Rroxscaffold_2G00132530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000403
Physical Location & Seq
Reverse (-)
69519076 .. 69530893
11818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00132530.1

Sequence Viewer

Length: 621 bp
ATGAGTACTTGTTTCTTTGAATGGAAGGAGATTCGGATTTGGGTTCGGCAAAGTCAAGGACCTGGTCGGCTCCGGTCAACTCAAGTTCATAAATGGGGCATGTGTATGCACGACGAGGCCACTTCTTTCTCCAGATCGCTTGATTTGGTAAACTTCGAAAACTCTTTTGTTTGTAAAATTACAGTTCAACTTCTAAAGAGAAGAGAGATGCGAGAACTCTTAGGGAAGCTTGAAATATTTAGAATCGTTTGCAAGAATGAGAATAATATTTGGGTGCCACCCAAGCTCACAAAGAAAGCAAGGATAAATGAGAGATACATCTTCCCATACTCCTCAAAGTTTCGAATACCGCACATCGGAGGTCTTATTGGTTTCGAGCGGATCGAGGGAGTGGACGACTTTGGCGACGGGGTGAGGATCGGAGGAAGGGTGCGAGTTCTAAGACTTGGCCTTTGCTCGGGCGCCTCATTAGCCACACCGGCTTATCGCTTTCGCGGTATCCAAGCTTTTGCCACCGTAATGGTCCTCCTCTGTCTTCACCTTCTTCACCACGTGGTCATCCTCGACTTGATTCTCTTCGACGACGACTTCTCCTCCATATCCGAGCTTGCCGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.72

Weight (kDa)

9.27

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18310 AT5G15870
fragaria_vesca FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 274, 461
AccBSI CCGCTC 1 cut(s) 379
AccII CGCG 1 cut(s) 495
AciI CCGC 3 cut(s) 350, 379, 495
AclWI GGATC 2 cut(s) 389, 425
AcvI CACGTG 1 cut(s) 553
AcyI GRCGYC 1 cut(s) 462
AdeI CACNNNGTG 1 cut(s) 553
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 356, 457
AgsI TTSAA 3 cut(s) 20, 188, 233
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 5 cut(s) 229, 286, 506, 607, 617
AluI AGCT 5 cut(s) 229, 286, 506, 607, 617
AlwI GGATC 2 cut(s) 389, 425
Ama87I CYCGRG 1 cut(s) 457
AoxI GGCC 2 cut(s) 117, 448
ArsI GACNNNNNNTTYG 2 cut(s) 435, 467
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 2 cut(s) 59, 523
AsuHPI GGTGA 3 cut(s) 424, 530, 539
AsuII TTCGAA 2 cut(s) 156, 343
AvaI CYCGRG 1 cut(s) 457
AvaII GGWCC 2 cut(s) 59, 523
BanI GGYRCC 2 cut(s) 274, 461
BbrPI CACGTG 1 cut(s) 553
BbsI GAAGAC 1 cut(s) 527
BciT130I CCWGG 1 cut(s) 63
BciVI GTATCC 1 cut(s) 509
BfoI RGCGCY 1 cut(s) 465
BfuI GTATCC 1 cut(s) 509
BglI GCCNNNNNGGC 1 cut(s) 479
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 2 cut(s) 59, 523
BmeT110I CYCGRG 1 cut(s) 457
BmgT120I GGNCC 2 cut(s) 59, 523
BmiI GGNNCC 3 cut(s) 71, 276, 463
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 527
BpmI CTGGAG 1 cut(s) 115
Bpu14I TTCGAA 2 cut(s) 156, 343
BpuEI CTTGAG 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 553
BsaHI GRCGYC 1 cut(s) 462
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 6 cut(s) 414, 444, 575, 578, 605, 608
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 457
Bse118I RCCGGY 1 cut(s) 478
BseBI CCWGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 558
BseLI CCNNNNNNNGG 2 cut(s) 356, 457
BseRI GAGGAG 3 cut(s) 322, 518, 583
Bsh1236I CGCG 1 cut(s) 495
BshFI GGCC 2 cut(s) 119, 450
BshNI GGYRCC 2 cut(s) 274, 461
BsiHKCI CYCGRG 1 cut(s) 457
BsiSI CCGG 2 cut(s) 73, 479
BslI CCNNNNNNNGG 2 cut(s) 356, 457
BsnI GGCC 2 cut(s) 119, 450
BsoBI CYCGRG 1 cut(s) 457
Bsp119I TTCGAA 2 cut(s) 156, 343
Bsp143I GATC 3 cut(s) 134, 381, 417
BspACI CCGC 3 cut(s) 350, 379, 495
BspANI GGCC 2 cut(s) 119, 450
BspFNI CGCG 1 cut(s) 495
BspLI GGNNCC 3 cut(s) 71, 276, 463
BspPI GGATC 2 cut(s) 389, 425
BspT104I TTCGAA 2 cut(s) 156, 343
BspT107I GGYRCC 2 cut(s) 274, 461
BsrBI CCGCTC 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 478
BssAI RCCGGY 1 cut(s) 478
BssMI GATC 3 cut(s) 134, 381, 417
BssNI GRCGYC 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 184, 517
Bst6I CTCTTC 2 cut(s) 196, 581
BstACI GRCGYC 1 cut(s) 462
BstBAI YACGTR 1 cut(s) 553
BstBI TTCGAA 2 cut(s) 156, 343
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 2 cut(s) 220, 440
BstF5I GGATG 1 cut(s) 558
BstFNI CGCG 1 cut(s) 495
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 3 cut(s) 137, 384, 420
BstMBI GATC 3 cut(s) 134, 381, 417
BstMWI GCNNNNNNNGC 3 cut(s) 283, 470, 479
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 61
BstUI CGCG 1 cut(s) 495
BstV2I GAAGAC 1 cut(s) 527
BstXI CCANNNNNNTGG 1 cut(s) 520
BsuI GTATCC 1 cut(s) 509
BsuRI GGCC 2 cut(s) 119, 450
BtsCI GGATG 1 cut(s) 558
Cac8I GCNNGC 1 cut(s) 609
CfoI GCGC 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 478
Cfr13I GGNCC 2 cut(s) 59, 523
CsiI ACCWGGT 1 cut(s) 61
Csp6I GTAC 1 cut(s) 6
CviAII CATG 1 cut(s) 100
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 2 cut(s) 220, 440
DinI GGCGCC 1 cut(s) 463
DpnI GATC 3 cut(s) 136, 383, 419
DpnII GATC 3 cut(s) 134, 381, 417
DraIII CACNNNGTG 1 cut(s) 553
Eam1104I CTCTTC 2 cut(s) 196, 581
EarI CTCTTC 2 cut(s) 196, 581
Eco47I GGWCC 2 cut(s) 59, 523
Eco72I CACGTG 1 cut(s) 553
Eco88I CYCGRG 1 cut(s) 457
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 61
EgeI GGCGCC 1 cut(s) 463
EheI GGCGCC 1 cut(s) 463
FaeI CATG 1 cut(s) 103
FaiI YATR 5 cut(s) 90, 101, 107, 328, 599
FatI CATG 1 cut(s) 99
FokI GGATG 1 cut(s) 545
GlaI GCGC 1 cut(s) 463
GsuI CTGGAG 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 465
HaeIII GGCC 2 cut(s) 119, 450
HapII CCGG 2 cut(s) 73, 479
HhaI GCGC 1 cut(s) 464
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HindIII AAGCTT 3 cut(s) 227, 504, 615
HinfI GANTC 3 cut(s) 31, 243, 571
HpaII CCGG 2 cut(s) 73, 479
HphI GGTGA 3 cut(s) 424, 530, 539
Hpy166II GTNNAC 3 cut(s) 78, 151, 394
Hpy188I TCNGA 4 cut(s) 36, 359, 422, 604
Hpy188III TCNNGA 1 cut(s) 132
Hpy8I GTNNAC 3 cut(s) 78, 151, 394
Hpy99I CGWCG 4 cut(s) 116, 410, 584, 587
HpyAV CCTTC 3 cut(s) 19, 420, 551
HpyCH4III ACNGT 2 cut(s) 184, 517
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 2 cut(s) 109, 252
HpyF10VI GCNNNNNNNGC 3 cut(s) 283, 470, 479
HpyF3I CTNAG 2 cut(s) 220, 440
HpySE526I ACGT 1 cut(s) 552
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 1 cut(s) 462
KasI GGCGCC 1 cut(s) 461
Kzo9I GATC 3 cut(s) 134, 381, 417
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 5 cut(s) 48, 75, 86, 145, 492
LweI GCATC 1 cut(s) 198
MabI ACCWGGT 1 cut(s) 61
MaeII ACGT 1 cut(s) 552
MalI GATC 3 cut(s) 136, 383, 419
MbiI CCGCTC 1 cut(s) 379
MboI GATC 3 cut(s) 134, 381, 417
MboII GAAGA 5 cut(s) 213, 313, 527, 536, 568
MluCI AATT 1 cut(s) 177
Mly113I GGCGCC 1 cut(s) 462
MslI CAYNNNNRTG 2 cut(s) 104, 518
MspI CCGG 2 cut(s) 73, 479
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 1 cut(s) 495
MwoI GCNNNNNNNGC 3 cut(s) 283, 470, 479
NarI GGCGCC 1 cut(s) 462
NdeII GATC 3 cut(s) 134, 381, 417
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 3 cut(s) 71, 276, 463
NspI RCATGY 1 cut(s) 103
NspV TTCGAA 2 cut(s) 156, 343
PcsI WCGNNNNNNNCGW 2 cut(s) 381, 402
PfeI GAWTC 3 cut(s) 31, 243, 571
PflFI GACNNNGTC 1 cut(s) 63
PluTI GGCGCC 1 cut(s) 465
PmaCI CACGTG 1 cut(s) 553
PmlI CACGTG 1 cut(s) 553
Ppu21I YACGTR 1 cut(s) 553
PpuMI RGGWCCY 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 61
PspCI CACGTG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 3 cut(s) 71, 276, 463
PspPI GGNCC 2 cut(s) 59, 523
PspPPI RGGWCCY 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 63
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 2 cut(s) 104, 518
Sau3AI GATC 3 cut(s) 134, 381, 417
Sau96I GGNCC 2 cut(s) 59, 523
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 63
SetI ASST 9 cut(s) 64, 231, 288, 364, 508, 543, 555, 609, 619
SexAI ACCWGGT 1 cut(s) 61
SfaNI GCATC 1 cut(s) 198
SfoI GGCGCC 1 cut(s) 463
SfuI TTCGAA 2 cut(s) 156, 343
SinI GGWCC 2 cut(s) 59, 523
SmiMI CAYNNNNRTG 2 cut(s) 104, 518
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 1 cut(s) 177
SsiI CCGC 3 cut(s) 350, 379, 495
SspDI GGCGCC 1 cut(s) 461
SspI AATATT 2 cut(s) 237, 268
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 2 cut(s) 184, 517
TaiI ACGT 1 cut(s) 555
TaqI TCGA 6 cut(s) 156, 343, 375, 384, 564, 579
TasI AATT 1 cut(s) 177
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 3 cut(s) 31, 243, 571
TspDTI ATGAA 1 cut(s) 77
Tth111I GACNNNGTC 1 cut(s) 63
VpaK11BI GGWCC 2 cut(s) 59, 523
XceI RCATGY 1 cut(s) 103
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.