Rorug02G0528200

Endo-1,3(4)-beta-glucanase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
65793243 .. 65794812
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0528200.1

Sequence Viewer

Length: 1077 bp
ATGAGTTACTTTATTGATAGTGGAGGTGACCACGAAGAAAACACTGGGTATGACGACAAAAATATTGGGTATGACGATAGTGAGACACAAGATATCGGCGAAAAATTGTTGTGGAACCGCTTTGGGCTTCCTAAGGGTCCGCGGAAAAAGGTAGCAAGATTTTCCAGATATTTGGGCATTTTAGCAAAAGATTGTTCATTATTTCCAATTAGCGAACCTGATTTTCGCAAGTTCAACAAAAGTGACAACTATGAAAGGGCTTGGAATCGCGTAAAGGAAACTCTTGACTTGACACACCCACGAGTTGCTTGTTTGGAAAGTAAAATCAGGGAAAAGGTCAGGAGTAAGTTGAATGAACGCTGGAAGCATTGGAAGTCTGAGTTGAGCCAGAAATGGTATAAACCATTCAAGAATAGTCCCCTTAGGTTTCGCAAACCTGATGATGATCGTGTTGATGAGGACCAATGGAAAGTGTTTGTTGCAAACAACGACAAGAAGAAGCATCAGAGGATGGTGACCATCAACAAGAGGAACCGGTCTCAAAAGAGAATGAATCAGTCAACAGGGACACGAACCTATGCTAGTGTGGCTCATGAATATGAACTTCTACATGGTAAAGAGCCAGATAGATGGGAGTTGTTCAAATTAACACACCGAAAGGCAGGAACTCAAGAGCCAATTGATGCAGCAAGTGCAAAAGCAATTGCGGATTTTGAAGAAGCCGAACAAAAGAGGCTAAGCATGAATGTTGACATCACTGCTCCAGAAATCCGTGAAGAGATGTATGCTGAGGTTCTTGGTAAGGAGAAGGGAAACCGAGTAAGGGGTCTTGGAGCTGGGGTCACTTGGGATGAAGTTCCTGGAATTCATGTGGAAGAGCGAGGTGTTTCAAAGGAAGTGCAACTCTTGCGAGAGCGATTAGAAGCACAAACCAAAGAGGCACAAGAGAGGGAAGCACGTCTGATGGATGAATTACAAAGGAAAATGGCCGAACAAACAAAAAAAATGGAAGAAATGTTTGAAGTAAGGTGTGTAGGCATGGCGGTCCAAAAAATGGGAGAGTTGTTTAAAGTGTAA

Protein Analysis

358

Amino Acids

42.05

Weight (kDa)

9.02

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 152 - 282 9.3e-19 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18310 AT5G15870
fragaria_vesca FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1054
AccII CGCG 2 cut(s) 142, 270
AciI CCGC 5 cut(s) 118, 140, 142, 707, 1043
AcoI YGGCCR 1 cut(s) 987
AcsI RAATTY 1 cut(s) 864
AfiI CCNNNNNNNGG 2 cut(s) 823, 1054
AgeI ACCGGT 1 cut(s) 534
AgsI TTSAA 7 cut(s) 235, 352, 409, 643, 716, 891, 1022
AjiI CACGTC 1 cut(s) 959
AjnI CCWGG 1 cut(s) 859
AluBI AGCT 1 cut(s) 836
AluI AGCT 1 cut(s) 836
Alw26I GTCTC 2 cut(s) 77, 543
AoxI GGCC 1 cut(s) 987
ApeKI GCWGC 1 cut(s) 686
ApoI RAATTY 1 cut(s) 864
AsiGI ACCGGT 1 cut(s) 534
AspS9I GGNCC 3 cut(s) 137, 460, 1045
AsuHPI GGTGA 2 cut(s) 38, 526
AvaII GGWCC 3 cut(s) 137, 460, 1045
AxyI CCTNAGG 2 cut(s) 132, 422
BauI CACGAG 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 789
BbvI GCAGC 1 cut(s) 698
BccI CCATC 4 cut(s) 505, 527, 624, 958
BciT130I CCWGG 1 cut(s) 861
BcoDI GTCTC 2 cut(s) 77, 543
BfaI CTAG 1 cut(s) 582
BisI GCNGC 1 cut(s) 687
BlpI GCTNAGC 1 cut(s) 737
BlsI GCNGC 1 cut(s) 688
Bme1390I CCNGG 1 cut(s) 861
Bme18I GGWCC 3 cut(s) 137, 460, 1045
BmgBI CACGTC 1 cut(s) 959
BmgT120I GGNCC 3 cut(s) 137, 460, 1045
BmiI GGNNCC 3 cut(s) 116, 138, 533
BmrFI CCNGG 1 cut(s) 861
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 2 cut(s) 511, 673
BmuI ACTGGG 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 747
Bpu10I CCTNAGC 1 cut(s) 789
Bpu1102I GCTNAGC 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 654
BsaBI GATNNNNATC 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 543
BsaJI CCNNGG 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 534
BsaXI ACNNNNNCTCC 2 cut(s) 825, 855
Bsc4I CCNNNNNNNGG 2 cut(s) 823, 1054
Bse118I RCCGGY 1 cut(s) 534
Bse1I ACTGG 1 cut(s) 49
Bse21I CCTNAGG 2 cut(s) 132, 422
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 1 cut(s) 861
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 3 cut(s) 516, 856, 973
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 823, 1054
BseMII CTCAG 2 cut(s) 369, 780
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 698
BseYI CCCAGC 1 cut(s) 836
Bsh1236I CGCG 2 cut(s) 142, 270
BshFI GGCC 1 cut(s) 989
BshTI ACCGGT 1 cut(s) 534
BsiSI CCGG 1 cut(s) 535
BslFI GGGAC 2 cut(s) 402, 580
BslI CCNNNNNNNGG 2 cut(s) 823, 1054
BsmAI GTCTC 2 cut(s) 77, 543
BsmFI GGGAC 2 cut(s) 402, 580
BsnI GGCC 1 cut(s) 989
Bso31I GGTCTC 1 cut(s) 543
Bsp143I GATC 1 cut(s) 445
Bsp1720I GCTNAGC 1 cut(s) 737
BspACI CCGC 5 cut(s) 118, 140, 142, 707, 1043
BspANI GGCC 1 cut(s) 989
BspCNI CTCAG 2 cut(s) 370, 781
BspFNI CGCG 2 cut(s) 142, 270
BspHI TCATGA 1 cut(s) 592
BspLI GGNNCC 3 cut(s) 116, 138, 533
BspQI GCTCTTC 1 cut(s) 870
BspTNI GGTCTC 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 534
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 534
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 445
BssSI CACGAG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 861
Bst6I CTCTTC 2 cut(s) 771, 870
BstAPI GCANNNNNTGC 2 cut(s) 692, 907
BstDEI CTNAG 5 cut(s) 132, 378, 422, 737, 789
BstDSI CCRYGG 1 cut(s) 140
BstEII GGTNACC 2 cut(s) 26, 514
BstF5I GGATG 3 cut(s) 516, 856, 973
BstFNI CGCG 2 cut(s) 142, 270
BstKTI GATC 1 cut(s) 448
BstMAI GTCTC 2 cut(s) 77, 543
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 3 cut(s) 587, 692, 907
BstNI CCWGG 1 cut(s) 861
BstPI GGTNACC 2 cut(s) 26, 514
BstSCI CCNGG 1 cut(s) 859
BstUI CGCG 2 cut(s) 142, 270
BstV1I GCAGC 1 cut(s) 698
BstXI CCANNNNNNTGG 2 cut(s) 172, 630
Bsu36I CCTNAGG 2 cut(s) 132, 422
BsuRI GGCC 1 cut(s) 989
BtgI CCRYGG 1 cut(s) 140
BtrI CACGTC 1 cut(s) 959
BtsCI GGATG 3 cut(s) 516, 856, 973
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 2 cut(s) 42, 756
CciI TCATGA 1 cut(s) 592
Cfr10I RCCGGY 1 cut(s) 534
Cfr13I GGNCC 3 cut(s) 137, 460, 1045
Cfr42I CCGCGG 1 cut(s) 143
CspAI ACCGGT 1 cut(s) 534
CviAII CATG 5 cut(s) 593, 611, 742, 869, 1039
DdeI CTNAG 5 cut(s) 132, 378, 422, 737, 789
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
DraI TTTAAA 1 cut(s) 1069
EaeI YGGCCR 1 cut(s) 987
Eam1104I CTCTTC 2 cut(s) 771, 870
EarI CTCTTC 2 cut(s) 771, 870
Eco31I GGTCTC 1 cut(s) 543
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 3 cut(s) 137, 460, 1045
Eco81I CCTNAGG 2 cut(s) 132, 422
Eco91I GGTNACC 2 cut(s) 26, 514
EcoO65I GGTNACC 2 cut(s) 26, 514
EcoRI GAATTC 1 cut(s) 864
EcoRII CCWGG 1 cut(s) 859
EcoRV GATATC 1 cut(s) 94
FaeI CATG 5 cut(s) 596, 614, 745, 872, 1042
FaqI GGGAC 2 cut(s) 402, 580
FatI CATG 5 cut(s) 592, 610, 741, 868, 1038
Fnu4HI GCNGC 1 cut(s) 687
FokI GGATG 3 cut(s) 523, 863, 980
Fsp4HI GCNGC 1 cut(s) 687
FspBI CTAG 1 cut(s) 582
GluI GCNGC 1 cut(s) 687
GsaI CCCAGC 1 cut(s) 840
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 1 cut(s) 989
HapII CCGG 1 cut(s) 535
Hin1II CATG 5 cut(s) 596, 614, 745, 872, 1042
HincII GTYRAC 2 cut(s) 561, 751
HindII GTYRAC 2 cut(s) 561, 751
HinfI GANTC 2 cut(s) 265, 553
HpaII CCGG 1 cut(s) 535
HphI GGTGA 2 cut(s) 38, 526
Hpy166II GTNNAC 2 cut(s) 561, 751
Hpy188I TCNGA 3 cut(s) 379, 507, 963
Hpy188III TCNNGA 7 cut(s) 165, 284, 340, 409, 593, 671, 764
Hpy8I GTNNAC 2 cut(s) 561, 751
HpyAV CCTTC 1 cut(s) 802
HpyCH4IV ACGT 1 cut(s) 958
HpyCH4V TGCA 4 cut(s) 482, 686, 695, 901
HpyF10VI GCNNNNNNNGC 3 cut(s) 587, 692, 907
HpyF3I CTNAG 5 cut(s) 132, 378, 422, 737, 789
HpySE526I ACGT 1 cut(s) 958
Hsp92II CATG 5 cut(s) 596, 614, 745, 872, 1042
KspI CCGCGG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 445
LguI GCTCTTC 1 cut(s) 870
LmnI GCTCC 2 cut(s) 766, 833
Lsp1109I GCAGC 1 cut(s) 698
LweI GCATC 2 cut(s) 511, 673
MaeI CTAG 1 cut(s) 582
MaeII ACGT 1 cut(s) 958
MaeIII GTNAC 5 cut(s) 5, 26, 242, 514, 841
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 6 cut(s) 47, 508, 728, 788, 887, 1022
MfeI CAATTG 2 cut(s) 678, 702
MluCI AATT 7 cut(s) 104, 207, 644, 678, 702, 864, 971
MnlI CCTC 9 cut(s) 17, 451, 501, 522, 726, 784, 875, 931, 942
MseI TTAA 2 cut(s) 647, 1068
MslI CAYNNNNRTG 1 cut(s) 597
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 535
MspR9I CCNGG 1 cut(s) 861
MunI CAATTG 2 cut(s) 678, 702
MvaI CCWGG 1 cut(s) 861
MvnI CGCG 2 cut(s) 142, 270
MwoI GCNNNNNNNGC 3 cut(s) 587, 692, 907
NdeII GATC 1 cut(s) 445
NlaIII CATG 5 cut(s) 596, 614, 745, 872, 1042
NlaIV GGNNCC 3 cut(s) 116, 138, 533
NmuCI GTSAC 4 cut(s) 26, 242, 514, 841
PagI TCATGA 1 cut(s) 592
PciSI GCTCTTC 1 cut(s) 870
PfeI GAWTC 2 cut(s) 265, 553
PflMI CCANNNNNTGG 1 cut(s) 1054
PfoI TCCNGGA 1 cut(s) 859
PinAI ACCGGT 1 cut(s) 534
PkrI GCNGC 1 cut(s) 688
Psp6I CCWGG 1 cut(s) 859
PspEI GGTNACC 2 cut(s) 26, 514
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 1 cut(s) 859
PspN4I GGNNCC 3 cut(s) 116, 138, 533
PspPI GGNCC 3 cut(s) 137, 460, 1045
RseI CAYNNNNRTG 1 cut(s) 597
SacII CCGCGG 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 870
SaqAI TTAA 2 cut(s) 647, 1068
SatI GCNGC 1 cut(s) 687
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 3 cut(s) 137, 460, 1045
ScrFI CCNGG 1 cut(s) 861
SfaNI GCATC 2 cut(s) 511, 673
Sfr303I CCGCGG 1 cut(s) 143
SgrBI CCGCGG 1 cut(s) 143
SinI GGWCC 3 cut(s) 137, 460, 1045
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 669
SmoI CTYRAG 1 cut(s) 669
Sse9I AATT 7 cut(s) 104, 207, 644, 678, 702, 864, 971
SsiI CCGC 5 cut(s) 118, 140, 142, 707, 1043
SspI AATATT 1 cut(s) 64
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 859
TaiI ACGT 1 cut(s) 961
TasI AATT 7 cut(s) 104, 207, 644, 678, 702, 864, 971
TfiI GAWTC 2 cut(s) 265, 553
Tru1I TTAA 2 cut(s) 647, 1068
Tru9I TTAA 2 cut(s) 647, 1068
TscAI CASTG 2 cut(s) 49, 763
TseFI GTSAC 4 cut(s) 26, 242, 514, 841
TseI GCWGC 1 cut(s) 686
Tsp45I GTSAC 4 cut(s) 26, 242, 514, 841
TspGWI ACGGA 1 cut(s) 761
TspRI CASTG 2 cut(s) 49, 763
Van91I CCANNNNNTGG 1 cut(s) 1054
VpaK11BI GGWCC 3 cut(s) 137, 460, 1045
XapI RAATTY 1 cut(s) 864
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.