Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022540.1

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 455

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022540.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 454 bp

ctgccggaatctgacccacaattcgagtcggttcttgatcggttcagctcttgctaccctgtttccggtgaggctgtgttcacaaagccgtttgctttggagtataaatgggagaagaaagggtggggagacttgcttatgctggctcatcctctacatttaaagcttattgatggtgacgattctgatattactgttttggagaatttcaagtacaaaagcattgatggtgatcttgttggtgttgtgggggattcatgggtgttgaagcctgaccctgtttcggttacttggcattcgactaaaggtatcaaacaagactcatattctgagataatatctgcacttattaaagatgttgaggctttaagttctacaccaattgcaactacttcttcatatttttatgggaagttgattgctagagctgcgaggttggctttgattgctgagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

151

Amino Acids

16.71

Weight (kDa)

4.92

Isoelectric Point (pI)

24.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	65, 283
AgsI	TTSAA	2 cut(s)	211, 268
AluBI	AGCT	3 cut(s)	48, 166, 428
AluI	AGCT	3 cut(s)	48, 166, 428
Alw26I	GTCTC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	205
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AsuHPI	GGTGA	3 cut(s)	80, 188, 242
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	167, 221
BceAI	ACGGC	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	423
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 283
Bse8I	GATNNNNATC	1 cut(s)	231
BseGI	GGATG	1 cut(s)	148
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	65, 283
BseMII	CTCAG	2 cut(s)	321, 441
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	5, 66
BslI	CCNNNNNNNGG	2 cut(s)	65, 283
BsmAI	GTCTC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	37, 232
BspCNI	CTCAG	2 cut(s)	322, 442
BssMI	GATC	2 cut(s)	37, 232
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	330, 450
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	2 cut(s)	40, 235
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	37, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 437, 446
BstV1I	GCAGC	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	258
CviJI	RGCY	9 cut(s)	48, 74, 88, 146, 166, 271, 365, 428, 440
CviKI_1	RGCY	9 cut(s)	48, 74, 88, 146, 166, 271, 365, 428, 440
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	330, 450
DpnI	GATC	2 cut(s)	39, 234
DpnII	GATC	2 cut(s)	37, 232
DraI	TTTAAA	1 cut(s)	162
FaeI	CATG	1 cut(s)	261
FaiI	YATR	6 cut(s)	105, 140, 259, 325, 400, 408
FatI	CATG	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	1 cut(s)	429
HapII	CCGG	2 cut(s)	5, 66
Hin1II	CATG	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	5 cut(s)	8, 26, 182, 254, 320
HpaII	CCGG	2 cut(s)	5, 66
HphI	GGTGA	3 cut(s)	80, 188, 242
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	3 cut(s)	13, 187, 331
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	81
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	344, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 437, 446
HpyF3I	CTNAG	2 cut(s)	330, 450
Hsp92II	CATG	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	37, 232
LpnPI	CCDG	6 cut(s)	18, 72, 79, 128, 285, 291
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	176, 286
MalI	GATC	2 cut(s)	39, 234
MboI	GATC	2 cut(s)	37, 232
MboII	GAAGA	2 cut(s)	127, 387
MfeI	CAATTG	1 cut(s)	381
MluCI	AATT	3 cut(s)	20, 205, 381
MlyI	GAGTC	2 cut(s)	35, 314
MnlI	CCTC	5 cut(s)	64, 162, 355, 426, 445
MseI	TTAA	3 cut(s)	161, 351, 368
MspI	CCGG	2 cut(s)	5, 66
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	295
MwoI	GCNNNNNNNGC	3 cut(s)	428, 437, 446
NdeII	GATC	2 cut(s)	37, 232
NlaIII	CATG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	176
PctI	GAATGC	1 cut(s)	295
PfeI	GAWTC	3 cut(s)	8, 182, 254
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	2 cut(s)	34, 314
PpsI	GAGTC	2 cut(s)	34, 314
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	161, 351, 368
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	37, 232
SchI	GAGTC	2 cut(s)	35, 314
SetI	ASST	5 cut(s)	50, 168, 310, 430, 437
Sse9I	AATT	3 cut(s)	20, 205, 381
SspMI	CTAG	1 cut(s)	423
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	24, 299
TasI	AATT	3 cut(s)	20, 205, 381
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	3 cut(s)	8, 182, 254
Tru1I	TTAA	3 cut(s)	161, 351, 368
Tru9I	TTAA	3 cut(s)	161, 351, 368
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	246, 387
XapI	RAATTY	1 cut(s)	205
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.