Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Reverse (-)

36437755 .. 36439802

Gene Structure 2048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGATGACTATGCATGTGGCTGTTTTGGAGGGTGTTAAGTATAGGAACATTGATGGTGAGCTTGTTGGTGTTGTAGGGGACTCGTGGGTGTTGAGGCCAGAGCCTGTTTCGGTTACTTGCCATTCGATTAAGGGTGTTAAGGAAGAGTCGAAAAGTGAGATCATGGCTGCATTGGCTTTGATTGCTGAGGAGGTGGGTTATGTTGATGTGATTCTGGCAATTGAGAAGTACTTGAGGGATGCAATTGAGCCATGGTTTTGGATGGGACTTTTGGTGGGAATGGGTTTTTGTATGAGAGTGAATGGGGTGGCATTGTTACTAAACAAGGATCATTGGATTCTGGTGCAGATGTCGGGTTTGGAGGAATGCCAACATACAAGTTCCTATACTAACAACATTAATGATCACCATTATCACTTGGGTTACTTTCCGTATGGCATTTCAGTGCTCGCTAAGATTGACTTGGAATGGGGGATGAAGTATAAGCCTCAAAGGAGGTCAGGTTCGAGTTATCCAAGGCTGAGGTGCTTTGATTTGTATAAACTACATTCTTGGGCAGGAGGGGTGACTGAATTTGGAGATAGCAGGAATCAGGAGAGCACTAGCGAGGTGGTGAATGCTAACTACTCAGCTGCATTGTTGGGATTAGCATATGGAGACACTGATCTTGTGGCCACAGGGTCAATGCTTGCAGCATTGGAAATCCAGGCAGCTCAAATGTGGTGCCATGTAAGAGAGGGTGATAACATTTATGCACCAGATTACACAAAGGAAAGTCGGGTAGTTGGAGTACTGCTGTGGGCTAATAAGAGAAACAGTAATCTTTGGTTTGCGCCTGCACAGCGGAGAGAGTGCCTGCTTGGAATCCAGCTGCTGCCTATTGTACCTATTACTGAGGAATTGTTCTCTGATGTTGGCTATGTTAGGGAACTTGTGAAGTGGACTGAACCGGCTCTTATTAGAGAGGGTGTTGGGGAAGGATGGAAAGGGTTTGTGTACTCTTTGCAAGGGATTTATGACAAGAATGGTGCTTTGAATGGTCACGATGATGGCAACTCGCTTACGAATCTATTATGGTGGATCGACAGCAGAGGTGAGGAAAGAGATGGATGCCAAGTCGGAGAGAAGATTTGCTCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

380

Amino Acids

42.61

Weight (kDa)

5.22

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	124 - 347	1.5e-58	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	723
AciI	CCGC	1 cut(s)	844
AclWI	GGATC	2 cut(s)	336, 1088
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	1 cut(s)	572
AfaI	GTAC	4 cut(s)	230, 792, 885, 998
AgsI	TTSAA	1 cut(s)	1036
AjnI	CCWGG	1 cut(s)	705
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	4 cut(s)	61, 632, 713, 871
AluI	AGCT	4 cut(s)	61, 632, 713, 871
Alw21I	GWGCWC	2 cut(s)	450, 602
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	2 cut(s)	336, 1088
AlwNI	CAGNNNCTG	2 cut(s)	104, 874
AoxI	GGCC	2 cut(s)	95, 672
ApeKI	GCWGC	6 cut(s)	167, 632, 692, 710, 871, 874
ApoI	RAATTY	1 cut(s)	572
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	835
AsuHPI	GGTGA	6 cut(s)	68, 398, 577, 625, 752, 1106
BalI	TGGCCA	1 cut(s)	674
BanI	GGYRCC	1 cut(s)	723
BauI	CACGAG	1 cut(s)	82
Bbv12I	GWGCWC	2 cut(s)	450, 602
BbvCI	CCTCAGC	2 cut(s)	186, 521
BbvI	GCAGC	6 cut(s)	154, 619, 704, 722, 858, 861
BccI	CCATC	5 cut(s)	47, 256, 975, 1043, 1100
BciT130I	CCWGG	1 cut(s)	707
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	1 cut(s)	603
BisI	GCNGC	6 cut(s)	168, 633, 693, 711, 872, 875
BlsI	GCNGC	6 cut(s)	169, 634, 694, 712, 873, 876
BmcAI	AGTACT	2 cut(s)	230, 792
Bme1390I	CCNGG	1 cut(s)	707
BmiI	GGNNCC	1 cut(s)	725
BmrFI	CCNGG	1 cut(s)	707
BmsI	GCATC	2 cut(s)	229, 1100
Bpu10I	CCTNAGC	2 cut(s)	186, 521
BpuEI	CTTGAG	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	251, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bse118I	RCCGGY	1 cut(s)	949
BseBI	CCWGG	1 cut(s)	707
BseDI	CCNNGG	2 cut(s)	251, 515
BseGI	GGATG	5 cut(s)	244, 267, 480, 986, 1115
BseMII	CTCAG	4 cut(s)	177, 512, 642, 885
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	6 cut(s)	154, 619, 704, 722, 858, 861
BsgI	GTGCAG	2 cut(s)	365, 822
BshFI	GGCC	2 cut(s)	97, 674
BshNI	GGYRCC	1 cut(s)	723
BsiHKAI	GWGCWC	2 cut(s)	450, 602
BsiSI	CCGG	1 cut(s)	950
BslFI	GGGAC	2 cut(s)	92, 279
BsmAI	GTCTC	1 cut(s)	651
BsmFI	GGGAC	2 cut(s)	92, 279
BsmI	GAATGC	2 cut(s)	371, 622
BsnI	GGCC	2 cut(s)	97, 674
Bsp1286I	GDGCHC	2 cut(s)	450, 602
Bsp143I	GATC	5 cut(s)	159, 328, 403, 664, 1080
Bsp19I	CCATGG	1 cut(s)	251
BspACI	CCGC	1 cut(s)	844
BspANI	GGCC	2 cut(s)	97, 674
BspCNI	CTCAG	4 cut(s)	178, 513, 641, 886
BspLI	GGNNCC	1 cut(s)	725
BspPI	GGATC	2 cut(s)	336, 1088
BspT107I	GGYRCC	1 cut(s)	723
BsrFI	RCCGGY	1 cut(s)	949
BssAI	RCCGGY	1 cut(s)	949
BssECI	CCNNGG	2 cut(s)	251, 515
BssMI	GATC	5 cut(s)	159, 328, 403, 664, 1080
BssSI	CACGAG	1 cut(s)	82
BssT1I	CCWWGG	2 cut(s)	251, 515
Bst2BI	CACGAG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	707
Bst4CI	ACNGT	1 cut(s)	818
Bst6I	CTCTTC	1 cut(s)	138
BstC8I	GCNNGC	4 cut(s)	450, 690, 837, 857
BstDEI	CTNAG	6 cut(s)	186, 453, 521, 628, 894, 1135
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	5 cut(s)	244, 267, 480, 986, 1115
BstHHI	GCGC	1 cut(s)	835
BstKTI	GATC	5 cut(s)	162, 331, 406, 667, 1083
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	5 cut(s)	159, 328, 403, 664, 1080
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 841
BstNI	CCWGG	1 cut(s)	707
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	705
BstV1I	GCAGC	6 cut(s)	154, 619, 704, 722, 858, 861
BstXI	CCANNNNNNTGG	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	97, 674
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	5 cut(s)	244, 267, 480, 986, 1115
BtsIMutI	CAGTG	2 cut(s)	450, 660
Cac8I	GCNNGC	4 cut(s)	450, 690, 837, 857
CaiI	CAGNNNCTG	2 cut(s)	104, 874
CfoI	GCGC	1 cut(s)	835
Cfr10I	RCCGGY	1 cut(s)	949
Csp6I	GTAC	4 cut(s)	229, 791, 884, 997
CviAII	CATG	4 cut(s)	14, 163, 252, 728
CviQI	GTAC	4 cut(s)	229, 791, 884, 997
DdeI	CTNAG	6 cut(s)	186, 453, 521, 628, 894, 1135
DpnI	GATC	5 cut(s)	161, 330, 405, 666, 1082
DpnII	GATC	5 cut(s)	159, 328, 403, 664, 1080
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	2 cut(s)	251, 515
EcoRII	CCWGG	1 cut(s)	705
EcoT14I	CCWWGG	2 cut(s)	251, 515
EcoT22I	ATGCAT	1 cut(s)	15
ErhI	CCWWGG	2 cut(s)	251, 515
FaeI	CATG	4 cut(s)	17, 166, 255, 731
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	2 cut(s)	92, 279
FatI	CATG	4 cut(s)	13, 162, 251, 727
FauNDI	CATATG	1 cut(s)	652
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	6 cut(s)	168, 633, 693, 711, 872, 875
FokI	GGATG	5 cut(s)	251, 274, 487, 993, 1122
Fsp4HI	GCNGC	6 cut(s)	168, 633, 693, 711, 872, 875
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	1 cut(s)	834
GluI	GCNGC	6 cut(s)	168, 633, 693, 711, 872, 875
HaeIII	GGCC	2 cut(s)	97, 674
HapII	CCGG	1 cut(s)	950
HhaI	GCGC	1 cut(s)	835
Hin1II	CATG	4 cut(s)	17, 166, 255, 731
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HinfI	GANTC	7 cut(s)	80, 146, 211, 337, 589, 864, 1066
HpaII	CCGG	1 cut(s)	950
HphI	GGTGA	6 cut(s)	68, 398, 577, 625, 752, 1106
Hpy166II	GTNNAC	2 cut(s)	942, 997
Hpy188I	TCNGA	2 cut(s)	910, 1121
Hpy188III	TCNNGA	2 cut(s)	593, 1043
Hpy8I	GTNNAC	2 cut(s)	942, 997
HpyAV	CCTTC	1 cut(s)	971
HpyCH4III	ACNGT	1 cut(s)	818
HpyCH4V	TGCA	9 cut(s)	13, 170, 242, 346, 635, 692, 755, 839, 1006
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 841
HpyF3I	CTNAG	6 cut(s)	186, 453, 521, 628, 894, 1135
Hsp92II	CATG	4 cut(s)	17, 166, 255, 731
HspAI	GCGC	1 cut(s)	833
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	5 cut(s)	159, 328, 403, 664, 1080
Lsp1109I	GCAGC	6 cut(s)	154, 619, 704, 722, 858, 861
LweI	GCATC	2 cut(s)	229, 1100
MaeI	CTAG	1 cut(s)	603
MaeIII	GTNAC	5 cut(s)	112, 315, 422, 565, 1040
MalI	GATC	5 cut(s)	161, 330, 405, 666, 1082
MboI	GATC	5 cut(s)	159, 328, 403, 664, 1080
MboII	GAAGA	2 cut(s)	155, 1138
MfeI	CAATTG	2 cut(s)	219, 243
MhlI	GDGCHC	2 cut(s)	450, 602
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	4 cut(s)	219, 243, 572, 899
MluNI	TGGCCA	1 cut(s)	674
MlyI	GAGTC	2 cut(s)	74, 155
MmeI	TCCRAC	2 cut(s)	766, 1099
Mox20I	TGGCCA	1 cut(s)	674
Mph1103I	ATGCAT	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	4 cut(s)	36, 129, 138, 399
MslI	CAYNNNNRTG	2 cut(s)	443, 1047
Msp20I	TGGCCA	1 cut(s)	674
MspA1I	CMGCKG	3 cut(s)	632, 844, 871
MspI	CCGG	1 cut(s)	950
MspR9I	CCNGG	1 cut(s)	707
MunI	CAATTG	2 cut(s)	219, 243
Mva1269I	GAATGC	2 cut(s)	371, 622
MvaI	CCWGG	1 cut(s)	707
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 841
NcoI	CCATGG	1 cut(s)	251
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	5 cut(s)	159, 328, 403, 664, 1080
NlaIII	CATG	4 cut(s)	17, 166, 255, 731
NlaIV	GGNNCC	1 cut(s)	725
NmuCI	GTSAC	2 cut(s)	565, 1040
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	17
PctI	GAATGC	2 cut(s)	371, 622
PfeI	GAWTC	5 cut(s)	211, 337, 589, 864, 1066
PkrI	GCNGC	6 cut(s)	169, 634, 694, 712, 873, 876
PleI	GAGTC	2 cut(s)	74, 154
PpsI	GAGTC	2 cut(s)	74, 154
PshBI	ATTAAT	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	705
PspN4I	GGNNCC	1 cut(s)	725
PstNI	CAGNNNCTG	2 cut(s)	104, 874
PvuII	CAGCTG	2 cut(s)	632, 871
RsaI	GTAC	4 cut(s)	230, 792, 885, 998
RsaNI	GTAC	4 cut(s)	229, 791, 884, 997
RseI	CAYNNNNRTG	2 cut(s)	443, 1047
SaqAI	TTAA	4 cut(s)	36, 129, 138, 399
SatI	GCNGC	6 cut(s)	168, 633, 693, 711, 872, 875
Sau3AI	GATC	5 cut(s)	159, 328, 403, 664, 1080
ScaI	AGTACT	2 cut(s)	230, 792
SchI	GAGTC	2 cut(s)	74, 155
ScrFI	CCNGG	1 cut(s)	707
SduI	GDGCHC	2 cut(s)	450, 602
SfaNI	GCATC	2 cut(s)	229, 1100
SmiMI	CAYNNNNRTG	2 cut(s)	443, 1047
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	4 cut(s)	219, 243, 572, 899
SsiI	CCGC	1 cut(s)	844
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	705
StyI	CCWWGG	2 cut(s)	251, 515
TaaI	ACNGT	1 cut(s)	818
TaqI	TCGA	4 cut(s)	125, 149, 506, 1083
TasI	AATT	4 cut(s)	219, 243, 572, 899
TatI	WGTACW	3 cut(s)	228, 790, 996
TfiI	GAWTC	5 cut(s)	211, 337, 589, 864, 1066
Tru1I	TTAA	4 cut(s)	36, 129, 138, 399
Tru9I	TTAA	4 cut(s)	36, 129, 138, 399
TscAI	CASTG	2 cut(s)	450, 667
TseFI	GTSAC	2 cut(s)	565, 1040
TseI	GCWGC	6 cut(s)	167, 632, 692, 710, 871, 874
Tsp45I	GTSAC	2 cut(s)	565, 1040
TspDTI	ATGAA	1 cut(s)	491
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	2 cut(s)	450, 667
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	1 cut(s)	572
XceI	RCATGY	1 cut(s)	17
XspI	CTAG	1 cut(s)	603
ZrmI	AGTACT	2 cut(s)	230, 792
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.