Rorug02G0265200

THO complex subunit 4A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000403
Physical Location & Seq
Reverse (-)
28005083 .. 28010774
5692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0265200.1

Sequence Viewer

Length: 2226 bp
ATGGAGGCCTGCAACTGTATTGAGCCGCAGTGGCCGGCTGATGAGCTGCTGATGAAGTACCAGTACATTTCGGACTTCTTTATTGCACTTGCTTACTTCTCAATCCCTCTGGAGTTGATATACTTTGTCAAGAAATCCGCAGTGTTTCCATACAGATGGGTGCTTGTTCAGTTTGGTGCTTTCATCGTGTTGTGCGGCGCCACCCATCTTATTAACTTGTGGACTTTCAACATGCATTCTAGGACTGTGGCCGTAGTAATGACTACTGCCAAGGTTTTGACTGCTGTGGTTTCGTGCGCCACGGCGTTGATGCTTGTGCATATTATTCCTGATTTGTTGAGTGTTAAGACTAGGGAGTTGTTCCTGAAGAATAAGGCTGCAGAGCTTGATAGGGAAATGGGGCTGATTCGGACTCAGGAGGAGACCGGTCGACATGTCAGGATGCTGACACATGAGATTAGAAGTACTCTTGACAGACATACTATACTGAAAACCACACTTGTTGAGTTGGGTAGAACTTTGGCATTGGAAGAGTGTGCGTTGTGGATGCCCACGCGTACTGCGTTAGAGCTGCAACTGTCGTATACACTCCATCAGCAGAATCCGGTAGGACATACCGTACCCATTCATCTTCCTGTGATCAATCAAGTGTTTAGCAGCAACCATGCCGTGAAGATATCACCGAATTCCCCAGTGGCAAGACTGAGGCCACTTGCGGGAAAGCATATGCCTGGAGAGGTTGTTGCTGTTCGTGTCCCTCTCCTGCACCTCTCAAACTTCCAAATCAATGACTGGCCTGAGCTCTCAACAAAACGCTATGCTTTGATGGTGTTGATGCTCCCTTCTGATAGTGCAAGGCAATGGCATATGCATGAGTTAGAGCTGGTTGAGGTAGTTGCTGACCAGGTAGCAGTTGCTCTATCACACGCTGCTATCTTAGAAGAGTCGAGGAGAGCGAGGGATCTGCTAATGGAGCAGAATATTGCACTTGATCTGGCTAGGAGGGAAGCAGAAACTGCAATTCGTGCTCGCAATGATTTCTTGGCCGTTATGAACCATGAGATGAGAACTCCCATGCATGCAATTATTGCTCTGTCTTCCTTGCTGCAGGAAACTGAGCTGACACCGGAGCAGCGCCTAATGGTTGAAACAATATTAAAGAGCAGTAACCTTTTGGCTACCCTCATAAATGATGTATTAGATCTTTCAAGACTTGAAGATGGCAGCCTTCAACTTGACATAGCAACTTTTAACCTCCATTCTGTATTTATAGAGGTTCATAATTTAATTAAGCCTATTGCATCTGTTAAAAAGTTGTCGGTTACATTAAATTTAGCAGCAGACCTGCCAGTGTATGCAATAGGTGATGAAAAGCGCCTTATGCAAACTATTCTAAATGTTGTTGGGAATGCTGTGAAGTTTTCAAAAGAAGGGAGCATCTGGATTACAGTTTTTGTTGCGAAATCAGAATCTTTAAGAGATTTCCATGCTGCTGACTTTTTTCCTGTGCAAAGTGATAATCACTTTTATCTGCGTGTACAGGTAAAAGATTCAGGATCTGGAATCAATCCCCAGGATCTTCCGAAGCTATTCACCAAATTCGCACAGAATCAGTCATTAGCTACTAGAAATTCTGGTGGTAGTGGACTTGGTTTGGCCATCTGTAAGAGATTTGTAAATCTTATGGAGGGGCATATTTGGATTGAAAGTGAAGGTCTCAGCAAGGGATGCACTGCCAATTTCATTGTGAAGCTCGGCTATCCGGAGCGATCAAATGAGTCTAAGCTGCCTTTTCTGCCTAAGATGCAAGCAACTCATGGTCAAACAAACTTTCCAGGGTTGAAAGTTCTTGTCATGGATGATAATGGAGTCAGCAGATCAGTGACAAAGGGACTCCTTGAGCACCTGGGATGTGATGTAACAACCGTAAGCTCAACTGATGAGTTCTTGCAAGTTATTTCACAGGAGCACAAGGTGGTGTTCATGGATGTGTGCATGCCCGGCATAGATGGGTATGAACTAGCTGTCCAGATTCATGGAAAGTTTACAAAACGTCATGAACGTCCAGTATTAGTTGCACTTACTGGAAACATAAACAAGATGACAAAGGAGAGCTGCATGAGGGTTGGTATGGACGGGGTTATACTAAAACCTGTTTCAGTTGATAAAATGAGAAGTGTTTTATCTGAACTACTAGAGCATCGGGTTCTATTTGAGGCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168
Pfam Domains
Protein Families
FoP_duplication RRM_1

Protein Analysis

741

Amino Acids

83.09

Weight (kDa)

6.74

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ETR1_N PF25487 17 - 115 8.5e-40 Ethylene receptor 1-like, N-terminal domain
GAF PF01590 158 - 307 1.1e-11 GAF domain
HisKA PF00512 343 - 408 3.2e-19 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 455 - 584 8.5e-25 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Response_reg PF00072 616 - 727 6.2e-18 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18310 AT5G15870
fragaria_vesca FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1353
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 2 cut(s) 430, 584
AccII CGCG 1 cut(s) 556
AccIII TCCGGA 1 cut(s) 1762
AciI CCGC 4 cut(s) 26, 138, 195, 716
AclWI GGATC 3 cut(s) 969, 1564, 1584
AcoI YGGCCR 4 cut(s) 32, 249, 1044, 1656
AcsI RAATTY 4 cut(s) 685, 1330, 1598, 1630
AcuI CTGAAG 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 198
AdeI CACNNNGTG 1 cut(s) 1975
AfaI GTAC 6 cut(s) 59, 65, 466, 559, 621, 1539
AfiI CCNNNNNNNGG 1 cut(s) 716
AflIII ACRYGT 2 cut(s) 433, 554
AgeI ACCGGT 1 cut(s) 425
AgsI TTSAA 8 cut(s) 229, 1148, 1209, 1217, 1232, 1425, 1706, 1843
AjnI CCWGG 5 cut(s) 730, 903, 1572, 1834, 1905
AloI GAACNNNNNNTCC 2 cut(s) 2010, 2042
Alw21I GWGCWC 4 cut(s) 804, 1030, 1905, 1971
Alw26I GTCTC 2 cut(s) 416, 1721
AlwI GGATC 3 cut(s) 969, 1564, 1584
AlwNI CAGNNNCTG 2 cut(s) 1016, 1559
Aor13HI TCCGGA 1 cut(s) 1762
AoxI GGCC 7 cut(s) 6, 32, 249, 707, 794, 1044, 1656
ApoI RAATTY 4 cut(s) 685, 1330, 1598, 1630
AsiGI ACCGGT 1 cut(s) 425
Asp700I GAANNNNTTC 1 cut(s) 1589
AspLEI GCGC 4 cut(s) 200, 299, 1137, 1377
AsuC2I CCSGG 1 cut(s) 2001
AsuHPI GGTGA 3 cut(s) 672, 1376, 1585
BalI TGGCCA 1 cut(s) 1658
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 804
BarI GAAGNNNNNNTAC 2 cut(s) 47, 79
BbsI GAAGAC 1 cut(s) 1089
Bbv12I GWGCWC 4 cut(s) 804, 1030, 1905, 1971
BccI CCATC 7 cut(s) 150, 213, 600, 820, 1214, 1667, 2003
BceAI ACGGC 4 cut(s) 236, 318, 653, 1031
BcgI CGANNNNNNTGC 2 cut(s) 946, 980
BciT130I CCWGG 5 cut(s) 732, 905, 1574, 1836, 1907
BclI TGATCA 1 cut(s) 639
BcnI CCSGG 1 cut(s) 2001
BcoDI GTCTC 2 cut(s) 416, 1721
BfaI CTAG 6 cut(s) 240, 351, 999, 1626, 2021, 2195
BfmI CTRYAG 2 cut(s) 378, 1106
BfoI RGCGCY 3 cut(s) 201, 1138, 1378
BfuAI ACCTGC 1 cut(s) 1353
BglI GCCNNNNNGGC 1 cut(s) 31
BglII AGATCT 1 cut(s) 1201
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 6 cut(s) 732, 905, 1574, 1836, 1907, 2001
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 6 cut(s) 732, 905, 1574, 1836, 1907, 2001
BmrI ACTGGG 1 cut(s) 686
BmsI GCATC 9 cut(s) 300, 432, 537, 825, 1310, 1446, 1718, 1794, 2209
BmuI ACTGGG 1 cut(s) 686
BpiI GAAGAC 1 cut(s) 1089
BpmI CTGGAG 2 cut(s) 131, 753
Bpu10I CCTNAGC 1 cut(s) 798
BpuEI CTTGAG 1 cut(s) 1919
BpuMI CCSGG 1 cut(s) 2001
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 2 cut(s) 416, 1721
BsaJI CCNNGG 5 cut(s) 270, 300, 1572, 1835, 1906
BsaWI WCCGGW 4 cut(s) 425, 604, 1126, 1762
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 1 cut(s) 716
Bse118I RCCGGY 2 cut(s) 34, 425
Bse1I ACTGG 6 cut(s) 61, 692, 797, 1349, 2066, 2089
Bse3DI GCAATG 3 cut(s) 866, 1039, 2226
BseAI TCCGGA 1 cut(s) 1762
BseBI CCWGG 5 cut(s) 732, 905, 1574, 1836, 1907
BseDI CCNNGG 5 cut(s) 270, 300, 1572, 1835, 1906
BseGI GGATG 6 cut(s) 447, 552, 1733, 1864, 1916, 1993
BseLI CCNNNNNNNGG 1 cut(s) 716
BseMI GCAATG 3 cut(s) 866, 1039, 2226
BseMII CTCAG 5 cut(s) 428, 695, 789, 1107, 1732
BseNI ACTGG 6 cut(s) 61, 692, 797, 1349, 2066, 2089
BseRI GAGGAG 2 cut(s) 434, 964
BsgI GTGCAG 1 cut(s) 749
Bsh1236I CGCG 1 cut(s) 556
Bsh1285I CGRYCG 1 cut(s) 430
BshFI GGCC 7 cut(s) 8, 34, 251, 709, 796, 1046, 1658
BshNI GGYRCC 1 cut(s) 197
BshTI ACCGGT 1 cut(s) 425
BsiEI CGRYCG 1 cut(s) 430
BsiHKAI GWGCWC 4 cut(s) 804, 1030, 1905, 1971
BsiSI CCGG 6 cut(s) 35, 426, 605, 1127, 1763, 2001
BslFI GGGAC 2 cut(s) 740, 1905
BslI CCNNNNNNNGG 1 cut(s) 716
BsmAI GTCTC 2 cut(s) 416, 1721
BsmFI GGGAC 2 cut(s) 740, 1905
BsmI GAATGC 2 cut(s) 235, 1414
BsnI GGCC 7 cut(s) 8, 34, 251, 709, 796, 1046, 1658
Bso31I GGTCTC 2 cut(s) 416, 1721
Bsp1286I GDGCHC 4 cut(s) 804, 1030, 1905, 1971
Bsp13I TCCGGA 1 cut(s) 1762
Bsp1407I TGTACA 1 cut(s) 1537
Bsp143I GATC 8 cut(s) 639, 961, 991, 1201, 1556, 1576, 1769, 1877
BspACI CCGC 4 cut(s) 26, 138, 195, 716
BspANI GGCC 7 cut(s) 8, 34, 251, 709, 796, 1046, 1658
BspCNI CTCAG 5 cut(s) 427, 696, 790, 1108, 1731
BspEI TCCGGA 1 cut(s) 1762
BspFNI CGCG 1 cut(s) 556
BspHI TCATGA 1 cut(s) 2056
BspLI GGNNCC 1 cut(s) 199
BspMAI CTGCAG 2 cut(s) 382, 1110
BspMI ACCTGC 1 cut(s) 1353
BspPI GGATC 3 cut(s) 969, 1564, 1584
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 2 cut(s) 416, 1721
BsrDI GCAATG 3 cut(s) 866, 1039, 2226
BsrFI RCCGGY 2 cut(s) 34, 425
BsrGI TGTACA 1 cut(s) 1537
BsrI ACTGG 6 cut(s) 61, 692, 797, 1349, 2066, 2089
BssAI RCCGGY 2 cut(s) 34, 425
BssECI CCNNGG 5 cut(s) 270, 300, 1572, 1835, 1906
BssMI GATC 8 cut(s) 639, 961, 991, 1201, 1556, 1576, 1769, 1877
BssNAI GTATAC 1 cut(s) 585
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 270
Bst1107I GTATAC 1 cut(s) 585
Bst2UI CCWGG 5 cut(s) 732, 905, 1574, 1836, 1907
Bst4CI ACNGT 6 cut(s) 17, 247, 579, 619, 1450, 1927
Bst6I CTCTTC 2 cut(s) 525, 936
BstACI GRCGYC 1 cut(s) 198
BstAPI GCANNNNNTGC 4 cut(s) 1016, 1025, 1088, 1728
BstAUI TGTACA 1 cut(s) 1537
BstC8I GCNNGC 6 cut(s) 10, 36, 1030, 1080, 1809, 1997
BstDEI CTNAG 8 cut(s) 414, 704, 798, 937, 1116, 1718, 1782, 1800
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 6 cut(s) 447, 552, 1733, 1864, 1916, 1993
BstFNI CGCG 1 cut(s) 556
BstH2I RGCGCY 3 cut(s) 201, 1138, 1378
BstHHI GCGC 4 cut(s) 200, 299, 1137, 1377
BstKTI GATC 8 cut(s) 642, 964, 994, 1204, 1559, 1579, 1772, 1880
BstMAI GTCTC 2 cut(s) 416, 1721
BstMBI GATC 8 cut(s) 639, 961, 991, 1201, 1556, 1576, 1769, 1877
BstMCI CGRYCG 1 cut(s) 430
BstNI CCWGG 5 cut(s) 732, 905, 1574, 1836, 1907
BstNSI RCATGY 4 cut(s) 235, 437, 1082, 1999
BstSCI CCNGG 6 cut(s) 730, 903, 1572, 1834, 1905, 1999
BstSFI CTRYAG 2 cut(s) 378, 1106
BstUI CGCG 1 cut(s) 556
BstV2I GAAGAC 1 cut(s) 1089
BstX2I RGATCY 4 cut(s) 961, 1201, 1556, 1576
BstXI CCANNNNNNTGG 2 cut(s) 156, 2036
BstYI RGATCY 4 cut(s) 961, 1201, 1556, 1576
BstZ17I GTATAC 1 cut(s) 585
BsuRI GGCC 7 cut(s) 8, 34, 251, 709, 796, 1046, 1658
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 6 cut(s) 447, 552, 1733, 1864, 1916, 1993
BtsI GCAGTG 3 cut(s) 35, 147, 1731
BtsIMutI CAGTG 6 cut(s) 35, 147, 699, 1356, 1731, 1887
BveI ACCTGC 1 cut(s) 1353
Cac8I GCNNGC 6 cut(s) 10, 36, 1030, 1080, 1809, 1997
CaiI CAGNNNCTG 2 cut(s) 1016, 1559
CciI TCATGA 1 cut(s) 2056
CfoI GCGC 4 cut(s) 200, 299, 1137, 1377
Cfr10I RCCGGY 2 cut(s) 34, 425
CsiI ACCWGGT 1 cut(s) 903
Csp6I GTAC 6 cut(s) 58, 64, 465, 558, 620, 1538
CspAI ACCGGT 1 cut(s) 425
CspCI CAANNNNNGTGG 2 cut(s) 484, 519
CviQI GTAC 6 cut(s) 58, 64, 465, 558, 620, 1538
DdeI CTNAG 8 cut(s) 414, 704, 798, 937, 1116, 1718, 1782, 1800
DinI GGCGCC 1 cut(s) 199
DpnI GATC 8 cut(s) 641, 963, 993, 1203, 1558, 1578, 1771, 1879
DpnII GATC 8 cut(s) 639, 961, 991, 1201, 1556, 1576, 1769, 1877
DraIII CACNNNGTG 1 cut(s) 1975
EaeI YGGCCR 4 cut(s) 32, 249, 1044, 1656
Eam1104I CTCTTC 2 cut(s) 525, 936
EarI CTCTTC 2 cut(s) 525, 936
Ecl136II GAGCTC 1 cut(s) 802
Eco130I CCWWGG 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 804
Eco31I GGTCTC 2 cut(s) 416, 1721
Eco32I GATATC 1 cut(s) 678
Eco53kI GAGCTC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 386
EcoICRI GAGCTC 1 cut(s) 802
EcoRI GAATTC 1 cut(s) 685
EcoRII CCWGG 5 cut(s) 730, 903, 1572, 1834, 1905
EcoRV GATATC 1 cut(s) 678
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 3 cut(s) 237, 873, 1080
EcoT38I GRGCYC 1 cut(s) 804
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 270
FaqI GGGAC 2 cut(s) 740, 1905
FauI CCCGC 1 cut(s) 709
FauNDI CATATG 2 cut(s) 726, 867
FbaI TGATCA 1 cut(s) 639
FblI GTMKAC 2 cut(s) 430, 584
FokI GGATG 6 cut(s) 454, 559, 1740, 1871, 1923, 2000
FriOI GRGCYC 1 cut(s) 804
FspBI CTAG 6 cut(s) 240, 351, 999, 1626, 2021, 2195
GlaI GCGC 4 cut(s) 199, 298, 1136, 1376
GsuI CTGGAG 2 cut(s) 131, 753
HaeII RGCGCY 3 cut(s) 201, 1138, 1378
HaeIII GGCC 7 cut(s) 8, 34, 251, 709, 796, 1046, 1658
HapII CCGG 6 cut(s) 35, 426, 605, 1127, 1763, 2001
HhaI GCGC 4 cut(s) 200, 299, 1137, 1377
Hin1I GRCGYC 1 cut(s) 198
Hin6I GCGC 4 cut(s) 198, 297, 1135, 1375
HinP1I GCGC 4 cut(s) 198, 297, 1135, 1375
HincII GTYRAC 1 cut(s) 431
HindII GTYRAC 1 cut(s) 431
HpaII CCGG 6 cut(s) 35, 426, 605, 1127, 1763, 2001
HphI GGTGA 3 cut(s) 672, 1376, 1585
Hpy166II GTNNAC 6 cut(s) 222, 431, 585, 1538, 1646, 2046
Hpy188I TCNGA 6 cut(s) 73, 411, 847, 1468, 1584, 2188
Hpy8I GTNNAC 6 cut(s) 222, 431, 585, 1538, 1646, 2046
HpyAV CCTTC 4 cut(s) 852, 1238, 1424, 1706
HpyCH4III ACNGT 6 cut(s) 17, 247, 579, 619, 1450, 1927
HpyCH4IV ACGT 2 cut(s) 2053, 2062
HpyF3I CTNAG 8 cut(s) 414, 704, 798, 937, 1116, 1718, 1782, 1800
HpySE526I ACGT 2 cut(s) 2053, 2062
Hsp92I GRCGYC 1 cut(s) 198
HspAI GCGC 4 cut(s) 198, 297, 1135, 1375
KasI GGCGCC 1 cut(s) 197
Kpn2I TCCGGA 1 cut(s) 1762
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 639
Kzo9I GATC 8 cut(s) 639, 961, 991, 1201, 1556, 1576, 1769, 1877
LmnI GCTCC 6 cut(s) 843, 973, 1129, 1434, 1765, 1966
LweI GCATC 9 cut(s) 300, 432, 537, 825, 1310, 1446, 1718, 1794, 2209
MabI ACCWGGT 1 cut(s) 903
MaeI CTAG 6 cut(s) 240, 351, 999, 1626, 2021, 2195
MaeII ACGT 2 cut(s) 2053, 2062
MaeIII GTNAC 4 cut(s) 1166, 1321, 1882, 1918
MalI GATC 8 cut(s) 641, 963, 993, 1203, 1558, 1578, 1771, 1879
MboI GATC 8 cut(s) 639, 961, 991, 1201, 1556, 1576, 1769, 1877
MboII GAAGA 8 cut(s) 379, 542, 623, 685, 953, 1089, 1229, 1571
MflI RGATCY 4 cut(s) 961, 1201, 1556, 1576
MhlI GDGCHC 4 cut(s) 804, 1030, 1905, 1971
MlsI TGGCCA 1 cut(s) 1658
MluCI AATT 9 cut(s) 685, 1020, 1083, 1282, 1287, 1330, 1598, 1630, 1738
MluI ACGCGT 1 cut(s) 554
MluNI TGGCCA 1 cut(s) 1658
Mly113I GGCGCC 1 cut(s) 198
MlyI GAGTC 5 cut(s) 406, 953, 1787, 1878, 1887
Mox20I TGGCCA 1 cut(s) 1658
Mph1103I ATGCAT 3 cut(s) 237, 873, 1080
MroI TCCGGA 1 cut(s) 1762
MroNI GCCGGC 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 1589
MscI TGGCCA 1 cut(s) 1658
MseI TTAA 9 cut(s) 213, 345, 1157, 1251, 1286, 1290, 1308, 1328, 1475
MslI CAYNNNNRTG 3 cut(s) 154, 870, 1988
Msp20I TGGCCA 1 cut(s) 1658
MspI CCGG 6 cut(s) 35, 426, 605, 1127, 1763, 2001
MspR9I CCNGG 6 cut(s) 732, 905, 1574, 1836, 1907, 2001
Mva1269I GAATGC 2 cut(s) 235, 1414
MvaI CCWGG 5 cut(s) 732, 905, 1574, 1836, 1907
MvnI CGCG 1 cut(s) 556
NaeI GCCGGC 1 cut(s) 36
NarI GGCGCC 1 cut(s) 198
NciI CCSGG 1 cut(s) 2001
NdeI CATATG 2 cut(s) 726, 867
NdeII GATC 8 cut(s) 639, 961, 991, 1201, 1556, 1576, 1769, 1877
NgoMIV GCCGGC 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 1734
NmuCI GTSAC 1 cut(s) 1882
NsiI ATGCAT 3 cut(s) 237, 873, 1080
NspI RCATGY 4 cut(s) 235, 437, 1082, 1999
PacI TTAATTAA 1 cut(s) 1290
PaeI GCATGC 2 cut(s) 1082, 1999
PagI TCATGA 1 cut(s) 2056
PceI AGGCCT 1 cut(s) 8
PciI ACATGT 1 cut(s) 433
PcsI WCGNNNNNNNCGW 3 cut(s) 560, 953, 2059
PctI GAATGC 2 cut(s) 235, 1414
PdiI GCCGGC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 1589
PfeI GAWTC 7 cut(s) 406, 601, 1469, 1550, 1563, 1609, 2032
PinAI ACCGGT 1 cut(s) 425
PleI GAGTC 5 cut(s) 406, 952, 1786, 1877, 1887
PluTI GGCGCC 1 cut(s) 201
PpsI GAGTC 5 cut(s) 406, 952, 1786, 1877, 1887
PscI ACATGT 1 cut(s) 433
Psp124BI GAGCTC 1 cut(s) 804
Psp6I CCWGG 5 cut(s) 730, 903, 1572, 1834, 1905
PspGI CCWGG 5 cut(s) 730, 903, 1572, 1834, 1905
PspN4I GGNNCC 1 cut(s) 199
PstI CTGCAG 2 cut(s) 382, 1110
PstNI CAGNNNCTG 2 cut(s) 1016, 1559
PsuI RGATCY 4 cut(s) 961, 1201, 1556, 1576
RsaI GTAC 6 cut(s) 59, 65, 466, 559, 621, 1539
RsaNI GTAC 6 cut(s) 58, 64, 465, 558, 620, 1538
RseI CAYNNNNRTG 3 cut(s) 154, 870, 1988
SacI GAGCTC 1 cut(s) 804
SalI GTCGAC 1 cut(s) 429
SaqAI TTAA 9 cut(s) 213, 345, 1157, 1251, 1286, 1290, 1308, 1328, 1475
Sau3AI GATC 8 cut(s) 639, 961, 991, 1201, 1556, 1576, 1769, 1877
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 5 cut(s) 406, 953, 1787, 1878, 1887
ScrFI CCNGG 6 cut(s) 732, 905, 1574, 1836, 1907, 2001
SduI GDGCHC 4 cut(s) 804, 1030, 1905, 1971
SexAI ACCWGGT 1 cut(s) 903
SfaNI GCATC 9 cut(s) 300, 432, 537, 825, 1310, 1446, 1718, 1794, 2209
SfcI CTRYAG 2 cut(s) 378, 1106
SfoI GGCGCC 1 cut(s) 199
SmiMI CAYNNNNRTG 3 cut(s) 154, 870, 1988
SmlI CTYRAG 1 cut(s) 1898
SmoI CTYRAG 1 cut(s) 1898
SphI GCATGC 2 cut(s) 1082, 1999
Sse9I AATT 9 cut(s) 685, 1020, 1083, 1282, 1287, 1330, 1598, 1630, 1738
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 4 cut(s) 26, 138, 195, 716
SspDI GGCGCC 1 cut(s) 197
SspI AATATT 2 cut(s) 982, 1155
SspMI CTAG 6 cut(s) 240, 351, 999, 1626, 2021, 2195
SstI GAGCTC 1 cut(s) 804
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 6 cut(s) 730, 903, 1572, 1834, 1905, 1999
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 6 cut(s) 17, 247, 579, 619, 1450, 1927
TaiI ACGT 2 cut(s) 2056, 2065
TaqI TCGA 2 cut(s) 430, 947
TasI AATT 9 cut(s) 685, 1020, 1083, 1282, 1287, 1330, 1598, 1630, 1738
TatI WGTACW 3 cut(s) 63, 464, 1537
TauI GCSGC 2 cut(s) 28, 198
TfiI GAWTC 7 cut(s) 406, 601, 1469, 1550, 1563, 1609, 2032
Tru1I TTAA 9 cut(s) 213, 345, 1157, 1251, 1286, 1290, 1308, 1328, 1475
Tru9I TTAA 9 cut(s) 213, 345, 1157, 1251, 1286, 1290, 1308, 1328, 1475
TscAI CASTG 6 cut(s) 35, 147, 699, 1356, 1738, 1887
TseFI GTSAC 1 cut(s) 1882
Tsp45I GTSAC 1 cut(s) 1882
TspRI CASTG 6 cut(s) 35, 147, 699, 1356, 1738, 1887
XapI RAATTY 4 cut(s) 685, 1330, 1598, 1630
XceI RCATGY 4 cut(s) 235, 437, 1082, 1999
XmiI GTMKAC 2 cut(s) 430, 584
XmnI GAANNNNTTC 1 cut(s) 1589
XspI CTAG 6 cut(s) 240, 351, 999, 1626, 2021, 2195
ZrmI AGTACT 1 cut(s) 466
Zsp2I ATGCAT 3 cut(s) 237, 873, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.