Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038280.1

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

15221 .. 15910

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038280.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgaacttaggcaggagggcaaactcgaattatccacgtttgagatgctttgatttgtataagttgcattcatgggcaggagggctgactgaatttggagatggtaggaatcaagagagcacaagtgaggctgtgaatgcttactactcagctgcattgttggggctagcctatggagacacccatcttgtggccactggatcaatgcttgcggcattggaaattaaagctgctcaaatgtggtggcatgtgaaagagggagataacatttatgagccggatttcacaagggaaaatagggtagttggagtgctatgggcaaataagagggacagcggactgtggtttgctcctcctgagtggaaagagtgccggcttggaatccaattgctacccattttacccatctctgaggtattgttttctgatgttgcctttgttaggcaactcgtggagtggacagaaccagctctgagtagagagggtgttggggaaggatggaaagggtttgtctatactttgcaagggatttacgacaaacaaggcgctttggagaaaattaggaacttgaacggttatgatgatgggaactcgctcactaatctgttatggtggatccatagcagaggcgaggaaggagatggttgtggaattggagagaacatatgttggtttaagcactatcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

229

Amino Acids

25.96

Weight (kDa)

5.4

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	190
AciI	CCGC	2 cut(s)	212, 336
AclWI	GGATC	3 cut(s)	208, 610, 623
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	190, 441
AgsI	TTSAA	1 cut(s)	571
AluBI	AGCT	3 cut(s)	152, 230, 470
AluI	AGCT	3 cut(s)	152, 230, 470
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	3 cut(s)	208, 610, 623
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	152, 230
ApoI	RAATTY	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	548
AsuNHI	GCTAGC	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	615
BauI	CACGAG	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	139, 217
BccI	CCATC	6 cut(s)	95, 192, 413, 492, 578, 635
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	549
BisI	GCNGC	3 cut(s)	153, 213, 231
BlsI	GCNGC	3 cut(s)	154, 214, 232
BmiI	GGNNCC	1 cut(s)	617
BmsI	GCATC	1 cut(s)	35
BmtI	GCTAGC	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 441
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	2 cut(s)	190, 441
BseMII	CTCAG	4 cut(s)	162, 348, 402, 464
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	139, 217
BshFI	GGCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	278, 373
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	190, 441
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	2 cut(s)	67, 142
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	200, 615
BspACI	CCGC	2 cut(s)	212, 336
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	4 cut(s)	161, 349, 403, 465
BspLI	GGNNCC	1 cut(s)	617
BspOI	GCTAGC	1 cut(s)	170
BspPI	GGATC	3 cut(s)	208, 610, 623
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	372
BssMI	GATC	2 cut(s)	200, 615
BssSI	CACGAG	1 cut(s)	449
Bst2BI	CACGAG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	342, 575
BstC8I	GCNNGC	3 cut(s)	168, 210, 374
BstDEI	CTNAG	5 cut(s)	7, 148, 357, 411, 473
BstENI	CCTNNNNNAGG	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	503
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	2 cut(s)	203, 618
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	2 cut(s)	200, 615
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	139, 217
BstX2I	RGATCY	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	615
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	503
BtsIMutI	CAGTG	2 cut(s)	195, 685
Cac8I	GCNNGC	3 cut(s)	168, 210, 374
CfoI	GCGC	1 cut(s)	548
Cfr10I	RCCGGY	1 cut(s)	372
CspCI	CAANNNNNGTGG	2 cut(s)	224, 259
CviAII	CATG	2 cut(s)	72, 248
DdeI	CTNAG	5 cut(s)	7, 148, 357, 411, 473
DpnI	GATC	2 cut(s)	202, 617
DpnII	GATC	2 cut(s)	200, 615
EaeI	YGGCCR	1 cut(s)	192
EcoNI	CCTNNNNNAGG	1 cut(s)	439
FaeI	CATG	2 cut(s)	75, 251
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	2 cut(s)	71, 247
FauNDI	CATATG	1 cut(s)	665
Fnu4HI	GCNGC	3 cut(s)	153, 213, 231
FokI	GGATG	1 cut(s)	510
Fsp4HI	GCNGC	3 cut(s)	153, 213, 231
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	3 cut(s)	153, 213, 231
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	278, 373
HhaI	GCGC	1 cut(s)	548
Hin1II	CATG	2 cut(s)	75, 251
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HinfI	GANTC	2 cut(s)	109, 381
HpaII	CCGG	2 cut(s)	278, 373
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	3 cut(s)	412, 427, 474
Hpy188III	TCNNGA	2 cut(s)	113, 356
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	2 cut(s)	488, 629
HpyCH4III	ACNGT	2 cut(s)	342, 575
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	67, 155, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	5 cut(s)	7, 148, 357, 411, 473
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	75, 251
HspAI	GCGC	1 cut(s)	546
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	200, 615
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	6 cut(s)	63, 183, 291, 369, 386, 480
Lsp1109I	GCAGC	2 cut(s)	139, 217
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	37
MalI	GATC	2 cut(s)	202, 617
MboI	GATC	2 cut(s)	200, 615
MfeI	CAATTG	1 cut(s)	386
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	1 cut(s)	122
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	6 cut(s)	28, 92, 222, 386, 558, 651
MluNI	TGGCCA	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	286
Mox20I	TGGCCA	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	2 cut(s)	225, 675
Msp20I	TGGCCA	1 cut(s)	194
MspA1I	CMGCKG	2 cut(s)	152, 336
MspI	CCGG	2 cut(s)	278, 373
MunI	CAATTG	1 cut(s)	386
Mva1269I	GAATGC	2 cut(s)	67, 142
MwoI	GCNNNNNNNGC	1 cut(s)	137
NaeI	GCCGGC	1 cut(s)	374
NdeI	CATATG	1 cut(s)	665
NdeII	GATC	2 cut(s)	200, 615
NgoMIV	GCCGGC	1 cut(s)	372
NheI	GCTAGC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	75, 251
NlaIV	GGNNCC	1 cut(s)	617
NspI	RCATGY	1 cut(s)	251
PctI	GAATGC	2 cut(s)	67, 142
PdiI	GCCGGC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	109, 381
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	154, 214, 232
PspN4I	GGNNCC	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	615
PvuII	CAGCTG	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	225, 675
SatI	GCNGC	3 cut(s)	153, 213, 231
Sau3AI	GATC	2 cut(s)	200, 615
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	5 cut(s)	40, 154, 232, 417, 472
SfaNI	GCATC	1 cut(s)	35
Sse9I	AATT	6 cut(s)	28, 92, 222, 386, 558, 651
SsiI	CCGC	2 cut(s)	212, 336
SspMI	CTAG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	342, 575
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	26
TasI	AATT	6 cut(s)	28, 92, 222, 386, 558, 651
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	109, 381
Tru1I	TTAA	2 cut(s)	225, 675
Tru9I	TTAA	2 cut(s)	225, 675
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	2 cut(s)	152, 230
TspDTI	ATGAA	2 cut(s)	17, 60
TspRI	CASTG	1 cut(s)	202
Van91I	CCANNNNNTGG	1 cut(s)	190
XagI	CCTNNNNNAGG	1 cut(s)	439
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	251
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.