Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Reverse (-)

73205922 .. 73206407

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG552700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCTTGCGGCATTGGAAATTAAAGCTGCTCAAATGTGGTGGCAAGTAAAAGAGGGAGATAGCATTTATGAGCCAGATTTCACTAGGGGAAATAGGGTAGTTGGAGTGCTATGGGCTAATAAGAGGGACAGCGGACTGTGGTTTGCTCCTCCGAAGTGGAAAGAGTGCCAGCTTGGAATCCAACTGCTACCCATTTTACCTACCTTTGAGGTATTGTTCTCTGATGTTGCCTTTGTTAGGCAACTTGTGGAGTGGACAGAACCAGCTCTGAGTAGAGAGGGTGTTGGGGAAGGATGGAAAGGGTTTGTCTATACTTTGCAAGGGATTTACGACAAACAAGGCGCTTTGGAGAAGATTAGGAACTTGAAGGGTTATGATGATTGGAACTCGCTCACTAATCTGTTATGGTGGATCCATAGCAGAGGTGAGGAAGGAGATGGTTGTGGAATTGGAGAGAACATATGTTGGTTTAAGCACTGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

161

Amino Acids

18.54

Weight (kDa)

5.4

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	2 - 137	8.8e-29	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	8, 132
AclWI	GGATC	2 cut(s)	406, 419
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	367
AluBI	AGCT	3 cut(s)	26, 172, 266
AluI	AGCT	3 cut(s)	26, 172, 266
AlwI	GGATC	2 cut(s)	406, 419
ApeKI	GCWGC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	437
BamHI	GGATCC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	2 cut(s)	288, 431
BfaI	CTAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	345
BisI	GCNGC	2 cut(s)	9, 27
BlsI	GCNGC	2 cut(s)	10, 28
BmiI	GGNNCC	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	2 cut(s)	8, 132
BspCNI	CTCAG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	413
BspPI	GGATC	2 cut(s)	406, 419
BssMI	GATC	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	138, 479
BstC8I	GCNNGC	2 cut(s)	6, 170
BstDEI	CTNAG	1 cut(s)	269
BstENI	CCTNNNNNAGG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	299
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	1 cut(s)	414
BstMBI	GATC	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	299
BtsIMutI	CAGTG	2 cut(s)	475, 481
Cac8I	GCNNGC	2 cut(s)	6, 170
CfoI	GCGC	1 cut(s)	344
CspCI	CAANNNNNGTGG	2 cut(s)	20, 55
CviJI	RGCY	5 cut(s)	26, 73, 116, 172, 266
CviKI_1	RGCY	5 cut(s)	26, 73, 116, 172, 266
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
EcoNI	CCTNNNNNAGG	1 cut(s)	235
FaiI	YATR	8 cut(s)	69, 112, 312, 375, 406, 417, 461, 463
FaqI	GGGAC	1 cut(s)	140
FauNDI	CATATG	1 cut(s)	461
Fnu4HI	GCNGC	2 cut(s)	9, 27
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	9, 27
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	2 cut(s)	9, 27
HaeII	RGCGCY	1 cut(s)	345
HhaI	GCGC	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HinfI	GANTC	1 cut(s)	177
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	3 cut(s)	153, 223, 270
Hpy8I	GTNNAC	1 cut(s)	255
HpyAV	CCTTC	3 cut(s)	284, 361, 425
HpyCH4III	ACNGT	2 cut(s)	138, 479
HpyCH4V	TGCA	1 cut(s)	319
HpyF3I	CTNAG	1 cut(s)	269
HspAI	GCGC	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	3 cut(s)	87, 182, 276
Lsp1109I	GCAGC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	1 cut(s)	364
MflI	RGATCY	1 cut(s)	411
MluCI	AATT	2 cut(s)	18, 447
MmeI	TCCRAC	2 cut(s)	82, 205
MnlI	CCTC	7 cut(s)	46, 117, 159, 202, 271, 416, 421
MseI	TTAA	2 cut(s)	21, 471
MspA1I	CMGCKG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	461
NdeII	GATC	1 cut(s)	411
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	10, 28
PspN4I	GGNNCC	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	21, 471
SatI	GCNGC	2 cut(s)	9, 27
Sau3AI	GATC	1 cut(s)	411
SetI	ASST	7 cut(s)	28, 174, 202, 206, 213, 268, 427
Sse9I	AATT	2 cut(s)	18, 447
SsiI	CCGC	2 cut(s)	8, 132
SspMI	CTAG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	138, 479
TasI	AATT	2 cut(s)	18, 447
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	2 cut(s)	21, 471
Tru9I	TTAA	2 cut(s)	21, 471
TscAI	CASTG	1 cut(s)	482
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	479
TspRI	CASTG	1 cut(s)	482
XagI	CCTNNNNNAGG	1 cut(s)	235
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.