Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

12781275 .. 12788161

Gene Structure 6887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022827

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTGGAGGGAGAGCACTAGCGAGGTGGTGAATGCTAACTACTCAGCTGCATTGTTGGGATTAGCATATGGAGACACTGATCTTGTGGCCACAGGGTCAATGCTTGCAGCATTGGAAATCCAGGCAGCTCAAATGTGGTGCCATGTAAGAGAGGGTGATAACATTTATGCACCAGATTACACAAAGGAAAGTCGGGTAGTTGGAGTACTGCTGTGGGCTAATAAGAGAAACAGTAATCTTTGGTTTGCGCCTGCACAGCGGAGAGAGTGCCTGCTTGGAATCCAGCTGCTGCCTATTGTACCTATTACTGAGGAATTGTTCTCTGATGTTAGCTATGTTAGGGAACTTGTGAAGTGGACTGAACCGGCTCTTATTAGAGAGGGTGTTGGGGAAGGATGGAAAGGGTTTGTGTACTCTTTGCAAGGGATTTATGACAAGAATGGTGCTTTGAATGGTCACGATGATGGCAACTCGCTTACGAATCTGTTATGGTGGATCGACAGCAGAGGTGAGGAAAGAGATGGATGCCAAGTCGGAGAGAAGATTTGCTCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

186

Amino Acids

20.66

Weight (kDa)

4.72

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	3 - 152	6.5e-33	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	138
AciI	CCGC	1 cut(s)	259
AclWI	GGATC	1 cut(s)	503
AcoI	YGGCCR	1 cut(s)	87
AfaI	GTAC	3 cut(s)	207, 300, 413
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	4 cut(s)	47, 128, 286, 333
AluI	AGCT	4 cut(s)	47, 128, 286, 333
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	503
AlwNI	CAGNNNCTG	1 cut(s)	289
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	5 cut(s)	47, 107, 125, 286, 289
AspLEI	GCGC	1 cut(s)	250
AsuHPI	GGTGA	3 cut(s)	40, 167, 521
BalI	TGGCCA	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	5 cut(s)	34, 119, 137, 273, 276
BccI	CCATC	3 cut(s)	390, 458, 515
BciT130I	CCWGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	5 cut(s)	48, 108, 126, 287, 290
BlsI	GCNGC	5 cut(s)	49, 109, 127, 288, 291
BmcAI	AGTACT	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	515
Bse118I	RCCGGY	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	122
BseGI	GGATG	2 cut(s)	401, 530
BseMII	CTCAG	2 cut(s)	57, 300
BseXI	GCAGC	5 cut(s)	34, 119, 137, 273, 276
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	79, 495
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	56, 301
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	364
BssMI	GATC	2 cut(s)	79, 495
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	105, 252, 272
BstDEI	CTNAG	3 cut(s)	43, 309, 550
BstF5I	GGATG	2 cut(s)	401, 530
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	2 cut(s)	82, 498
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	2 cut(s)	79, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstV1I	GCAGC	5 cut(s)	34, 119, 137, 273, 276
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	401, 530
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	3 cut(s)	105, 252, 272
CaiI	CAGNNNCTG	1 cut(s)	289
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	364
Csp6I	GTAC	3 cut(s)	206, 299, 412
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	7 cut(s)	47, 89, 128, 218, 286, 333, 368
CviKI_1	RGCY	7 cut(s)	47, 89, 128, 218, 286, 333, 368
CviQI	GTAC	3 cut(s)	206, 299, 412
DdeI	CTNAG	3 cut(s)	43, 309, 550
DpnI	GATC	2 cut(s)	81, 497
DpnII	GATC	2 cut(s)	79, 495
EaeI	YGGCCR	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	146
FaiI	YATR	7 cut(s)	67, 69, 144, 168, 336, 432, 490
FatI	CATG	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	5 cut(s)	48, 108, 126, 287, 290
FokI	GGATG	2 cut(s)	408, 537
Fsp4HI	GCNGC	5 cut(s)	48, 108, 126, 287, 290
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	5 cut(s)	48, 108, 126, 287, 290
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	365
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	2 cut(s)	279, 481
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	3 cut(s)	40, 167, 521
Hpy166II	GTNNAC	2 cut(s)	357, 412
Hpy188I	TCNGA	2 cut(s)	325, 536
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	2 cut(s)	357, 412
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	5 cut(s)	50, 107, 170, 254, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	3 cut(s)	43, 309, 550
Hsp92II	CATG	1 cut(s)	146
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	79, 495
LpnPI	CCDG	8 cut(s)	78, 107, 134, 186, 264, 284, 296, 378
Lsp1109I	GCAGC	5 cut(s)	34, 119, 137, 273, 276
LweI	GCATC	1 cut(s)	515
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	2 cut(s)	81, 497
MboI	GATC	2 cut(s)	79, 495
MboII	GAAGA	1 cut(s)	553
MhlI	GDGCHC	1 cut(s)	17
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	181, 514
MnlI	CCTC	6 cut(s)	16, 145, 304, 373, 500, 505
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	462
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	3 cut(s)	47, 259, 286
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	256
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	2 cut(s)	79, 495
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	455
PctI	GAATGC	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	279, 481
PkrI	GCNGC	5 cut(s)	49, 109, 127, 288, 291
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	289
PvuII	CAGCTG	2 cut(s)	47, 286
RsaI	GTAC	3 cut(s)	207, 300, 413
RsaNI	GTAC	3 cut(s)	206, 299, 412
RseI	CAYNNNNRTG	1 cut(s)	462
SatI	GCNGC	5 cut(s)	48, 108, 126, 287, 290
Sau3AI	GATC	2 cut(s)	79, 495
ScaI	AGTACT	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	7 cut(s)	27, 49, 130, 288, 304, 335, 511
SfaNI	GCATC	1 cut(s)	515
SmiMI	CAYNNNNRTG	1 cut(s)	462
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	1 cut(s)	259
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	498
TasI	AATT	1 cut(s)	314
TatI	WGTACW	2 cut(s)	205, 411
TfiI	GAWTC	2 cut(s)	279, 481
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	5 cut(s)	47, 107, 125, 286, 289
Tsp45I	GTSAC	1 cut(s)	455
TspRI	CASTG	1 cut(s)	82
XspI	CTAG	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.