Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

12699230 .. 12702899

Gene Structure 3670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022819

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTGGCATTGTGAGGGTTGCCGTGCTGCCGGACCCAGAATCTGAGGCTCGATCTCGCTACCCTGTTTCGGGAGGGGTGACTGAATTTGGAGATAGCAGGAATCAGGAGAGCACTAGCGAGGTGGTGAATGCTAACTACTCAGCTGCATTGTTGGGATTAGCATATGGAGACACTGATCTTGTGGCCACAGGGTCAATGCTTGCAGCATTGGAAATCCAGGCAGCTCAAATGTGGTGCCATGTAAGAGAGGGAGATAACATTTATGCACCAGATTACACAAAGGAAAGTCGGGTAGTTGGAGTACTGCTGTGGGCTAATAAGAGAAACAGTAATCTTTGGTTTGCGCCTGCACAGCGGAGAGAGTGCCTGCTTGGAATCCAGCTGCTGCCTATTGTACCTATTACTGAGGAATTGTTCTCTGATGTTGGCTATGTTAGGGAACTTGTGAAGTGGACTGAACCGGCTCTTATTAGAGAGGGTGTTGGGGAAGGATGGAAAGGGTTTGTGTACTCTTTGGAAGGGATTTATGACAAGAATGGTGCTTTGAATGGTCACGATGATGGCAACTCGCTTACGAATCTGTTATGGTGGATCGACAGCAGAGGTGAGGAAAGAGATGGATGCCAAGTCAGAGAGAAGATTTGCTCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

219

Amino Acids

24.08

Weight (kDa)

4.7

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	24 - 185	3.4e-37	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	237
AciI	CCGC	1 cut(s)	358
AclWI	GGATC	1 cut(s)	602
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	3 cut(s)	306, 399, 512
AfiI	CCNNNNNNNGG	2 cut(s)	70, 71
AgsI	TTSAA	1 cut(s)	550
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	146, 227, 385
AluI	AGCT	3 cut(s)	146, 227, 385
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	602
AlwNI	CAGNNNCTG	2 cut(s)	44, 388
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	6 cut(s)	28, 146, 206, 224, 385, 388
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	3 cut(s)	91, 139, 620
AvaII	GGWCC	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	6 cut(s)	15, 133, 218, 236, 372, 375
BccI	CCATC	3 cut(s)	489, 557, 614
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	6 cut(s)	29, 147, 207, 225, 386, 389
BlsI	GCNGC	6 cut(s)	30, 148, 208, 226, 387, 390
BmcAI	AGTACT	1 cut(s)	306
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	36, 239
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	614
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 71
Bse118I	RCCGGY	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	500, 629
BseLI	CCNNNNNNNGG	2 cut(s)	70, 71
BseMII	CTCAG	3 cut(s)	36, 156, 399
BseXI	GCAGC	6 cut(s)	15, 133, 218, 236, 372, 375
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	32, 464
BslI	CCNNNNNNNGG	2 cut(s)	70, 71
BsmAI	GTCTC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	53, 178, 594
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	3 cut(s)	37, 155, 400
BspLI	GGNNCC	2 cut(s)	36, 239
BspPI	GGATC	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	463
BssMI	GATC	3 cut(s)	53, 178, 594
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	332
BstC8I	GCNNGC	4 cut(s)	7, 204, 351, 371
BstDEI	CTNAG	4 cut(s)	45, 142, 408, 649
BstF5I	GGATG	2 cut(s)	500, 629
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	3 cut(s)	56, 181, 597
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	3 cut(s)	53, 178, 594
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	6 cut(s)	15, 133, 218, 236, 372, 375
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	500, 629
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	4 cut(s)	7, 204, 351, 371
CaiI	CAGNNNCTG	2 cut(s)	44, 388
CfoI	GCGC	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	3 cut(s)	305, 398, 511
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	9 cut(s)	5, 50, 146, 188, 227, 317, 385, 432, 467
CviKI_1	RGCY	9 cut(s)	5, 50, 146, 188, 227, 317, 385, 432, 467
CviQI	GTAC	3 cut(s)	305, 398, 511
DdeI	CTNAG	4 cut(s)	45, 142, 408, 649
DpnI	GATC	3 cut(s)	55, 180, 596
DpnII	GATC	3 cut(s)	53, 178, 594
EaeI	YGGCCR	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	245
FaiI	YATR	7 cut(s)	166, 168, 243, 267, 435, 531, 589
FatI	CATG	1 cut(s)	241
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	6 cut(s)	29, 147, 207, 225, 386, 389
FokI	GGATG	2 cut(s)	507, 636
Fsp4HI	GCNGC	6 cut(s)	29, 147, 207, 225, 386, 389
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	6 cut(s)	29, 147, 207, 225, 386, 389
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	2 cut(s)	32, 464
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	4 cut(s)	41, 103, 378, 580
HpaII	CCGG	2 cut(s)	32, 464
HphI	GGTGA	3 cut(s)	91, 139, 620
Hpy166II	GTNNAC	2 cut(s)	456, 511
Hpy188I	TCNGA	3 cut(s)	46, 424, 635
Hpy188III	TCNNGA	3 cut(s)	72, 107, 557
Hpy8I	GTNNAC	2 cut(s)	456, 511
HpyAV	CCTTC	2 cut(s)	485, 515
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	4 cut(s)	149, 206, 269, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	4 cut(s)	45, 142, 408, 649
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	347
Kzo9I	GATC	3 cut(s)	53, 178, 594
Lsp1109I	GCAGC	6 cut(s)	15, 133, 218, 236, 372, 375
LweI	GCATC	1 cut(s)	614
MaeI	CTAG	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	79, 554
MalI	GATC	3 cut(s)	55, 180, 596
MboI	GATC	3 cut(s)	53, 178, 594
MboII	GAAGA	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	2 cut(s)	86, 413
MluNI	TGGCCA	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	9 cut(s)	9, 40, 68, 115, 244, 403, 472, 599, 604
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	561
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	3 cut(s)	146, 358, 385
MspI	CCGG	2 cut(s)	32, 464
MspR9I	CCNGG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	355
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	3 cut(s)	53, 178, 594
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	2 cut(s)	36, 239
NmuCI	GTSAC	2 cut(s)	79, 554
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	4 cut(s)	41, 103, 378, 580
PkrI	GCNGC	6 cut(s)	30, 148, 208, 226, 387, 390
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	36, 239
PspPI	GGNCC	1 cut(s)	34
PstNI	CAGNNNCTG	2 cut(s)	44, 388
PvuII	CAGCTG	2 cut(s)	146, 385
RsaI	GTAC	3 cut(s)	306, 399, 512
RsaNI	GTAC	3 cut(s)	305, 398, 511
RseI	CAYNNNNRTG	1 cut(s)	561
SatI	GCNGC	6 cut(s)	29, 147, 207, 225, 386, 389
Sau3AI	GATC	3 cut(s)	53, 178, 594
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	306
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	6 cut(s)	126, 148, 229, 387, 403, 610
SfaNI	GCATC	1 cut(s)	614
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	561
Sse9I	AATT	2 cut(s)	86, 413
SsiI	CCGC	1 cut(s)	358
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	2 cut(s)	52, 597
TasI	AATT	2 cut(s)	86, 413
TatI	WGTACW	2 cut(s)	304, 510
TfiI	GAWTC	4 cut(s)	41, 103, 378, 580
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	79, 554
TseI	GCWGC	6 cut(s)	28, 146, 206, 224, 385, 388
Tsp45I	GTSAC	2 cut(s)	79, 554
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	86
XspI	CTAG	1 cut(s)	117
ZrmI	AGTACT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.