Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8334235.1

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 370

Gene Structure 370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8334235.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 370 bp

tcacaccaagcacaccatccagctcagtaacgatcagacatggctggtctacacctcttcgccgatccatttgactgaccaaaacttgtctgtgatcacttcttctgggttttccggcattgtgagggttgccgtgctgccggacccagaatccgaggctcgatctcgctacccggtttcgggtgaggctgtgtccagagatgggtttaatttggagtataagtgggaagcaaaagggtctggggatttgcttatgctgcctcatcctctacatgtgaagcttccaatgaaaatagaacaagcagaaatcaacgtatcaagcaaccacacagataagaaccaaaaaacccagaagatgtttgcgcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

122

Amino Acids

13.66

Weight (kDa)

6.64

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	49
AclWI	GGATC	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	179, 180, 202
AflIII	ACRYGT	1 cut(s)	272
AluBI	AGCT	2 cut(s)	23, 281
AluI	AGCT	2 cut(s)	23, 281
AlwI	GGATC	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	137, 257
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	124, 244
BccI	CCATC	2 cut(s)	24, 195
BceAI	ACGGC	1 cut(s)	117
BclI	TGATCA	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	174
BisI	GCNGC	2 cut(s)	138, 258
BlsI	GCNGC	2 cut(s)	139, 259
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 180, 202
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	16, 263
BseLI	CCNNNNNNNGG	3 cut(s)	179, 180, 202
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	124, 244
BsiSI	CCGG	3 cut(s)	115, 141, 174
BslI	CCNNNNNNNGG	3 cut(s)	179, 180, 202
Bsp143I	GATC	4 cut(s)	32, 64, 94, 162
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	4 cut(s)	32, 64, 94, 162
Bst6I	CTCTTC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	16, 263
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	4 cut(s)	35, 67, 97, 165
BstMBI	GATC	4 cut(s)	32, 64, 94, 162
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	124, 244
BtsCI	GGATG	2 cut(s)	16, 263
CfoI	GCGC	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	143
CviAII	CATG	2 cut(s)	40, 273
CviJI	RGCY	5 cut(s)	23, 44, 159, 189, 281
CviKI_1	RGCY	5 cut(s)	23, 44, 159, 189, 281
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	4 cut(s)	34, 66, 96, 164
DpnII	GATC	4 cut(s)	32, 64, 94, 162
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	143
FaeI	CATG	2 cut(s)	43, 276
FaiI	YATR	4 cut(s)	41, 220, 255, 274
FatI	CATG	2 cut(s)	39, 272
FbaI	TGATCA	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	138, 258
FokI	GGATG	2 cut(s)	3, 250
Fsp4HI	GCNGC	2 cut(s)	138, 258
FspI	TGCGCA	1 cut(s)	364
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	2 cut(s)	138, 258
HapII	CCGG	3 cut(s)	115, 141, 174
HhaI	GCGC	1 cut(s)	365
Hin1II	CATG	2 cut(s)	43, 276
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	1 cut(s)	150
HpaII	CCGG	3 cut(s)	115, 141, 174
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	37, 155
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	2 cut(s)	43, 276
HspAI	GCGC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	32, 64, 94, 162
Lsp1109I	GCAGC	2 cut(s)	124, 244
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	4 cut(s)	34, 66, 96, 164
MboI	GATC	4 cut(s)	32, 64, 94, 162
MboII	GAAGA	3 cut(s)	49, 94, 365
MluCI	AATT	1 cut(s)	209
MnlI	CCTC	6 cut(s)	65, 118, 149, 179, 271, 277
MseI	TTAA	1 cut(s)	208
MspI	CCGG	3 cut(s)	115, 141, 174
MspR9I	CCNGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	4 cut(s)	32, 64, 94, 162
NlaIII	CATG	2 cut(s)	43, 276
NlaIV	GGNNCC	1 cut(s)	145
NsbI	TGCGCA	1 cut(s)	364
NspI	RCATGY	1 cut(s)	276
PciI	ACATGT	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	139, 259
PscI	ACATGT	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	208
SatI	GCNGC	2 cut(s)	138, 258
Sau3AI	GATC	4 cut(s)	32, 64, 94, 162
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	4 cut(s)	25, 57, 283, 316
SinI	GGWCC	1 cut(s)	143
Sse9I	AATT	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	172
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	161
TasI	AATT	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	208
Tru9I	TTAA	1 cut(s)	208
TseI	GCWGC	2 cut(s)	137, 257
TspDTI	ATGAA	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	143
XceI	RCATGY	1 cut(s)	276
XmiI	GTMKAC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.