Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004491

Physical Location & Seq

Genomic Coordinates Forward (+)

25553306 .. 25555980

Gene Structure 2675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G231500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCCCCGGGGTCTGGACATGTCACTTGACGAGCTCATTGCGAAAAGGAAGAAACCCGGAGGGTATCATGGTTATTTCAGAGGCCGAGGCCGTGGCCGTGGCCGTGGCTACGGCCCAGGCCCAACTCGTCGGCTCATGAACCGCAACACCGTCAGAACGGCGCCGTACTCTGCTCAACCGATTATGCAAGTGGTGAGAACAACCGTTGAGCAAGAAATGGAAGTGAGCGGAGGCACAGACACAGAGGAGGGCACCAAATTATACTTATCTAACTTAGACTATGATGTTTCTAACAGCGATATTGAGTTGCTCTTCTCTGAGATTGGTCACGTGAAACGACATACAGTCCATTATGATAGGAGCGGAAGATCAAAGGGAACAGCGGAAGTCATCTTTGTACACCATTCAGATGCTCTTGCAGCAATTGAGAAATACAACAATGTTCAGCTTGATGGAAAGCCATTGAAAATTGAGCTTGTAGGAGTGAATCCCGTTGCTCCTATTTCTGTGCCTCCAAGTACAAGAAGCATTCCGGGAAATCCAAACTTTGTCTTCCAATGTAGCCGAGGAAGAGCTGGTGCTAGGGGATTGTTTCATGGCCGTGGTGCTGGTGGGTTTCGACTTGCAAGGGGCGGTGGACAGGTGAAGAAGCCTAGTGGGAAGGTGAAGAAGCCTCGTGAGAAGGTGACTGCAGAAGATCTGGACGCCGACTTGGAGAACTACCGCCTAAAAGCTATGCAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

249

Amino Acids

27.26

Weight (kDa)

9.96

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02530 AT5G02530
malus_domestica	MD07G1194100.v1.1
prunus_persica	Prupe.2G231500_v2.0.a1 Prupe.2G231500_v2.0.a1
pyrus_communis	pycom07g18290
rosa_chinensis	RchiOBHm_Chr1g0366271 RchiOBHm_Chr3g0492141
rosa_laevigata	RLG00000022825 RLG00000027356
rosa_multiflora	Rmu_sc0003736.1_g000006 Rmu_sc0011454.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290370
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0266100 Rorug02G0266200 Rorug02G0266700.1 Rorug02G0267400 Rorug02G0268700 Rorug02G0268700 Rorug02G0269500 Rorug02G0270000 Rorug03G0246700 Rorug03G0247400
rosa_samantha	Rh1AG336700 Rh1BG298200 Rh1DG329700 Rh3CG333100 Rh3DG335100
rosa_wichuraiana	Rw1G029840 Rw3G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	160, 251
AccBSI	CCGCTC	2 cut(s)	228, 363
AciI	CCGC	6 cut(s)	142, 228, 363, 383, 633, 724
AcoI	YGGCCR	3 cut(s)	94, 100, 598
AcvI	CACGTG	1 cut(s)	331
AcyI	GRCGYC	2 cut(s)	161, 705
AfaI	GTAC	3 cut(s)	167, 399, 520
AfiI	CCNNNNNNNGG	1 cut(s)	13
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	466
AhdI	GACNNNNNGTC	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	5 cut(s)	34, 448, 475, 575, 734
AluI	AGCT	5 cut(s)	34, 448, 475, 575, 734
Alw21I	GWGCWC	1 cut(s)	36
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	7 cut(s)	82, 88, 94, 100, 112, 118, 598
ApeKI	GCWGC	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	113, 119
AsuC2I	CCSGG	4 cut(s)	7, 8, 57, 534
AsuHPI	GGTGA	4 cut(s)	205, 655, 676, 697
AvaI	CYCGRG	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	254
BanI	GGYRCC	2 cut(s)	160, 251
BanII	GRGCYC	1 cut(s)	36
BauI	CACGAG	1 cut(s)	675
BbrPI	CACGTG	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	544
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	7 cut(s)	75, 81, 87, 127, 148, 174, 585
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	117
BcnI	CCSGG	4 cut(s)	7, 8, 57, 534
BfaI	CTAG	2 cut(s)	582, 654
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	164
BglII	AGATCT	1 cut(s)	697
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
Bme1390I	CCNGG	5 cut(s)	7, 8, 57, 117, 534
BmeRI	GACNNNNNGTC	1 cut(s)	344
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	113, 119
BmiI	GGNNCC	2 cut(s)	162, 253
BmrFI	CCNGG	5 cut(s)	7, 8, 57, 117, 534
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	544
BpuMI	CCSGG	4 cut(s)	7, 8, 57, 534
BsaAI	YACGTR	1 cut(s)	331
BsaHI	GRCGYC	2 cut(s)	161, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	431
BshFI	GGCC	7 cut(s)	84, 90, 96, 102, 114, 120, 600
BshNI	GGYRCC	2 cut(s)	160, 251
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	3 cut(s)	7, 57, 533
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	7 cut(s)	84, 90, 96, 102, 114, 120, 600
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	36, 254
Bsp1407I	TGTACA	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	368, 697
BspACI	CCGC	6 cut(s)	142, 228, 363, 383, 633, 724
BspANI	GGCC	7 cut(s)	84, 90, 96, 102, 114, 120, 600
BspCNI	CTCAG	1 cut(s)	310
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	162, 253
BspMAI	CTGCAG	1 cut(s)	694
BspQI	GCTCTTC	2 cut(s)	317, 565
BspT107I	GGYRCC	2 cut(s)	160, 251
BsrBI	CCGCTC	2 cut(s)	228, 363
BsrDI	GCAATG	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	397
BssMI	GATC	2 cut(s)	368, 697
BssNI	GRCGYC	2 cut(s)	161, 705
BssSI	CACGAG	1 cut(s)	675
Bst2BI	CACGAG	1 cut(s)	675
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	3 cut(s)	151, 205, 346
Bst6I	CTCTTC	2 cut(s)	317, 565
BstACI	GRCGYC	2 cut(s)	161, 705
BstAUI	TGTACA	1 cut(s)	397
BstBAI	YACGTR	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	274, 318
BstDSI	CCRYGG	4 cut(s)	91, 97, 103, 601
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	371, 700
BstMBI	GATC	2 cut(s)	368, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	5 cut(s)	5, 6, 55, 115, 532
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	431
BstV2I	GAAGAC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
BsuRI	GGCC	7 cut(s)	84, 90, 96, 102, 114, 120, 600
BtgI	CCRYGG	4 cut(s)	91, 97, 103, 601
CciI	TCATGA	1 cut(s)	135
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	113, 119
Cfr9I	CCCGGG	1 cut(s)	6
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	3 cut(s)	166, 398, 519
CviAII	CATG	4 cut(s)	19, 68, 136, 596
CviQI	GTAC	3 cut(s)	166, 398, 519
DdeI	CTNAG	2 cut(s)	274, 318
DinI	GGCGCC	1 cut(s)	162
DpnI	GATC	2 cut(s)	370, 699
DpnII	GATC	2 cut(s)	368, 697
DriI	GACNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	3 cut(s)	94, 100, 598
Eam1104I	CTCTTC	2 cut(s)	317, 565
Eam1105I	GACNNNNNGTC	1 cut(s)	344
EarI	CTCTTC	2 cut(s)	317, 565
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	34
Eco72I	CACGTG	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	162
EheI	GGCGCC	1 cut(s)	162
FaeI	CATG	4 cut(s)	22, 71, 139, 599
FatI	CATG	4 cut(s)	18, 67, 135, 595
Fnu4HI	GCNGC	1 cut(s)	420
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	2 cut(s)	582, 654
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	7 cut(s)	84, 90, 96, 102, 114, 120, 600
HapII	CCGG	3 cut(s)	7, 57, 533
HgaI	GACGC	1 cut(s)	713
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	2 cut(s)	161, 705
Hin1II	CATG	4 cut(s)	22, 71, 139, 599
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	487
HpaII	CCGG	3 cut(s)	7, 57, 533
HphI	GGTGA	4 cut(s)	205, 655, 676, 697
Hpy166II	GTNNAC	2 cut(s)	400, 638
Hpy188I	TCNGA	4 cut(s)	80, 155, 319, 409
Hpy188III	TCNNGA	4 cut(s)	14, 136, 677, 701
Hpy8I	GTNNAC	2 cut(s)	400, 638
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	655, 676
HpyCH4III	ACNGT	3 cut(s)	151, 205, 346
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	5 cut(s)	187, 419, 626, 692, 739
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	2 cut(s)	274, 318
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	2 cut(s)	161, 705
Hsp92II	CATG	4 cut(s)	22, 71, 139, 599
HspAI	GCGC	1 cut(s)	161
KasI	GGCGCC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	368, 697
LguI	GCTCTTC	2 cut(s)	317, 565
LmnI	GCTCC	2 cut(s)	360, 502
LpnPI	CCDG	9 cut(s)	20, 70, 102, 129, 546, 561, 594, 626, 686
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	582, 654
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	3 cut(s)	21, 326, 685
MalI	GATC	2 cut(s)	370, 699
MbiI	CCGCTC	2 cut(s)	228, 363
MboI	GATC	2 cut(s)	368, 697
MboII	GAAGA	8 cut(s)	61, 304, 378, 544, 582, 658, 679, 707
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	2 cut(s)	36, 254
MluCI	AATT	3 cut(s)	257, 423, 468
Mly113I	GGCGCC	1 cut(s)	161
MnlI	CCTC	9 cut(s)	53, 74, 80, 224, 238, 241, 522, 560, 684
MslI	CAYNNNNRTG	2 cut(s)	408, 600
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	3 cut(s)	7, 57, 533
MspR9I	CCNGG	5 cut(s)	7, 8, 57, 117, 534
MunI	CAATTG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	419
NarI	GGCGCC	1 cut(s)	161
NciI	CCSGG	4 cut(s)	7, 8, 57, 534
NdeII	GATC	2 cut(s)	368, 697
NlaIII	CATG	4 cut(s)	22, 71, 139, 599
NlaIV	GGNNCC	2 cut(s)	162, 253
NmeAIII	GCCGAG	2 cut(s)	110, 590
NmuCI	GTSAC	3 cut(s)	21, 326, 685
NspI	RCATGY	1 cut(s)	22
PagI	TCATGA	1 cut(s)	135
PciI	ACATGT	1 cut(s)	18
PciSI	GCTCTTC	2 cut(s)	317, 565
PctI	GAATGC	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	487
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	1 cut(s)	421
PluTI	GGCGCC	1 cut(s)	164
PmaCI	CACGTG	1 cut(s)	331
PmlI	CACGTG	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	331
PscI	ACATGT	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	115
PspCI	CACGTG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	162, 253
PspPI	GGNCC	2 cut(s)	113, 119
PstI	CTGCAG	1 cut(s)	694
PsuI	RGATCY	1 cut(s)	697
RsaI	GTAC	3 cut(s)	167, 399, 520
RsaNI	GTAC	3 cut(s)	166, 398, 519
RseI	CAYNNNNRTG	2 cut(s)	408, 600
SacI	GAGCTC	1 cut(s)	36
SapI	GCTCTTC	2 cut(s)	317, 565
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	2 cut(s)	368, 697
Sau96I	GGNCC	2 cut(s)	113, 119
ScrFI	CCNGG	5 cut(s)	7, 8, 57, 117, 534
SduI	GDGCHC	2 cut(s)	36, 254
SetI	ASST	9 cut(s)	36, 333, 450, 477, 577, 645, 666, 687, 736
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	690
SfoI	GGCGCC	1 cut(s)	162
SmaI	CCCGGG	1 cut(s)	8
SmiMI	CAYNNNNRTG	2 cut(s)	408, 600
Sse9I	AATT	3 cut(s)	257, 423, 468
SsiI	CCGC	6 cut(s)	142, 228, 363, 383, 633, 724
SspDI	GGCGCC	1 cut(s)	160
SspMI	CTAG	2 cut(s)	582, 654
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	5 cut(s)	5, 6, 55, 115, 532
TaaI	ACNGT	3 cut(s)	151, 205, 346
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	619
TasI	AATT	3 cut(s)	257, 423, 468
TatI	WGTACW	2 cut(s)	397, 518
TfiI	GAWTC	1 cut(s)	487
TseFI	GTSAC	3 cut(s)	21, 326, 685
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	3 cut(s)	21, 326, 685
TspDTI	ATGAA	2 cut(s)	152, 584
TspMI	CCCGGG	1 cut(s)	6
XceI	RCATGY	1 cut(s)	22
XmaI	CCCGGG	1 cut(s)	6
XspI	CTAG	2 cut(s)	582, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.