC	2 cut(s)	239, 447
BlsI	GCNGC	2 cut(s)	240, 448
Bme1390I	CCNGG	2 cut(s)	23, 219
Bme18I	GGWCC	4 cut(s)	16, 25, 221, 680
BmgT120I	GGNCC	5 cut(s)	16, 25, 140, 221, 680
BmiI	GGNNCC	4 cut(s)	130, 142, 183, 223
BmrFI	CCNGG	2 cut(s)	23, 219
BmsI	GCATC	2 cut(s)	427, 481
BpiI	GAAGAC	1 cut(s)	577
BsaHI	GRCGYC	2 cut(s)	39, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	406
Bse21I	CCTNAGG	2 cut(s)	12, 136
Bse3DI	GCAATG	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	23, 219
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	713
BseMII	CTCAG	3 cut(s)	26, 150, 716
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	347
BseX3I	CGGCCG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	225, 458
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	141, 154
BshNI	GGYRCC	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	2 cut(s)	141, 154
Bsp143I	GATC	1 cut(s)	617
BspACI	CCGC	3 cut(s)	19, 123, 163
BspANI	GGCC	2 cut(s)	141, 154
BspCNI	CTCAG	3 cut(s)	25, 149, 715
BspLI	GGNNCC	4 cut(s)	130, 142, 183, 223
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	1 cut(s)	625
BspQI	GCTCTTC	1 cut(s)	595
BspT107I	GGYRCC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	713
BsrI	ACTGG	1 cut(s)	406
BssMI	GATC	1 cut(s)	617
BssNI	GRCGYC	2 cut(s)	39, 182
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	23, 219
Bst4CI	ACNGT	2 cut(s)	110, 269
Bst6I	CTCTTC	1 cut(s)	595
BstACI	GRCGYC	2 cut(s)	39, 182
BstDEI	CTNAG	3 cut(s)	12, 136, 702
BstF5I	GGATG	1 cut(s)	571
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	1 cut(s)	620
BstMBI	GATC	1 cut(s)	617
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 100, 205, 214, 446
BstNI	CCWGG	2 cut(s)	23, 219
BstSCI	CCNGG	2 cut(s)	21, 217
BstSFI	CTRYAG	3 cut(s)	172, 693, 723
BstV1I	GCAGC	2 cut(s)	225, 458
BstV2I	GAAGAC	1 cut(s)	577
BstZI	CGGCCG	1 cut(s)	152
Bsu36I	CCTNAGG	2 cut(s)	12, 136
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	141, 154
BtgZI	GCGATG	2 cut(s)	31, 275
BtsCI	GGATG	1 cut(s)	571
BtsIMutI	CAGTG	2 cut(s)	274, 399
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	5 cut(s)	16, 25, 140, 221, 680
CseI	GACGC	1 cut(s)	47
CviAII	CATG	3 cut(s)	562, 626, 632
DdeI	CTNAG	3 cut(s)	12, 136, 702
DinI	GGCGCC	1 cut(s)	183
DpnI	GATC	1 cut(s)	619
DpnII	GATC	1 cut(s)	617
EaeI	YGGCCR	1 cut(s)	152
EagI	CGGCCG	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
EciI	GGCGGA	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	152
Eco47I	GGWCC	4 cut(s)	16, 25, 221, 680
Eco52I	CGGCCG	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	432
Eco81I	CCTNAGG	2 cut(s)	12, 136
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	21, 217
EgeI	GGCGCC	1 cut(s)	183
EheI	GGCGCC	1 cut(s)	183
FaeI	CATG	3 cut(s)	565, 629, 635
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	3 cut(s)	561, 625, 631
Fnu4HI	GCNGC	2 cut(s)	239, 447
FokI	GGATG	1 cut(s)	558
Fsp4HI	GCNGC	2 cut(s)	239, 447
FspBI	CTAG	2 cut(s)	443, 596
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	2 cut(s)	239, 447
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	141, 154
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	2 cut(s)	39, 182
Hin1II	CATG	3 cut(s)	565, 629, 635
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HindIII	AAGCTT	2 cut(s)	284, 500
HinfI	GANTC	3 cut(s)	53, 510, 698
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	80, 679
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	1 cut(s)	684
Hpy188III	TCNNGA	6 cut(s)	14, 35, 323, 454, 476, 589
Hpy8I	GTNNAC	1 cut(s)	662
Hpy99I	CGWCG	2 cut(s)	41, 153
HpyAV	CCTTC	3 cut(s)	16, 222, 679
HpyCH4III	ACNGT	2 cut(s)	110, 269
HpyCH4V	TGCA	3 cut(s)	208, 565, 725
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 100, 205, 214, 446
HpyF3I	CTNAG	3 cut(s)	12, 136, 702
Hsp92I	GRCGYC	2 cut(s)	39, 182
Hsp92II	CATG	3 cut(s)	565, 629, 635
HspAI	GCGC	1 cut(s)	182
KasI	GGCGCC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	617
LguI	GCTCTTC	1 cut(s)	595
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	2 cut(s)	225, 458
LweI	GCATC	2 cut(s)	427, 481
MaeI	CTAG	2 cut(s)	443, 596
MaeIII	GTNAC	5 cut(s)	71, 313, 397, 688, 718
MalI	GATC	1 cut(s)	619
MboI	GATC	1 cut(s)	617
MboII	GAAGA	4 cut(s)	577, 612, 724, 754
MluCI	AATT	2 cut(s)	495, 556
Mly113I	GGCGCC	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	504
MmeI	TCCRAC	2 cut(s)	599, 622
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	4 cut(s)	117, 477, 630, 636
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	23, 219
MvaI	CCWGG	2 cut(s)	23, 219
MwoI	GCNNNNNNNGC	5 cut(s)	47, 100, 205, 214, 446
NarI	GGCGCC	1 cut(s)	182
NdeII	GATC	1 cut(s)	617
NlaIII	CATG	3 cut(s)	565, 629, 635
NlaIV	GGNNCC	4 cut(s)	130, 142, 183, 223
NmuCI	GTSAC	3 cut(s)	71, 397, 718
PciSI	GCTCTTC	1 cut(s)	595
PfeI	GAWTC	2 cut(s)	53, 698
PkrI	GCNGC	2 cut(s)	240, 448
PleI	GAGTC	1 cut(s)	504
PluTI	GGCGCC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	21, 217
PspGI	CCWGG	2 cut(s)	21, 217
PspN4I	GGNNCC	4 cut(s)	130, 142, 183, 223
PspPI	GGNCC	5 cut(s)	16, 25, 140, 221, 680
PstI	CTGCAG	1 cut(s)	727
PvuII	CAGCTG	1 cut(s)	410
RseI	CAYNNNNRTG	4 cut(s)	117, 477, 630, 636
SapI	GCTCTTC	1 cut(s)	595
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	2 cut(s)	239, 447
Sau3AI	GATC	1 cut(s)	617
Sau96I	GGNCC	5 cut(s)	16, 25, 140, 221, 680
SchI	GAGTC	1 cut(s)	504
ScrFI	CCNGG	2 cut(s)	23, 219
SetI	ASST	9 cut(s)	30, 137, 240, 288, 412, 504, 607, 669, 690
SfaNI	GCATC	2 cut(s)	427, 481
SfcI	CTRYAG	3 cut(s)	172, 693, 723
SfoI	GGCGCC	1 cut(s)	183
SinI	GGWCC	4 cut(s)	16, 25, 221, 680
SmiMI	CAYNNNNRTG	4 cut(s)	117, 477, 630, 636
Sse9I	AATT	2 cut(s)	495, 556
SsiI	CCGC	3 cut(s)	19, 123, 163
SspDI	GGCGCC	1 cut(s)	181
SspMI	CTAG	2 cut(s)	443, 596
StyD4I	CCNGG	2 cut(s)	21, 217
TaaI	ACNGT	2 cut(s)	110, 269
TaqI	TCGA	3 cut(s)	36, 322, 453
TasI	AATT	2 cut(s)	495, 556
TfiI	GAWTC	2 cut(s)	53, 698
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	274, 406
TseFI	GTSAC	3 cut(s)	71, 397, 718
TseI	GCWGC	2 cut(s)	238, 446
Tsp45I	GTSAC	3 cut(s)	71, 397, 718
TspDTI	ATGAA	4 cut(s)	173, 278, 550, 614
TspRI	CASTG	2 cut(s)	274, 406
VpaK11BI	GGWCC	4 cut(s)	16, 25, 221, 680
XapI	RAATTY	1 cut(s)	556
XspI	CTAG	2 cut(s)	443, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.