Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023760.1

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

2358 .. 3588

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023760.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgtctgatttgcgtatgaagtctctgggcttattagccaatttaagttgcttatatacaggaaatgatgattctcagtcatgtatagagctgaaaggattctggacttctcaaggacaagatgatcctcacctcctcagataccgaggttggagtagcttagtcaggcagctgagcatcttatctaattatgtatatattgtagatgagaatcgcaccaggctacttgtactgctcatattgaagcttgatgcattcagaatggcatcagactatcagagtttgaaaatcttttggttaatcacatgggccgatgatggagctgagtcaagagcatctcttccaagcgtctggactttattagagttattgggaagtctacttcacaagtttcctgaaccagctctgagtagagagggtcttggggaaggatggaaagggtttgtgtactctttgcaagaggtttatgacaagaatggtgctttggagaagattcggagcttgaatggtcacgatgatggcaactcgatttacgaatctgttgtggtgttccacagcagaggtgaggaaaaagatgaatgccgagtcggagagaagatttgctcagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

203

Amino Acids

23.03

Weight (kDa)

5.27

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	379
AclWI	GGATC	1 cut(s)	119
AfaI	GTAC	2 cut(s)	231, 449
AgsI	TTSAA	3 cut(s)	244, 286, 505
AjnI	CCWGG	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	7 cut(s)	91, 159, 172, 247, 323, 404, 501
AluI	AGCT	7 cut(s)	91, 159, 172, 247, 323, 404, 501
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	122, 575
BaeI	ACNNNNGTAYC	2 cut(s)	133, 166
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	3 cut(s)	311, 426, 512
BciT130I	CCWGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	27
BisI	GCNGC	1 cut(s)	170
BlpI	GCTNAGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	4 cut(s)	186, 241, 275, 344
Bpu1102I	GCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	437
BseJI	GATNNNNATC	1 cut(s)	210
BseMII	CTCAG	5 cut(s)	89, 151, 164, 315, 398
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	181
BshFI	GGCC	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	27
BsmI	GAATGC	2 cut(s)	254, 584
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	124
Bsp1720I	GCTNAGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	5 cut(s)	88, 150, 165, 316, 399
BspPI	GGATC	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	345
BstDEI	CTNAG	7 cut(s)	75, 137, 160, 173, 324, 407, 604
BstF5I	GGATG	1 cut(s)	437
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	309
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	2 cut(s)	230, 448
CviAII	CATG	2 cut(s)	81, 306
CviQI	GTAC	2 cut(s)	230, 448
DdeI	CTNAG	7 cut(s)	75, 137, 160, 173, 324, 407, 604
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	256
FaeI	CATG	2 cut(s)	84, 309
FatI	CATG	2 cut(s)	80, 305
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	311
HgaI	GACGC	1 cut(s)	337
Hin1II	CATG	2 cut(s)	84, 309
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	7 cut(s)	71, 99, 211, 326, 493, 536, 585
HphI	GGTGA	2 cut(s)	122, 575
Hpy166II	GTNNAC	2 cut(s)	380, 448
Hpy188I	TCNGA	8 cut(s)	7, 140, 260, 271, 279, 408, 498, 590
Hpy188III	TCNNGA	5 cut(s)	103, 330, 352, 395, 512
Hpy8I	GTNNAC	2 cut(s)	380, 448
HpyAV	CCTTC	1 cut(s)	422
HpyCH4V	TGCA	2 cut(s)	254, 457
HpyF3I	CTNAG	7 cut(s)	75, 137, 160, 173, 324, 407, 604
Hsp92II	CATG	2 cut(s)	84, 309
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	320, 498
LpnPI	CCDG	9 cut(s)	11, 45, 88, 151, 205, 232, 337, 408, 414
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	4 cut(s)	186, 241, 275, 344
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	332, 502, 607
MluCI	AATT	2 cut(s)	40, 187
MlyI	GAGTC	2 cut(s)	335, 594
MmeI	TCCRAC	2 cut(s)	131, 568
MnlI	CCTC	8 cut(s)	138, 140, 143, 146, 409, 454, 554, 559
Mph1103I	ATGCAT	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	2 cut(s)	44, 299
MslI	CAYNNNNRTG	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	220
Mva1269I	GAATGC	2 cut(s)	254, 584
MvaI	CCWGG	1 cut(s)	220
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	84, 309
NmeAIII	GCCGAG	1 cut(s)	608
NmuCI	GTSAC	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	256
PctI	GAATGC	2 cut(s)	254, 584
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	5 cut(s)	71, 99, 211, 493, 536
PkrI	GCNGC	1 cut(s)	171
PleI	GAGTC	2 cut(s)	334, 593
PpsI	GAGTC	2 cut(s)	334, 593
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	2 cut(s)	231, 449
RsaNI	GTAC	2 cut(s)	230, 448
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	2 cut(s)	44, 299
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	309
SchI	GAGTC	2 cut(s)	335, 594
ScrFI	CCNGG	1 cut(s)	220
SfaNI	GCATC	4 cut(s)	186, 241, 275, 344
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	40, 187
StyD4I	CCNGG	1 cut(s)	218
TaqI	TCGA	1 cut(s)	527
TasI	AATT	2 cut(s)	40, 187
TatI	WGTACW	2 cut(s)	229, 447
TfiI	GAWTC	5 cut(s)	71, 99, 211, 493, 536
Tru1I	TTAA	2 cut(s)	44, 299
Tru9I	TTAA	2 cut(s)	44, 299
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	2 cut(s)	32, 591
XmiI	GTMKAC	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.