Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

84802568 .. 84805016

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG617900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGGCTTCCAATAATATGACCTTGATGACATTCTTCCTCATCATCTCCCTCGCTTTTTTCATCCTCCCTCAAACCCAAGCCAGACTACTACTTTCCGAAACGCAAGCAACTCCGGCCACCGGCTTCCTCTTTCCGAAAGCCGAGTCCACAGTTCTCCCTGACCCTTCACCGTTCTTTGCCCCAAGCCTCCTCCAAACCCCACTCCCCACAAACTCTTTCTTCCAAAACTTTGTACTCAACAATGGCGACCAGCCCGAATATTTCCACCCCTACCATTTCAGATCCTCCAACTCCTCCCTCTCTCTCTCCTACCCGACTCGCCTTGCCACCTCCGCTTCCATATCCCAGAACTTCACCCCTGAACTCACCATCTCCGCCACCCAAAACAACCAAGAACGCCATGTAGTCTCTTCCTTCAGTGACCTCGGCGTCACTCTAGACTTCCCCTCCTCCAATCTCCGCTTCTTCCTCGTCAAGGGAAGCCCCTACTTGACATGCAATGTGTCTAATCCCACCGCGCTTTCCATTTCCACCGCTAGTTCAATCACTTCTTTGTTTCCAAACGCTCAACGCAACAAGTACACATTAAAGCTCGACAACAGTCAGACAATGCTGGTGTACTCGTCCTCTCCGATTGGTCTCACCATCAGCAACCCATCACTGATCACTTCCGACGCATTTACCGGGGTTATGAGGGTTGCTTTGTTGCCGCCAGGCTCTCAAGATCTCGAGGCAGTTCTAGACCAGTTCAGTTCTTCTTACCCGGTTTCGGGCGAGGCAGTGTTCACAGGGGCTTTTACATTGGAGTATAGATGGGTGAAAGAAGGAAATGGAGATTTGCTTATGCTAGCTCATCCTCTCCATCAACAACTTCTGTCTGTTCAGGACAGTAATGCCACTGTTCTTGACTATCTCAAGTACAGAAGCATTGATGGTGATCTCCTAGGCGTTGTGGGAAACTCTTGGGTGTTGAAAACACAGCCTATTCCAGTCTCTTGGCATTCGATTACAGGTGTCAAGGACCTAGTACAGGCATTACCTGAAATAAAAGCCGCTCTTTCTGGTGACGTTCAGGCTCTAATTTCGACACCAGTATCAACAACAGCTTCATATGAATATGGAAAATTGATTGCCAAGGCGGCAAGGCTGGCTTTGATTGGTGAAGAGGTGGGTGTTAAAGATATTCCAGCCATTACAAAGTTTTTGAAGGATGCAATTGAGCCATGGTTGAGTGGGACTTTCAGTGGGAATGGTTTCTTGTATGAAGGTAAATGGGGTGGACTTGTAACGAAAAATGGAGCAGTTGATAAAGGTGCAGATTACGGGTTTGGAGTGTATAATGATCACCATTTCCATCTTGGCTATTTTCTCTATGCGATTTCAGTAGTTGCAAAGCTTGACGTGGATTGGGGGATGAAGTTTAAGGATCAAGCTTATGCTCTTGCTGGGGATTTCATGAACTTAAACAGGCAGCCAGATTCAAGTTATCCGCGGTTGAGGAACTTCGATCTCTACAATTTGCATTCGTGGGCCGGAGGGTTAACTGAATTTGCAGATGGACGAAATCAAGAGAGTACAAGTGAGGCAGTGAATGCTTACTACTCGGCTGCATTGATGGGGTTAGCCTATAGAGATACTAATCTCACTGACACAGCATCATTGCTTGCAGCACTGGAGATTCAGGCATCTCAAAAGTGGTGGCATGTGCACCAAGGAGATAACATCTATGAGGATGTCTTCGCGAGTCAGAATAAGATCACTGGAATTGTGTGGTCTAATAAGAGGGATACCGGTCTTTGGTTTGCTTCAGCAGAGTCGAAAGAAATCAGGCTTGGAATTCAGGTGCTGCCGATTACCCCTATCACTGAGGCCTTGTTCTCCAATGCCAGCTATGTTAGGGAGGTTGTAGATTGGACAATACCAGCTCTGAATAGGGAGGGAGTTACGGATGCATGGAGAGGGTTTGCTTATGCCTTGGAAGGGATATACAACAAGGAAGAGGCTTTGCAGAAGGTTAAAAACTTGAAAGGTTTTGATGATGGGAACTCACTTTCGAATCTCTTATGGTGGATCCACAGCAGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

695

Amino Acids

76.56

Weight (kDa)

5.38

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_81	PF03639	64 - 332	6.3e-57	Glycosyl hydrolase family 81 N-terminal domain
Glyco_hydro81C	PF17652	345 - 690	2.6e-100	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	428
AccBSI	CCGCTC	1 cut(s)	1055
AccII	CGCG	3 cut(s)	518, 1492, 1742
AclWI	GGATC	4 cut(s)	276, 1434, 2065, 2078
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	1547, 1836
AcuI	CTGAAG	2 cut(s)	400, 1791
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	6 cut(s)	234, 581, 620, 920, 1029, 1576
AfiI	CCNNNNNNNGG	7 cut(s)	119, 475, 769, 770, 1030, 1797, 1980
AgeI	ACCGGT	1 cut(s)	1790
AgsI	TTSAA	5 cut(s)	543, 973, 1207, 1482, 2026
AjiI	CACGTC	1 cut(s)	1402
AjnI	CCWGG	1 cut(s)	712
AjuI	GAANNNNNNNTTGG	4 cut(s)	446, 478, 1815, 1847
AluBI	AGCT	7 cut(s)	592, 851, 1106, 1396, 1433, 1890, 1925
AluI	AGCT	7 cut(s)	592, 851, 1106, 1396, 1433, 1890, 1925
Alw21I	GWGCWC	1 cut(s)	1710
Alw26I	GTCTC	3 cut(s)	412, 644, 997
Alw44I	GTGCAC	1 cut(s)	1706
AlwI	GGATC	4 cut(s)	276, 1434, 2065, 2078
AlwNI	CAGNNNCTG	1 cut(s)	1846
Ama87I	CYCGRG	1 cut(s)	728
AoxI	GGCC	3 cut(s)	114, 1530, 1869
ApaLI	GTGCAC	1 cut(s)	1706
ApeKI	GCWGC	4 cut(s)	1471, 1607, 1667, 1846
ApoI	RAATTY	2 cut(s)	1547, 1836
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AsiGI	ACCGGT	1 cut(s)	1790
Asp700I	GAANNNNTTC	1 cut(s)	1253
AspA2I	CCTAGG	1 cut(s)	943
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	2 cut(s)	1021, 1530
AsuC2I	CCSGG	2 cut(s)	685, 764
AsuHPI	GGTGA	9 cut(s)	159, 346, 358, 634, 829, 947, 1076, 1172, 1337
AsuII	TTCGAA	1 cut(s)	2054
AsuNHI	GCTAGC	1 cut(s)	847
AvaI	CYCGRG	1 cut(s)	728
AvaII	GGWCC	1 cut(s)	1021
AvrII	CCTAGG	1 cut(s)	943
BaeGI	GKGCMC	1 cut(s)	1710
BaeI	ACNNNNGTAYC	2 cut(s)	1077, 1110
BamHI	GGATCC	1 cut(s)	2070
BbsI	GAAGAC	1 cut(s)	1729
Bbv12I	GWGCWC	1 cut(s)	1710
BbvI	GCAGC	4 cut(s)	1483, 1594, 1679, 1833
BciT130I	CCWGG	1 cut(s)	714
BciVI	GTATCC	1 cut(s)	1780
BclI	TGATCA	2 cut(s)	663, 1342
BcnI	CCSGG	2 cut(s)	685, 764
BcoDI	GTCTC	3 cut(s)	412, 644, 997
BfaI	CTAG	7 cut(s)	437, 537, 740, 848, 944, 1025, 2086
BfmI	CTRYAG	1 cut(s)	1627
BfuI	GTATCC	1 cut(s)	1780
BglI	GCCNNNNNGGC	1 cut(s)	1139
BglII	AGATCT	1 cut(s)	724
BisI	GCNGC	7 cut(s)	710, 1053, 1140, 1472, 1608, 1668, 1847
BlnI	CCTAGG	1 cut(s)	943
BlsI	GCNGC	7 cut(s)	711, 1054, 1141, 1473, 1609, 1669, 1848
Bme1390I	CCNGG	3 cut(s)	685, 714, 764
Bme18I	GGWCC	1 cut(s)	1021
BmeT110I	CYCGRG	1 cut(s)	728
BmgBI	CACGTC	1 cut(s)	1402
BmgT120I	GGNCC	2 cut(s)	1021, 1530
BmiI	GGNNCC	1 cut(s)	2072
BmrFI	CCNGG	3 cut(s)	685, 714, 764
BmsI	GCATC	4 cut(s)	1201, 1664, 1694, 1939
BmtI	GCTAGC	1 cut(s)	851
BoxI	GACNNNNGTC	1 cut(s)	600
BpiI	GAAGAC	1 cut(s)	1729
BpmI	CTGGAG	1 cut(s)	1694
Bpu14I	TTCGAA	1 cut(s)	2054
BpuEI	CTTGAG	2 cut(s)	705, 899
BpuMI	CCSGG	2 cut(s)	685, 764
BsaBI	GATNNNNATC	2 cut(s)	936, 1638
BsaHI	GRCGYC	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	8 cut(s)	424, 684, 943, 1134, 1223, 1490, 1711, 1974
BsaWI	WCCGGW	1 cut(s)	1790
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	7 cut(s)	119, 475, 769, 770, 1030, 1797, 1980
Bse118I	RCCGGY	2 cut(s)	119, 1790
Bse1I	ACTGG	5 cut(s)	745, 989, 1091, 1677, 1765
Bse3DI	GCAATG	2 cut(s)	505, 1658
Bse8I	GATNNNNATC	2 cut(s)	936, 1638
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	8 cut(s)	424, 684, 943, 1134, 1223, 1490, 1711, 1974
BseGI	GGATG	6 cut(s)	60, 853, 1216, 1419, 1738, 1954
BseJI	GATNNNNATC	2 cut(s)	936, 1638
BseLI	CCNNNNNNNGG	7 cut(s)	119, 475, 769, 770, 1030, 1797, 1980
BseMI	GCAATG	2 cut(s)	505, 1658
BseMII	CTCAG	1 cut(s)	1857
BseNI	ACTGG	5 cut(s)	745, 989, 1091, 1677, 1765
BseRI	GAGGAG	3 cut(s)	179, 283, 439
BseSI	GKGCMC	1 cut(s)	1710
BseXI	GCAGC	4 cut(s)	1483, 1594, 1679, 1833
BseYI	CCCAGC	1 cut(s)	1445
BsgI	GTGCAG	1 cut(s)	1335
Bsh1236I	CGCG	3 cut(s)	518, 1492, 1742
BshFI	GGCC	3 cut(s)	116, 1532, 1871
BshTI	ACCGGT	1 cut(s)	1790
BsiHKAI	GWGCWC	1 cut(s)	1710
BsiHKCI	CYCGRG	1 cut(s)	728
BsiSI	CCGG	6 cut(s)	113, 120, 684, 764, 1533, 1791
BslFI	GGGAC	1 cut(s)	1249
BslI	CCNNNNNNNGG	7 cut(s)	119, 475, 769, 770, 1030, 1797, 1980
BsmAI	GTCTC	3 cut(s)	412, 644, 997
BsmFI	GGGAC	1 cut(s)	1249
BsmI	GAATGC	3 cut(s)	1000, 1522, 1597
BsnI	GGCC	3 cut(s)	116, 1532, 1871
Bso31I	GGTCTC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	728
Bsp119I	TTCGAA	1 cut(s)	2054
Bsp1286I	GDGCHC	1 cut(s)	1710
Bsp143I	GATC	9 cut(s)	281, 663, 724, 937, 1342, 1426, 1507, 1755, 2070
Bsp19I	CCATGG	1 cut(s)	1223
Bsp68I	TCGCGA	1 cut(s)	1742
BspANI	GGCC	3 cut(s)	116, 1532, 1871
BspCNI	CTCAG	1 cut(s)	1858
BspFNI	CGCG	3 cut(s)	518, 1492, 1742
BspHI	TCATGA	1 cut(s)	1455
BspLI	GGNNCC	1 cut(s)	2072
BspOI	GCTAGC	1 cut(s)	851
BspPI	GGATC	4 cut(s)	276, 1434, 2065, 2078
BspT104I	TTCGAA	1 cut(s)	2054
BspTNI	GGTCTC	1 cut(s)	644
BsrBI	CCGCTC	1 cut(s)	1055
BsrDI	GCAATG	2 cut(s)	505, 1658
BsrFI	RCCGGY	2 cut(s)	119, 1790
BsrI	ACTGG	5 cut(s)	745, 989, 1091, 1677, 1765
BssAI	RCCGGY	2 cut(s)	119, 1790
BssECI	CCNNGG	8 cut(s)	424, 684, 943, 1134, 1223, 1490, 1711, 1974
BssMI	GATC	9 cut(s)	281, 663, 724, 937, 1342, 1426, 1507, 1755, 2070
BssNI	GRCGYC	1 cut(s)	429
BssT1I	CCWWGG	5 cut(s)	943, 1134, 1223, 1711, 1974
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	5 cut(s)	151, 171, 602, 890, 901
Bst6I	CTCTTC	3 cut(s)	415, 1158, 1992
BstACI	GRCGYC	1 cut(s)	429
BstAPI	GCANNNNNTGC	1 cut(s)	1592
BstBI	TTCGAA	1 cut(s)	2054
BstC8I	GCNNGC	5 cut(s)	105, 849, 1149, 1665, 1888
BstDEI	CTNAG	1 cut(s)	1866
BstDSI	CCRYGG	2 cut(s)	1223, 1490
BstENI	CCTNNNNNAGG	2 cut(s)	473, 1028
BstF5I	GGATG	6 cut(s)	60, 853, 1216, 1419, 1738, 1954
BstFNI	CGCG	3 cut(s)	518, 1492, 1742
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	9 cut(s)	284, 666, 727, 940, 1345, 1429, 1510, 1758, 2073
BstMAI	GTCTC	3 cut(s)	412, 644, 997
BstMBI	GATC	9 cut(s)	281, 663, 724, 937, 1342, 1426, 1507, 1755, 2070
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 332, 1139, 1148, 1592
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	2 cut(s)	498, 1706
BstPAI	GACNNNNGTC	1 cut(s)	600
BstSCI	CCNGG	3 cut(s)	683, 712, 762
BstSFI	CTRYAG	1 cut(s)	1627
BstSLI	GKGCMC	1 cut(s)	1710
BstUI	CGCG	3 cut(s)	518, 1492, 1742
BstV1I	GCAGC	4 cut(s)	1483, 1594, 1679, 1833
BstV2I	GAAGAC	1 cut(s)	1729
BstX2I	RGATCY	3 cut(s)	281, 724, 2070
BstXI	CCANNNNNNTGG	1 cut(s)	996
BstYI	RGATCY	3 cut(s)	281, 724, 2070
BsuI	GTATCC	1 cut(s)	1780
BsuRI	GGCC	3 cut(s)	116, 1532, 1871
BtgI	CCRYGG	2 cut(s)	1223, 1490
BtrI	CACGTC	1 cut(s)	1402
BtsCI	GGATG	6 cut(s)	60, 853, 1216, 1419, 1738, 1954
BtsI	GCAGTG	2 cut(s)	786, 1593
BtuMI	TCGCGA	1 cut(s)	1742
Cac8I	GCNNGC	5 cut(s)	105, 849, 1149, 1665, 1888
CaiI	CAGNNNCTG	1 cut(s)	1846
CciI	TCATGA	1 cut(s)	1455
CfoI	GCGC	1 cut(s)	520
Cfr10I	RCCGGY	2 cut(s)	119, 1790
Cfr13I	GGNCC	2 cut(s)	1021, 1530
Cfr42I	CCGCGG	1 cut(s)	1493
CseI	GACGC	2 cut(s)	418, 683
Csp6I	GTAC	6 cut(s)	233, 580, 619, 919, 1028, 1575
CspAI	ACCGGT	1 cut(s)	1790
CspCI	CAANNNNNGTGG	4 cut(s)	886, 921, 1679, 1714
CviAII	CATG	6 cut(s)	401, 495, 1224, 1456, 1703, 1953
CviQI	GTAC	6 cut(s)	233, 580, 619, 919, 1028, 1575
DdeI	CTNAG	1 cut(s)	1866
DpnI	GATC	9 cut(s)	283, 665, 726, 939, 1344, 1428, 1509, 1757, 2072
DpnII	GATC	9 cut(s)	281, 663, 724, 937, 1342, 1426, 1507, 1755, 2070
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	3 cut(s)	415, 1158, 1992
EarI	CTCTTC	3 cut(s)	415, 1158, 1992
EciI	GGCGGA	1 cut(s)	364
Eco130I	CCWWGG	5 cut(s)	943, 1134, 1223, 1711, 1974
Eco147I	AGGCCT	1 cut(s)	1871
Eco31I	GGTCTC	1 cut(s)	644
Eco47I	GGWCC	1 cut(s)	1021
Eco57I	CTGAAG	2 cut(s)	400, 1791
Eco88I	CYCGRG	1 cut(s)	728
EcoNI	CCTNNNNNAGG	2 cut(s)	473, 1028
EcoO109I	RGGNCCY	1 cut(s)	1021
EcoRI	GAATTC	1 cut(s)	1836
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	5 cut(s)	943, 1134, 1223, 1711, 1974
EcoT22I	ATGCAT	1 cut(s)	1954
ErhI	CCWWGG	5 cut(s)	943, 1134, 1223, 1711, 1974
FaeI	CATG	6 cut(s)	404, 498, 1227, 1459, 1706, 1956
FalI	AAGNNNNNCTT	4 cut(s)	1041, 1073, 1135, 1167
FaqI	GGGAC	1 cut(s)	1249
FatI	CATG	6 cut(s)	400, 494, 1223, 1455, 1702, 1952
FauNDI	CATATG	1 cut(s)	1111
FbaI	TGATCA	2 cut(s)	663, 1342
Fnu4HI	GCNGC	7 cut(s)	710, 1053, 1140, 1472, 1608, 1668, 1847
FokI	GGATG	6 cut(s)	47, 840, 1223, 1426, 1745, 1961
Fsp4HI	GCNGC	7 cut(s)	710, 1053, 1140, 1472, 1608, 1668, 1847
FspBI	CTAG	7 cut(s)	437, 537, 740, 848, 944, 1025, 2086
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	7 cut(s)	710, 1053, 1140, 1472, 1608, 1668, 1847
GsaI	CCCAGC	1 cut(s)	1449
GsuI	CTGGAG	1 cut(s)	1694
HaeIII	GGCC	3 cut(s)	116, 1532, 1871
HapII	CCGG	6 cut(s)	113, 120, 684, 764, 1533, 1791
HgaI	GACGC	2 cut(s)	418, 683
HhaI	GCGC	1 cut(s)	520
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	6 cut(s)	404, 498, 1227, 1459, 1706, 1956
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HincII	GTYRAC	1 cut(s)	1542
HindII	GTYRAC	1 cut(s)	1542
HindIII	AAGCTT	2 cut(s)	1394, 1431
HinfI	GANTC	7 cut(s)	143, 316, 1478, 1678, 1744, 1814, 2056
HpaI	GTTAAC	1 cut(s)	1542
HpaII	CCGG	6 cut(s)	113, 120, 684, 764, 1533, 1791
HphI	GGTGA	9 cut(s)	159, 346, 358, 634, 829, 947, 1076, 1172, 1337
Hpy166II	GTNNAC	7 cut(s)	147, 582, 619, 786, 1280, 1542, 1708
Hpy188I	TCNGA	8 cut(s)	97, 135, 281, 606, 633, 673, 1749, 1929
Hpy188III	TCNNGA	9 cut(s)	437, 722, 728, 740, 884, 905, 1456, 1568, 1741
Hpy8I	GTNNAC	7 cut(s)	147, 582, 619, 786, 1280, 1542, 1708
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	7 cut(s)	174, 424, 818, 1201, 1259, 1973, 2005
HpyCH4III	ACNGT	5 cut(s)	151, 171, 602, 890, 901
HpyCH4IV	ACGT	2 cut(s)	1068, 1401
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 332, 1139, 1148, 1592
HpyF3I	CTNAG	1 cut(s)	1866
HpySE526I	ACGT	2 cut(s)	1068, 1401
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	6 cut(s)	404, 498, 1227, 1459, 1706, 1956
HspAI	GCGC	1 cut(s)	518
Ksp22I	TGATCA	2 cut(s)	663, 1342
KspAI	GTTAAC	1 cut(s)	1542
KspI	CCGCGG	1 cut(s)	1493
Kzo9I	GATC	9 cut(s)	281, 663, 724, 937, 1342, 1426, 1507, 1755, 2070
LmnI	GCTCC	1 cut(s)	1298
Lsp1109I	GCAGC	4 cut(s)	1483, 1594, 1679, 1833
LweI	GCATC	4 cut(s)	1201, 1664, 1694, 1939
MaeI	CTAG	7 cut(s)	437, 537, 740, 848, 944, 1025, 2086
MaeII	ACGT	2 cut(s)	1068, 1401
MaeIII	GTNAC	5 cut(s)	419, 430, 1064, 1285, 1942
MalI	GATC	9 cut(s)	283, 665, 726, 939, 1344, 1428, 1509, 1757, 2072
MbiI	CCGCTC	1 cut(s)	1055
MboI	GATC	9 cut(s)	281, 663, 724, 937, 1342, 1426, 1507, 1755, 2070
MboII	GAAGA	8 cut(s)	25, 211, 402, 457, 747, 1175, 1729, 2009
MfeI	CAATTG	1 cut(s)	1215
MflI	RGATCY	3 cut(s)	281, 724, 2070
MhlI	GDGCHC	1 cut(s)	1710
MluCI	AATT	7 cut(s)	1080, 1124, 1215, 1516, 1547, 1764, 1836
MlyI	GAGTC	4 cut(s)	152, 310, 1753, 1823
MmeI	TCCRAC	2 cut(s)	312, 696
Mph1103I	ATGCAT	1 cut(s)	1954
MroXI	GAANNNNTTC	1 cut(s)	1253
MseI	TTAA	6 cut(s)	587, 1176, 1422, 1463, 1541, 2016
MspA1I	CMGCKG	1 cut(s)	1492
MspI	CCGG	6 cut(s)	113, 120, 684, 764, 1533, 1791
MspR9I	CCNGG	3 cut(s)	685, 714, 764
MunI	CAATTG	1 cut(s)	1215
Mva1269I	GAATGC	3 cut(s)	1000, 1522, 1597
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	3 cut(s)	518, 1492, 1742
MwoI	GCNNNNNNNGC	5 cut(s)	113, 332, 1139, 1148, 1592
NciI	CCSGG	2 cut(s)	685, 764
NcoI	CCATGG	1 cut(s)	1223
NdeI	CATATG	1 cut(s)	1111
NdeII	GATC	9 cut(s)	281, 663, 724, 937, 1342, 1426, 1507, 1755, 2070
NheI	GCTAGC	1 cut(s)	847
NlaIII	CATG	6 cut(s)	404, 498, 1227, 1459, 1706, 1956
NlaIV	GGNNCC	1 cut(s)	2072
NmeAIII	GCCGAG	3 cut(s)	166, 405, 1583
NmuCI	GTSAC	3 cut(s)	419, 430, 1064
NruI	TCGCGA	1 cut(s)	1742
NsiI	ATGCAT	1 cut(s)	1954
NspI	RCATGY	2 cut(s)	498, 1706
NspV	TTCGAA	1 cut(s)	2054
PaeR7I	CTCGAG	1 cut(s)	728
PagI	TCATGA	1 cut(s)	1455
PceI	AGGCCT	1 cut(s)	1871
PcsI	WCGNNNNNNNCGW	1 cut(s)	629
PctI	GAATGC	3 cut(s)	1000, 1522, 1597
PdmI	GAANNNNTTC	1 cut(s)	1253
PfeI	GAWTC	3 cut(s)	1478, 1678, 2056
PinAI	ACCGGT	1 cut(s)	1790
PkrI	GCNGC	7 cut(s)	711, 1054, 1141, 1473, 1609, 1669, 1848
PleI	GAGTC	4 cut(s)	151, 310, 1752, 1822
PpsI	GAGTC	4 cut(s)	151, 310, 1752, 1822
PpuMI	RGGWCCY	1 cut(s)	1021
PshAI	GACNNNNGTC	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	1021
Psp6I	CCWGG	1 cut(s)	712
PspFI	CCCAGC	1 cut(s)	1445
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	1 cut(s)	2072
PspPI	GGNCC	2 cut(s)	1021, 1530
PspPPI	RGGWCCY	1 cut(s)	1021
PstNI	CAGNNNCTG	1 cut(s)	1846
PsuI	RGATCY	3 cut(s)	281, 724, 2070
RruI	TCGCGA	1 cut(s)	1742
RsaI	GTAC	6 cut(s)	234, 581, 620, 920, 1029, 1576
RsaNI	GTAC	6 cut(s)	233, 580, 619, 919, 1028, 1575
SacII	CCGCGG	1 cut(s)	1493
SaqAI	TTAA	6 cut(s)	587, 1176, 1422, 1463, 1541, 2016
SatI	GCNGC	7 cut(s)	710, 1053, 1140, 1472, 1608, 1668, 1847
Sau3AI	GATC	9 cut(s)	281, 663, 724, 937, 1342, 1426, 1507, 1755, 2070
Sau96I	GGNCC	2 cut(s)	1021, 1530
SchI	GAGTC	4 cut(s)	152, 310, 1753, 1823
ScrFI	CCNGG	3 cut(s)	685, 714, 764
SduI	GDGCHC	1 cut(s)	1710
SfaNI	GCATC	4 cut(s)	1201, 1664, 1694, 1939
SfcI	CTRYAG	1 cut(s)	1627
Sfr274I	CTCGAG	1 cut(s)	728
Sfr303I	CCGCGG	1 cut(s)	1493
SfuI	TTCGAA	1 cut(s)	2054
SgrBI	CCGCGG	1 cut(s)	1493
SinI	GGWCC	1 cut(s)	1021
SlaI	CTCGAG	1 cut(s)	728
SmlI	CTYRAG	3 cut(s)	720, 728, 914
SmoI	CTYRAG	3 cut(s)	720, 728, 914
Sse9I	AATT	7 cut(s)	1080, 1124, 1215, 1516, 1547, 1764, 1836
SseBI	AGGCCT	1 cut(s)	1871
SspI	AATATT	1 cut(s)	260
SspMI	CTAG	7 cut(s)	437, 537, 740, 848, 944, 1025, 2086
StuI	AGGCCT	1 cut(s)	1871
StyD4I	CCNGG	3 cut(s)	683, 712, 762
StyI	CCWWGG	5 cut(s)	943, 1134, 1223, 1711, 1974
TaaI	ACNGT	5 cut(s)	151, 171, 602, 890, 901
TaiI	ACGT	2 cut(s)	1071, 1404
TaqI	TCGA	7 cut(s)	594, 729, 1004, 1085, 1506, 1817, 2054
TasI	AATT	7 cut(s)	1080, 1124, 1215, 1516, 1547, 1764, 1836
TatI	WGTACW	6 cut(s)	232, 579, 618, 918, 1027, 1574
TauI	GCSGC	3 cut(s)	712, 1055, 1142
TfiI	GAWTC	3 cut(s)	1478, 1678, 2056
Tru1I	TTAA	6 cut(s)	587, 1176, 1422, 1463, 1541, 2016
Tru9I	TTAA	6 cut(s)	587, 1176, 1422, 1463, 1541, 2016
TseFI	GTSAC	3 cut(s)	419, 430, 1064
TseI	GCWGC	4 cut(s)	1471, 1607, 1667, 1846
Tsp45I	GTSAC	3 cut(s)	419, 430, 1064
TspDTI	ATGAA	7 cut(s)	49, 1098, 1128, 1278, 1430, 1444, 1472
TspGWI	ACGGA	1 cut(s)	1961
VneI	GTGCAC	1 cut(s)	1706
VpaK11BI	GGWCC	1 cut(s)	1021
XagI	CCTNNNNNAGG	2 cut(s)	473, 1028
XapI	RAATTY	2 cut(s)	1547, 1836
XbaI	TCTAGA	2 cut(s)	436, 739
XceI	RCATGY	2 cut(s)	498, 1706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1355
XhoI	CTCGAG	1 cut(s)	728
XmaJI	CCTAGG	1 cut(s)	943
XmnI	GAANNNNTTC	1 cut(s)	1253
XspI	CTAG	7 cut(s)	437, 537, 740, 848, 944, 1025, 2086
Zsp2I	ATGCAT	1 cut(s)	1954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.