Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Reverse (-)

10813767 .. 10818917

Gene Structure 5151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAAGGAGATTACGGATTTGGGTTCGGCAAAGTCAAGGACCTGGTCAGCTCCGAGTCAACTCAAGTTCATAAATGGGGCATGTGTATGCACGACGAGGCCACTTCTTTCTCCGGTCGCTTGATTTGCCCATATCTCACATTCTCTGTTTCGAACCAGACCTCAATAATATCACTCTCAACCATCCACACCATTCTATCTTTCTCTTCGAATCAAGATCACACCAAGCACACCATCAAGCTAAATAACGATCAGACATGGCTGGTCTACACCTCTTCGCCGATCCATTTGACTAACCACAACTTGTCTGTGATTACCTCTTCTGGGTTATCCGGCATTGTGAGAGTTGCAGTGCTGCCGGACCCAGAATCCGAGGCTGCCCTTGATCAGTTCAGCTCTTGCTACCCATTTTCAGGTGAGGCTGTGTTCGGAGATGGGTTTAATTTGGAGTATAAGTGGGAAGCAAAAGGGTCTGGGGATTTGCTTATGCTGGCTCATCCTCTACATGTGAACCTTCTTAAGAATGATGACAATGTGGCTTTTTTGGAGGGTGTTAAGTATAGGAACATTGATGGTGAGCTTGTTGGTGTTGTAGGGGACTCATGGGTGCTGAGGCTAGAGCCTGTTTCGGTTACTTGCCATTCGATTAATGATGTTAAGGAAGAGTCGAAAAGTAAGATCATGGCTGCATTGTGCAAAGATGTGGAGGGTTTGAGTTTGACACCAGTTGCGACAGAGCGCGAATTCATAACCTTTTTTGTAGAAGAAAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

258

Amino Acids

28.47

Weight (kDa)

5.04

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_81	PF03639	43 - 212	2.1e-34	Glycosyl hydrolase family 81 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	741
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	743
AfiI	CCNNNNNNNGG	2 cut(s)	324, 413
AflII	CTTAAG	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	505
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	4 cut(s)	51, 241, 396, 580
AluI	AGCT	4 cut(s)	51, 241, 396, 580
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	3 cut(s)	355, 377, 686
ApoI	RAATTY	1 cut(s)	743
AseI	ATTAAT	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	2 cut(s)	40, 361
AsuHPI	GGTGA	2 cut(s)	428, 587
AsuII	TTCGAA	2 cut(s)	152, 209
AvaII	GGWCC	2 cut(s)	40, 361
BbvCI	CCTCAGC	1 cut(s)	611
BbvI	GCAGC	3 cut(s)	342, 364, 673
BccI	CCATC	4 cut(s)	191, 242, 428, 566
BciT130I	CCWGG	1 cut(s)	44
BclI	TGATCA	1 cut(s)	385
BfaI	CTAG	2 cut(s)	617, 775
BfrI	CTTAAG	1 cut(s)	518
BisI	GCNGC	3 cut(s)	356, 378, 687
BlsI	GCNGC	3 cut(s)	357, 379, 688
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	2 cut(s)	40, 361
BmgT120I	GGNCC	2 cut(s)	40, 361
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	611
Bpu14I	TTCGAA	2 cut(s)	152, 209
BpuEI	CTTGAG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 413
Bse1I	ACTGG	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	183, 496
BseLI	CCNNNNNNNGG	2 cut(s)	324, 413
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	1 cut(s)	725
BseXI	GCAGC	3 cut(s)	342, 364, 673
Bsh1236I	CGCG	1 cut(s)	741
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	118
BsiSI	CCGG	3 cut(s)	114, 333, 359
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	2 cut(s)	324, 413
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	1 cut(s)	101
Bsp119I	TTCGAA	2 cut(s)	152, 209
Bsp143I	GATC	5 cut(s)	217, 250, 282, 385, 678
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	603
BspFNI	CGCG	1 cut(s)	741
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	1 cut(s)	277
BspT104I	TTCGAA	2 cut(s)	152, 209
BspTI	CTTAAG	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	725
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	5 cut(s)	217, 250, 282, 385, 678
Bst2UI	CCWGG	1 cut(s)	44
Bst6I	CTCTTC	4 cut(s)	211, 280, 325, 657
BstAFI	CTTAAG	1 cut(s)	518
BstBI	TTCGAA	2 cut(s)	152, 209
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	1 cut(s)	611
BstF5I	GGATG	2 cut(s)	183, 496
BstFNI	CGCG	1 cut(s)	741
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	5 cut(s)	220, 253, 285, 388, 681
BstMBI	GATC	5 cut(s)	217, 250, 282, 385, 678
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	2 cut(s)	85, 509
BstSCI	CCNGG	1 cut(s)	42
BstUI	CGCG	1 cut(s)	741
BstV1I	GCAGC	3 cut(s)	342, 364, 673
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	183, 496
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	492
CfoI	GCGC	1 cut(s)	741
Cfr13I	GGNCC	2 cut(s)	40, 361
CsiI	ACCWGGT	1 cut(s)	42
CviAII	CATG	5 cut(s)	82, 258, 506, 603, 682
DdeI	CTNAG	1 cut(s)	611
DpnI	GATC	5 cut(s)	219, 252, 284, 387, 680
DpnII	GATC	5 cut(s)	217, 250, 282, 385, 678
Eam1104I	CTCTTC	4 cut(s)	211, 280, 325, 657
EarI	CTCTTC	4 cut(s)	211, 280, 325, 657
Eco47I	GGWCC	2 cut(s)	40, 361
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	743
EcoRII	CCWGG	1 cut(s)	42
FaeI	CATG	5 cut(s)	85, 261, 509, 606, 685
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	5 cut(s)	81, 257, 505, 602, 681
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	356, 378, 687
FokI	GGATG	2 cut(s)	170, 483
Fsp4HI	GCNGC	3 cut(s)	356, 378, 687
FspBI	CTAG	2 cut(s)	617, 775
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	3 cut(s)	356, 378, 687
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	3 cut(s)	114, 333, 359
HhaI	GCGC	1 cut(s)	741
Hin1II	CATG	5 cut(s)	85, 261, 509, 606, 685
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	5 cut(s)	56, 211, 368, 599, 665
HpaII	CCGG	3 cut(s)	114, 333, 359
HphI	GGTGA	2 cut(s)	428, 587
Hpy166II	GTNNAC	3 cut(s)	60, 268, 511
Hpy188I	TCNGA	4 cut(s)	55, 255, 373, 431
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	3 cut(s)	60, 268, 511
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	524
HpyCH4V	TGCA	4 cut(s)	91, 350, 689, 696
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	611
Hsp92II	CATG	5 cut(s)	85, 261, 509, 606, 685
HspAI	GCGC	1 cut(s)	739
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	5 cut(s)	217, 250, 282, 385, 678
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	3 cut(s)	342, 364, 673
MabI	ACCWGGT	1 cut(s)	42
MaeI	CTAG	2 cut(s)	617, 775
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	5 cut(s)	219, 252, 284, 387, 680
MboI	GATC	5 cut(s)	217, 250, 282, 385, 678
MboII	GAAGA	5 cut(s)	198, 267, 312, 674, 776
MluCI	AATT	2 cut(s)	442, 743
MlyI	GAGTC	3 cut(s)	65, 593, 674
MseI	TTAA	5 cut(s)	441, 519, 555, 648, 657
MslI	CAYNNNNRTG	1 cut(s)	86
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	3 cut(s)	114, 333, 359
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	741
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	5 cut(s)	217, 250, 282, 385, 678
NlaIII	CATG	5 cut(s)	85, 261, 509, 606, 685
NlaIV	GGNNCC	1 cut(s)	363
NspI	RCATGY	2 cut(s)	85, 509
NspV	TTCGAA	2 cut(s)	152, 209
PciI	ACATGT	1 cut(s)	505
PfeI	GAWTC	2 cut(s)	211, 368
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	357, 379, 688
PleI	GAGTC	3 cut(s)	64, 593, 673
PpsI	GAGTC	3 cut(s)	64, 593, 673
PpuMI	RGGWCCY	1 cut(s)	40
PscI	ACATGT	1 cut(s)	505
PshBI	ATTAAT	1 cut(s)	648
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	40, 361
PspPPI	RGGWCCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	5 cut(s)	441, 519, 555, 648, 657
SatI	GCNGC	3 cut(s)	356, 378, 687
Sau3AI	GATC	5 cut(s)	217, 250, 282, 385, 678
Sau96I	GGNCC	2 cut(s)	40, 361
SchI	GAGTC	3 cut(s)	65, 593, 674
ScrFI	CCNGG	1 cut(s)	44
SexAI	ACCWGGT	1 cut(s)	42
SfuI	TTCGAA	2 cut(s)	152, 209
SinI	GGWCC	2 cut(s)	40, 361
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	63, 518
SmoI	CTYRAG	2 cut(s)	63, 518
Sse9I	AATT	2 cut(s)	442, 743
SspMI	CTAG	2 cut(s)	617, 775
StyD4I	CCNGG	1 cut(s)	42
TaqI	TCGA	4 cut(s)	152, 209, 644, 668
TasI	AATT	2 cut(s)	442, 743
TfiI	GAWTC	2 cut(s)	211, 368
Tru1I	TTAA	5 cut(s)	441, 519, 555, 648, 657
Tru9I	TTAA	5 cut(s)	441, 519, 555, 648, 657
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	3 cut(s)	355, 377, 686
TspDTI	ATGAA	2 cut(s)	59, 736
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	357
Tth111I	GACNNNGTC	1 cut(s)	44
Vha464I	CTTAAG	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	40, 361
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	1 cut(s)	743
XceI	RCATGY	2 cut(s)	85, 509
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	2 cut(s)	617, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.