MD09G1081600.v1.1

Endo-1,3(4)-beta-glucanase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
5748281 .. 5753334
5054 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1081600.v1.1.491

Sequence Viewer

Length: 603 bp
ATGAAATTGACTCATCAATTAGCTCTCTCAATTCATCTAGGGTACTTTGTTTATGCCATTTCGGTGCTCGCGAAGATTGATCCAGAATGGGGGAGTAAGTATAGACCTCAAGCTTATTCAATGGCGATGGATTTCATTAACTGTTGTGGAGCTATGGGATTCACAGGTGATGAGATGGTCCTGAGTGAAGAGCAATATCTCTCCGATGACGTAGGCATGTTTTTGCTGAACCTCGTTTTGCTTCGTAAATCGTTGTGGGTGAGCACACCCGTTTTCCGGCGAACTGTGGACTTTGGAAGCTTTTTCCGGTCACCTCCGACCGAGTCACGGATTTTGGAAGGGGCAATTATTGTGACGTTTCCTTCTTCGCTAGTGGCGCAGCTTTTGGCAACTAAGTTAACTGAATTCTGGGACGGGCGTAATCAAGAGAGCACAAGCGAGGCACTGAATGTGTACTACTCAGCTGCATTGATGGGGTTAACATATGGAGATGACGATCTTGTTGCCACAGGATCAATGCTTGGAGAAATTTTTAGTTGTGACGGGAACACAAGTAATATACCACGTGTTTTAATAGGAATTGTGAGAAATTTTATTTTTTAA

Protein Analysis

201

Amino Acids

22.26

Weight (kDa)

4.76

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro81C PF17652 12 - 47 3.3e-07 Glycosyl hydrolase family 81 C-terminal domain
Glyco_hydro81C PF17652 130 - 175 1.1e-09 Glycosyl hydrolase family 81 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18310 AT5G15870
fragaria_vesca FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AclWI GGATC 2 cut(s) 74, 520
AcsI RAATTY 3 cut(s) 404, 528, 589
AcvI CACGTG 1 cut(s) 566
AfaI GTAC 2 cut(s) 44, 455
AfiI CCNNNNNNNGG 3 cut(s) 89, 276, 327
AflIII ACRYGT 1 cut(s) 565
AgsI TTSAA 1 cut(s) 120
AluBI AGCT 6 cut(s) 23, 113, 152, 300, 382, 464
AluI AGCT 6 cut(s) 23, 113, 152, 300, 382, 464
Alw21I GWGCWC 3 cut(s) 69, 266, 434
AlwI GGATC 2 cut(s) 74, 520
ApeKI GCWGC 2 cut(s) 379, 464
ApoI RAATTY 3 cut(s) 404, 528, 589
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 3 cut(s) 179, 271, 303
AvaII GGWCC 1 cut(s) 178
BbrPI CACGTG 1 cut(s) 566
Bbv12I GWGCWC 3 cut(s) 69, 266, 434
BbvI GCAGC 2 cut(s) 391, 451
BccI CCATC 3 cut(s) 121, 169, 466
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BfaI CTAG 2 cut(s) 38, 371
BisI GCNGC 2 cut(s) 380, 465
BlsI GCNGC 2 cut(s) 381, 466
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 566
BsaBI GATNNNNATC 1 cut(s) 495
BsaWI WCCGGW 1 cut(s) 306
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 276, 327
Bse8I GATNNNNATC 1 cut(s) 495
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 3 cut(s) 89, 276, 327
BseMII CTCAG 2 cut(s) 173, 474
BseXI GCAGC 2 cut(s) 391, 451
Bsh1236I CGCG 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 321
BsiHKAI GWGCWC 3 cut(s) 69, 266, 434
BsiSI CCGG 2 cut(s) 277, 307
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 3 cut(s) 89, 276, 327
BsmFI GGGAC 1 cut(s) 425
Bsp1286I GDGCHC 3 cut(s) 69, 266, 434
Bsp143I GATC 3 cut(s) 79, 496, 512
Bsp68I TCGCGA 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 174, 473
BspFNI CGCG 1 cut(s) 71
BspPI GGATC 2 cut(s) 74, 520
BspQI GCTCTTC 1 cut(s) 183
BssMI GATC 3 cut(s) 79, 496, 512
Bst4CI ACNGT 2 cut(s) 143, 286
Bst6I CTCTTC 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 3 cut(s) 182, 393, 460
BstEII GGTNACC 1 cut(s) 309
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 3 cut(s) 82, 499, 515
BstMBI GATC 3 cut(s) 79, 496, 512
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNSI RCATGY 1 cut(s) 220
BstPI GGTNACC 1 cut(s) 309
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 391, 451
BtgZI GCGATG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 443
BtuMI TCGCGA 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 43, 454
CviAII CATG 1 cut(s) 217
CviJI RGCY 6 cut(s) 23, 113, 152, 300, 382, 464
CviKI_1 RGCY 6 cut(s) 23, 113, 152, 300, 382, 464
CviQI GTAC 2 cut(s) 43, 454
DdeI CTNAG 3 cut(s) 182, 393, 460
DpnI GATC 3 cut(s) 81, 498, 514
DpnII GATC 3 cut(s) 79, 496, 512
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 178
Eco72I CACGTG 1 cut(s) 566
Eco91I GGTNACC 1 cut(s) 309
EcoO65I GGTNACC 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 404
FaeI CATG 1 cut(s) 220
FaiI YATR 7 cut(s) 54, 102, 155, 218, 484, 486, 560
FaqI GGGAC 1 cut(s) 425
FatI CATG 1 cut(s) 216
FauNDI CATATG 1 cut(s) 484
Fnu4HI GCNGC 2 cut(s) 380, 465
Fsp4HI GCNGC 2 cut(s) 380, 465
FspBI CTAG 2 cut(s) 38, 371
GlaI GCGC 1 cut(s) 378
GluI GCNGC 2 cut(s) 380, 465
HapII CCGG 2 cut(s) 277, 307
HhaI GCGC 1 cut(s) 379
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HincII GTYRAC 2 cut(s) 399, 480
HindII GTYRAC 2 cut(s) 399, 480
HindIII AAGCTT 2 cut(s) 111, 298
HinfI GANTC 3 cut(s) 10, 159, 323
HpaI GTTAAC 2 cut(s) 399, 480
HpaII CCGG 2 cut(s) 277, 307
HphI GGTGA 3 cut(s) 179, 271, 303
Hpy166II GTNNAC 4 cut(s) 289, 399, 454, 480
Hpy188I TCNGA 2 cut(s) 205, 318
Hpy188III TCNNGA 4 cut(s) 70, 83, 181, 425
Hpy8I GTNNAC 4 cut(s) 289, 399, 454, 480
HpyAV CCTTC 2 cut(s) 332, 372
HpyCH4III ACNGT 2 cut(s) 143, 286
HpyCH4IV ACGT 3 cut(s) 210, 356, 565
HpyCH4V TGCA 1 cut(s) 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 3 cut(s) 182, 393, 460
HpySE526I ACGT 3 cut(s) 210, 356, 565
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 1 cut(s) 377
KspAI GTTAAC 2 cut(s) 399, 480
Kzo9I GATC 3 cut(s) 79, 496, 512
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 7 cut(s) 96, 150, 194, 290, 320, 394, 495
Lsp1109I GCAGC 2 cut(s) 391, 451
MaeI CTAG 2 cut(s) 38, 371
MaeII ACGT 3 cut(s) 210, 356, 565
MaeIII GTNAC 4 cut(s) 309, 324, 352, 539
MalI GATC 3 cut(s) 81, 498, 514
MboI GATC 3 cut(s) 79, 496, 512
MboII GAAGA 3 cut(s) 85, 200, 357
MhlI GDGCHC 3 cut(s) 69, 266, 434
MluCI AATT 8 cut(s) 5, 17, 30, 345, 404, 528, 579, 589
MlyI GAGTC 2 cut(s) 4, 332
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 4 cut(s) 117, 242, 324, 433
MseI TTAA 5 cut(s) 138, 398, 479, 572, 601
MslI CAYNNNNRTG 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 2 cut(s) 277, 307
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 376
NdeI CATATG 1 cut(s) 484
NdeII GATC 3 cut(s) 79, 496, 512
NlaIII CATG 1 cut(s) 220
NmuCI GTSAC 4 cut(s) 309, 324, 352, 539
NruI TCGCGA 1 cut(s) 71
NspI RCATGY 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PfeI GAWTC 1 cut(s) 159
PflFI GACNNNGTC 1 cut(s) 322
PkrI GCNGC 2 cut(s) 381, 466
PleI GAGTC 2 cut(s) 4, 331
PmaCI CACGTG 1 cut(s) 566
PmlI CACGTG 1 cut(s) 566
PpsI GAGTC 2 cut(s) 4, 331
Ppu21I YACGTR 1 cut(s) 566
PspCI CACGTG 1 cut(s) 566
PspEI GGTNACC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 178
PsyI GACNNNGTC 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 464
RruI TCGCGA 1 cut(s) 71
RsaI GTAC 2 cut(s) 44, 455
RsaNI GTAC 2 cut(s) 43, 454
RseI CAYNNNNRTG 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 5 cut(s) 138, 398, 479, 572, 601
SatI GCNGC 2 cut(s) 380, 465
Sau3AI GATC 3 cut(s) 79, 496, 512
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 2 cut(s) 4, 332
SduI GDGCHC 3 cut(s) 69, 266, 434
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 8 cut(s) 5, 17, 30, 345, 404, 528, 579, 589
SspMI CTAG 2 cut(s) 38, 371
TaaI ACNGT 2 cut(s) 143, 286
TaiI ACGT 3 cut(s) 213, 359, 568
TaqII GACCGA 1 cut(s) 335
TasI AATT 8 cut(s) 5, 17, 30, 345, 404, 528, 579, 589
TatI WGTACW 1 cut(s) 453
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 5 cut(s) 138, 398, 479, 572, 601
Tru9I TTAA 5 cut(s) 138, 398, 479, 572, 601
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 4 cut(s) 309, 324, 352, 539
TseI GCWGC 2 cut(s) 379, 464
Tsp45I GTSAC 4 cut(s) 309, 324, 352, 539
TspDTI ATGAA 3 cut(s) 17, 23, 124
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 1 cut(s) 450
Tth111I GACNNNGTC 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 178
XapI RAATTY 3 cut(s) 404, 528, 589
XceI RCATGY 1 cut(s) 220
XspI CTAG 2 cut(s) 38, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.