Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Reverse (-)

1017927 .. 1018292

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00077500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTATGAGAATGTTTTCGCAAGTGAAAACAAGGTCACTGGAGTTGTGTGGTCTAATAAGATAGATACCGGACTTTGGTTTGCTCCTCCAGAGTCAAGGGAGCGCAGGCTTGGCATTCAGGTGCTGCCAATTTCGCCTATCACTGAGGCCTTGTTCTCTAATGTTAGCTATGTTAGGGAAATTGTAGATTGGACAATGCCAGCTTTGAGTGGAGAGGGAGTAACTGAAGCATGGAAAGGGTTTGCTTATGCCTTGGAAGGGATGTATAACAAAGAAGAGGCTCTGCAAAAGATCAGAAACTTGAATGGTTTTGATGATGGGAACTCACTTACCAGCCTCTTTTGGTGGGTCCACAGTAGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

121

Amino Acids

13.73

Weight (kDa)

4.96

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	6 - 116	1.6e-23	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	75, 258
AgsI	TTSAA	1 cut(s)	304
AluBI	AGCT	2 cut(s)	168, 203
AluI	AGCT	2 cut(s)	168, 203
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	364
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	350
BpmI	CTGGAG	2 cut(s)	60, 72
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 258
Bse1I	ACTGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	75, 258
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	111
BshFI	GGCC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	75, 258
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	107, 201
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 133
BstV1I	GCAGC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	36, 141
Cac8I	GCNNGC	2 cut(s)	107, 201
CaiI	CAGNNNCTG	1 cut(s)	124
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	349
CviAII	CATG	1 cut(s)	231
CviJI	RGCY	7 cut(s)	109, 149, 168, 203, 281, 336, 363
CviKI_1	RGCY	7 cut(s)	109, 149, 168, 203, 281, 336, 363
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	234
FaiI	YATR	5 cut(s)	6, 171, 232, 249, 267
FatI	CATG	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	1 cut(s)	364
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	125
GsuI	CTGGAG	2 cut(s)	60, 72
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	234
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	1 cut(s)	296
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 133
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	234
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	88, 100
LpnPI	CCDG	7 cut(s)	24, 82, 91, 102, 104, 213, 346
Lsp1109I	GCAGC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	364
MaeIII	GTNAC	2 cut(s)	34, 220
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	1 cut(s)	287
MluCI	AATT	2 cut(s)	129, 180
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	6 cut(s)	96, 139, 208, 271, 347, 353
MroXI	GAANNNNTTC	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	119
MspI	CCGG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	111, 133
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	1 cut(s)	234
NlaIV	GGNNCC	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	34
PceI	AGGCCT	1 cut(s)	149
PctI	GAATGC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	350
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	119
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	101
SetI	ASST	4 cut(s)	36, 123, 170, 205
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	129, 180
SseBI	AGGCCT	1 cut(s)	149
SspMI	CTAG	1 cut(s)	364
StuI	AGGCCT	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	356
TasI	AATT	2 cut(s)	129, 180
TscAI	CASTG	2 cut(s)	43, 148
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	34
TspRI	CASTG	2 cut(s)	43, 148
VpaK11BI	GGWCC	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.