Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004491

Physical Location & Seq

Genomic Coordinates Reverse (-)

10900215 .. 10905701

Gene Structure 5487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCCCTTCCCACAGGACCGCCTGGACCTCCCTCTCGACGCCCTCATCGCCGAATCCAAGCAACAACGCCGTCAAAACAGCCACGCTCACCAGCCACGAGGGCATAACGGTCATTTCGGCTGCAGAGGCCGTGGAGGCTCCACCTCAGGCCCTGCTCGTCGGCCGATGAACCGCAACGCCTACAGAACGGCGCCGTATCCCACTCTGCCGGAAATGCAAGGACAGCCTGGACCCAGAAGGCTTGAGATGCCATTGTCTTTGAGCCAAGCGATGAACAGAGAGGAAACGTCGAAACTATTGAAGGAACTCGCTAAAGAGAGGGAGAACATTATTCATGGAAGTGAAAGAAATGTGATGACCGATGAGTGGAACAGGCTAGGAAGATCTGGTTCAAGGGGATCATTTCATGGTCATGGTGGTGTTGGACTTGAAAGAGGCCGTGGACAGGTGAGAAATGGTGGTCCGAAGGTTACTACAGAATCTCGGCAATGGAAGAATGTGACTGCAGAAAATCAGCGAAGGAAGAATGTGATTACGAATCCGTTAAAAGGAAGAAAACTTTTATGGAGATACAACCGTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

22.2

Weight (kDa)

11.31

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02530 AT5G02530
malus_domestica	MD07G1194100.v1.1
prunus_persica	Prupe.2G231500_v2.0.a1 Prupe.2G231500_v2.0.a1
pyrus_communis	pycom07g18290
rosa_chinensis	RchiOBHm_Chr1g0366271 RchiOBHm_Chr3g0492141
rosa_laevigata	RLG00000022825 RLG00000027356
rosa_multiflora	Rmu_sc0003736.1_g000006 Rmu_sc0011454.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290370
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0266100 Rorug02G0266200 Rorug02G0266700.1 Rorug02G0267400 Rorug02G0268700 Rorug02G0268700 Rorug02G0269500 Rorug02G0270000 Rorug03G0246700 Rorug03G0247400
rosa_samantha	Rh1AG336700 Rh1BG298200 Rh1DG329700 Rh3CG333100 Rh3DG335100
rosa_wichuraiana	Rw1G029840 Rw3G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AciI	CCGC	2 cut(s)	19, 172
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	161
AcyI	GRCGYC	2 cut(s)	39, 191
AfiI	CCNNNNNNNGG	3 cut(s)	366, 445, 548
AgsI	TTSAA	3 cut(s)	301, 393, 431
AjnI	CCWGG	2 cut(s)	21, 226
AlwI	GGATC	1 cut(s)	406
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	4 cut(s)	127, 148, 161, 436
ApeKI	GCWGC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	5 cut(s)	16, 25, 149, 230, 461
AsuHPI	GGTGA	2 cut(s)	80, 460
AvaII	GGWCC	4 cut(s)	16, 25, 230, 461
AxyI	CCTNAGG	1 cut(s)	145
BaeI	ACNNNNGTAYC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	190
BauI	CACGAG	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	107
BceAI	ACGGC	5 cut(s)	54, 114, 178, 204, 423
BciT130I	CCWGG	2 cut(s)	23, 228
BciVI	GTATCC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	4 cut(s)	121, 181, 474, 504
BfoI	RGCGCY	1 cut(s)	194
BfuI	GTATCC	1 cut(s)	207
BglI	GCCNNNNNGGC	2 cut(s)	100, 135
BglII	AGATCT	1 cut(s)	383
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	23, 228
Bme18I	GGWCC	4 cut(s)	16, 25, 230, 461
BmgT120I	GGNCC	5 cut(s)	16, 25, 149, 230, 461
BmiI	GGNNCC	3 cut(s)	139, 192, 232
BmrFI	CCNGG	2 cut(s)	23, 228
BmsI	GCATC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	263
BsaHI	GRCGYC	2 cut(s)	39, 191
BsaJI	CCNNGG	2 cut(s)	130, 439
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 445, 548
Bse21I	CCTNAGG	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	494
BseBI	CCWGG	2 cut(s)	23, 228
BseDI	CCNNGG	2 cut(s)	130, 439
BseLI	CCNNNNNNNGG	3 cut(s)	366, 445, 548
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	1 cut(s)	159
BseX3I	CGGCCG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	4 cut(s)	129, 150, 163, 438
BshNI	GGYRCC	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	366, 445, 548
BsnI	GGCC	4 cut(s)	129, 150, 163, 438
Bsp143I	GATC	2 cut(s)	383, 398
BspACI	CCGC	2 cut(s)	19, 172
BspANI	GGCC	4 cut(s)	129, 150, 163, 438
BspCNI	CTCAG	1 cut(s)	158
BspLI	GGNNCC	3 cut(s)	139, 192, 232
BspMAI	CTGCAG	2 cut(s)	125, 508
BspPI	GGATC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	494
BssECI	CCNNGG	2 cut(s)	130, 439
BssMI	GATC	2 cut(s)	383, 398
BssNI	GRCGYC	2 cut(s)	39, 191
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	23, 228
Bst4CI	ACNGT	2 cut(s)	110, 578
BstACI	GRCGYC	2 cut(s)	39, 191
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	2 cut(s)	130, 439
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	2 cut(s)	386, 401
BstMBI	GATC	2 cut(s)	383, 398
BstMCI	CGRYCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 100, 126, 135, 214, 223, 247
BstNI	CCWGG	2 cut(s)	23, 228
BstSCI	CCNGG	2 cut(s)	21, 226
BstSFI	CTRYAG	4 cut(s)	121, 181, 474, 504
BstV1I	GCAGC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
BstZI	CGGCCG	1 cut(s)	161
Bsu36I	CCTNAGG	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	207
BsuRI	GGCC	4 cut(s)	129, 150, 163, 438
BtgI	CCRYGG	2 cut(s)	130, 439
BtgZI	GCGATG	2 cut(s)	31, 284
CaiI	CAGNNNCTG	1 cut(s)	152
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	5 cut(s)	16, 25, 149, 230, 461
CseI	GACGC	1 cut(s)	47
CviAII	CATG	3 cut(s)	335, 407, 413
DdeI	CTNAG	1 cut(s)	145
DinI	GGCGCC	1 cut(s)	192
DpnI	GATC	2 cut(s)	385, 400
DpnII	GATC	2 cut(s)	383, 398
EaeI	YGGCCR	1 cut(s)	161
EagI	CGGCCG	1 cut(s)	161
EclXI	CGGCCG	1 cut(s)	161
Eco47I	GGWCC	4 cut(s)	16, 25, 230, 461
Eco52I	CGGCCG	1 cut(s)	161
Eco81I	CCTNAGG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	21, 226
EgeI	GGCGCC	1 cut(s)	192
EheI	GGCGCC	1 cut(s)	192
FaeI	CATG	3 cut(s)	338, 410, 416
FaiI	YATR	5 cut(s)	105, 336, 408, 414, 565
FatI	CATG	3 cut(s)	334, 406, 412
Fnu4HI	GCNGC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	4 cut(s)	129, 150, 163, 438
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	193
Hin1I	GRCGYC	2 cut(s)	39, 191
Hin1II	CATG	3 cut(s)	338, 410, 416
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	3 cut(s)	53, 479, 538
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	80, 460
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	1 cut(s)	465
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	3 cut(s)	41, 162, 292
HpyAV	CCTTC	5 cut(s)	16, 231, 295, 460, 513
HpyCH4III	ACNGT	2 cut(s)	110, 578
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	3 cut(s)	123, 217, 506
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 100, 126, 135, 214, 223, 247
HpyF3I	CTNAG	1 cut(s)	145
HpySE526I	ACGT	1 cut(s)	287
Hsp92I	GRCGYC	2 cut(s)	39, 191
Hsp92II	CATG	3 cut(s)	338, 410, 416
HspAI	GCGC	1 cut(s)	191
KasI	GGCGCC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	383, 398
LmnI	GCTCC	1 cut(s)	143
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	3 cut(s)	469, 499, 578
MalI	GATC	2 cut(s)	385, 400
MboI	GATC	2 cut(s)	383, 398
MboII	GAAGA	4 cut(s)	393, 505, 535, 564
MflI	RGATCY	1 cut(s)	383
Mly113I	GGCGCC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	403
MseI	TTAA	1 cut(s)	545
MslI	CAYNNNNRTG	3 cut(s)	339, 411, 417
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	23, 228
MvaI	CCWGG	2 cut(s)	23, 228
MwoI	GCNNNNNNNGC	7 cut(s)	47, 100, 126, 135, 214, 223, 247
NarI	GGCGCC	1 cut(s)	191
NdeII	GATC	2 cut(s)	383, 398
NlaIII	CATG	3 cut(s)	338, 410, 416
NlaIV	GGNNCC	3 cut(s)	139, 192, 232
NmeAIII	GCCGAG	1 cut(s)	463
NmuCI	GTSAC	2 cut(s)	499, 578
PfeI	GAWTC	3 cut(s)	53, 479, 538
PkrI	GCNGC	1 cut(s)	122
PluTI	GGCGCC	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	21, 226
PspGI	CCWGG	2 cut(s)	21, 226
PspN4I	GGNNCC	3 cut(s)	139, 192, 232
PspPI	GGNCC	5 cut(s)	16, 25, 149, 230, 461
PstI	CTGCAG	2 cut(s)	125, 508
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	383
RseI	CAYNNNNRTG	3 cut(s)	339, 411, 417
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	383, 398
Sau96I	GGNCC	5 cut(s)	16, 25, 149, 230, 461
ScrFI	CCNGG	2 cut(s)	23, 228
SetI	ASST	5 cut(s)	30, 146, 290, 450, 471
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	4 cut(s)	121, 181, 474, 504
SfoI	GGCGCC	1 cut(s)	192
SinI	GGWCC	4 cut(s)	16, 25, 230, 461
SmiMI	CAYNNNNRTG	3 cut(s)	339, 411, 417
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SsiI	CCGC	2 cut(s)	19, 172
SspDI	GGCGCC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	21, 226
TaaI	ACNGT	2 cut(s)	110, 578
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	2 cut(s)	36, 290
TaqII	GACCGA	1 cut(s)	374
TfiI	GAWTC	3 cut(s)	53, 479, 538
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TseFI	GTSAC	2 cut(s)	499, 578
TseI	GCWGC	1 cut(s)	120
Tsp45I	GTSAC	2 cut(s)	499, 578
TspDTI	ATGAA	4 cut(s)	182, 287, 323, 395
TspGWI	ACGGA	1 cut(s)	531
VpaK11BI	GGWCC	4 cut(s)	16, 25, 230, 461
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.