Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

639627 .. 640180

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTCCGTCACACACAAGACCAAACAAAACACTCCCAAAAACCATGTCATCTCTTCCTTCGGCGATCTCGGGGCCACATTGGACATCCCCTCCAATCTCCGCTGCTTCCTCGTCCGCGGGAGCCCTTACGTCACCTGCTCTGTCTCTAACCCTATTACTCAACTTTCAATCCCAACCGTCCGTGCTTTTCTCTCGTATCAACAACGAAACGTGGCTTCTATATGCCTCCTCAGCAATCAACTTGAAACTTACCAGCGACACAAACTCGTAACTTCTGGTGGGTTTTCTGGGATCATCCGGATTGCTATGTTGCCGGGTTCTAATCCAAAATCCGAGTCGTTTCTGGACAAGTTCAGTTCTTGCTACCCGGTTTCCGGCAATGGAGCTTTCAAAAAACAGTCTTGTTTGGAGTATAAGTGGGAAAAGAAGGGGTGTGGGGATTTGATAATATGCTTGCTCATACCCTCCACCTGCAGCTTCTCTCTGTTGATGAAAGTAATGCAACTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

171

Amino Acids

18.75

Weight (kDa)

9.39

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_81	PF03639	10 - 151	2e-13	Glycosyl hydrolase family 81 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	143, 479
Acc36I	ACCTGC	2 cut(s)	143, 479
AccII	CGCG	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	3 cut(s)	100, 115, 117
AclWI	GGATC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	168, 245, 391
AluBI	AGCT	2 cut(s)	386, 477
AluI	AGCT	2 cut(s)	386, 477
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	68
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	102, 474
ArsI	GACNNNNNNTTYG	4 cut(s)	30, 62, 320, 352
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	2 cut(s)	315, 368
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	125
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	89, 486
BcnI	CCSGG	2 cut(s)	315, 368
BcoDI	GTCTC	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	472
BfuAI	ACCTGC	2 cut(s)	143, 479
BisI	GCNGC	2 cut(s)	103, 475
BlsI	GCNGC	2 cut(s)	104, 476
Bme1390I	CCNGG	2 cut(s)	315, 368
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	73, 122
BmrFI	CCNGG	2 cut(s)	315, 368
Bpu10I	CCTNAGC	1 cut(s)	230
BpuMI	CCSGG	2 cut(s)	315, 368
BsaJI	CCNNGG	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse3DI	GCAATG	1 cut(s)	385
BseAI	TCCGGA	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	84, 294
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	89, 486
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	4 cut(s)	298, 314, 368, 375
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	64, 291
BspACI	CCGC	3 cut(s)	100, 115, 117
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	243
BspEI	TCCGGA	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	73, 122
BspMAI	CTGCAG	1 cut(s)	476
BspMI	ACCTGC	2 cut(s)	143, 479
BspPI	GGATC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	2 cut(s)	64, 291
Bst4CI	ACNGT	3 cut(s)	178, 399, 507
Bst6I	CTCTTC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	84, 294
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	2 cut(s)	67, 294
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	2 cut(s)	64, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	313, 366
BstSFI	CTRYAG	1 cut(s)	472
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	89, 486
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	84, 294
BveI	ACCTGC	2 cut(s)	143, 479
Cac8I	GCNNGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	72
Cfr42I	CCGCGG	1 cut(s)	118
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	5 cut(s)	74, 123, 215, 386, 477
CviKI_1	RGCY	5 cut(s)	74, 123, 215, 386, 477
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	2 cut(s)	66, 293
DpnII	GATC	2 cut(s)	64, 291
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	1 cut(s)	47
FaiI	YATR	7 cut(s)	45, 221, 223, 308, 414, 451, 461
FatI	CATG	1 cut(s)	43
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	103, 475
FokI	GGATG	2 cut(s)	71, 281
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	103, 475
GluI	GCNGC	2 cut(s)	103, 475
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	4 cut(s)	298, 314, 368, 375
Hin1II	CATG	1 cut(s)	47
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	4 cut(s)	298, 314, 368, 375
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	2 cut(s)	298, 344
HpyAV	CCTTC	2 cut(s)	67, 421
HpyCH4III	ACNGT	3 cut(s)	178, 399, 507
HpyCH4IV	ACGT	2 cut(s)	129, 210
HpyCH4V	TGCA	2 cut(s)	474, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	2 cut(s)	129, 210
Hsp92II	CATG	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	297
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	64, 291
LmnI	GCTCC	2 cut(s)	120, 383
Lsp1109I	GCAGC	2 cut(s)	89, 486
MaeII	ACGT	2 cut(s)	129, 210
MaeIII	GTNAC	3 cut(s)	7, 130, 268
MalI	GATC	2 cut(s)	66, 293
MboI	GATC	2 cut(s)	64, 291
MboII	GAAGA	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	5 cut(s)	100, 119, 236, 239, 475
MroI	TCCGGA	1 cut(s)	297
MspA1I	CMGCKG	2 cut(s)	102, 117
MspI	CCGG	4 cut(s)	298, 314, 368, 375
MspR9I	CCNGG	2 cut(s)	315, 368
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	231
NciI	CCSGG	2 cut(s)	315, 368
NdeII	GATC	2 cut(s)	64, 291
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	2 cut(s)	73, 122
NmuCI	GTSAC	2 cut(s)	7, 130
PaqCI	CACCTGC	2 cut(s)	143, 479
PkrI	GCNGC	2 cut(s)	104, 476
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	73, 122
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	476
SacII	CCGCGG	1 cut(s)	118
SatI	GCNGC	2 cut(s)	103, 475
Sau3AI	GATC	2 cut(s)	64, 291
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	315, 368
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	6 cut(s)	132, 137, 213, 388, 473, 479
SfcI	CTRYAG	1 cut(s)	472
Sfr303I	CCGCGG	1 cut(s)	118
SgrBI	CCGCGG	1 cut(s)	118
SsiI	CCGC	3 cut(s)	100, 115, 117
StyD4I	CCNGG	2 cut(s)	313, 366
TaaI	ACNGT	3 cut(s)	178, 399, 507
TaiI	ACGT	2 cut(s)	132, 213
TseFI	GTSAC	2 cut(s)	7, 130
TseI	GCWGC	2 cut(s)	102, 474
Tsp45I	GTSAC	2 cut(s)	7, 130
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.