Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

37466581 .. 37467711

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44967.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCGTCCAAGAATACAATTACTTTGATATTGTTCATCATCATCACCTTCACTTCTCTCATCCCTCAAACCGAAGCTAGACTATTGCGCTCTCAACCAGCCGCTGCAATCCCTCAAACACCAATCCGTTTCCCCTTCCCCGAATCCCAATCCACAGTTCTCCCAGATCCTTCACAATTCTTTGCCTCAGATCTCCTCTCAACCCCTCTTCAAACTCGTTCTTCGAAAACTTCGTCCTCGGAAATGGCGACAACCCTGAATACTTCCACCCTTACCAAATCAAATCCTCCGGCTCCTCCTTATCTCTCTCTTACCCTAACCACATCCCAACCAGTACCTCCATACTCCAGAACTTCACCGCTAACCTCACCATCTCCGCCACACAAGACTAGGCCGACTACCAACAACATCACCACTGCAGACGAGTTTTACGGCATTATTAGGGTTGCATTGTTGCCGGGTTCAGAAAATGAGCCAGTTCTCGACCAGTACTGTGCTTGTTACCCAACGTCCGGTGAAGCTGTGTTCAAAGAGGAGTTTTCTTTGGAATACAGATGGAAGAAAACCGATGGAGATTTGCTCATGCTAGCTCATCCTCTACATATAAAGCTTCTCCAAAATAATGTCACTGTGCTGGAAAAATTCAAGTATAGAAGCATTGATGGTGACCTAGTTGGCGTTGTGGGAAACTCTTGGGTGTTGAAAACATCTCCTCTTCCGATCAATTGGCATTCCATCAATGGTGTCAAAGACAAAGCTTCACATACAGAAATTATTGCCGCTCTTTCTAGAGACATTGAGGGTCTAATCTCGACACCAATTTCAAACACGGATTCTAGAGACTTCTGGAGTAGTCCTAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

289

Amino Acids

31.71

Weight (kDa)

6.97

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_81	PF03639	127 - 243	7.1e-24	Glycosyl hydrolase family 81 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	782
AciI	CCGC	4 cut(s)	102, 359, 377, 780
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	641
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	336, 491
AfiI	CCNNNNNNNGG	1 cut(s)	512
AgsI	TTSAA	5 cut(s)	212, 529, 646, 703, 825
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	5 cut(s)	77, 521, 590, 610, 758
AluI	AGCT	5 cut(s)	77, 521, 590, 610, 758
Alw26I	GTCTC	2 cut(s)	786, 834
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	641
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspLEI	GCGC	1 cut(s)	90
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	6 cut(s)	37, 348, 360, 403, 527, 677
AsuII	TTCGAA	1 cut(s)	224
AsuNHI	GCTAGC	1 cut(s)	586
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	5 cut(s)	379, 549, 563, 656, 743
BceAI	ACGGC	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	786, 834
BfaI	CTAG	6 cut(s)	78, 390, 587, 671, 789, 837
BfmI	CTRYAG	1 cut(s)	417
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	3 cut(s)	102, 105, 780
BlsI	GCNGC	3 cut(s)	103, 106, 781
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	1 cut(s)	459
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	459
BmtI	GCTAGC	1 cut(s)	590
BplI	GAGNNNNNCTC	2 cut(s)	564, 596
BpmI	CTGGAG	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	858
Bpu14I	TTCGAA	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse1I	ACTGG	3 cut(s)	332, 476, 487
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	3 cut(s)	60, 323, 592
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	3 cut(s)	332, 476, 487
BseRI	GAGGAG	4 cut(s)	185, 285, 548, 702
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	1 cut(s)	394
BsiSI	CCGG	3 cut(s)	290, 458, 513
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	2 cut(s)	786, 834
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	1 cut(s)	394
Bsp119I	TTCGAA	1 cut(s)	224
Bsp143I	GATC	3 cut(s)	166, 190, 720
BspACI	CCGC	4 cut(s)	102, 359, 377, 780
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	294
BspMAI	CTGCAG	1 cut(s)	421
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	1 cut(s)	161
BspT104I	TTCGAA	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	782
BsrI	ACTGG	3 cut(s)	332, 476, 487
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	3 cut(s)	166, 190, 720
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	3 cut(s)	157, 494, 631
Bst6I	CTCTTC	2 cut(s)	213, 720
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	588
BstDEI	CTNAG	2 cut(s)	187, 858
BstEII	GGTNACC	1 cut(s)	665
BstF5I	GGATG	3 cut(s)	60, 323, 592
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	3 cut(s)	169, 193, 723
BstMAI	GTCTC	2 cut(s)	786, 834
BstMBI	GATC	3 cut(s)	166, 190, 720
BstPI	GGTNACC	1 cut(s)	665
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	2 cut(s)	166, 190
BstYI	RGATCY	2 cut(s)	166, 190
BsuRI	GGCC	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	60, 323, 592
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	2 cut(s)	414, 627
Cac8I	GCNNGC	1 cut(s)	588
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	335, 490
CviAII	CATG	1 cut(s)	583
CviQI	GTAC	2 cut(s)	335, 490
DdeI	CTNAG	2 cut(s)	187, 858
DpnI	GATC	3 cut(s)	168, 192, 722
DpnII	GATC	3 cut(s)	166, 190, 720
Eam1104I	CTCTTC	2 cut(s)	213, 720
EarI	CTCTTC	2 cut(s)	213, 720
EciI	GGCGGA	1 cut(s)	366
Eco91I	GGTNACC	1 cut(s)	665
EcoO65I	GGTNACC	1 cut(s)	665
FaeI	CATG	1 cut(s)	586
FaiI	YATR	6 cut(s)	343, 584, 603, 605, 651, 765
FatI	CATG	1 cut(s)	582
Fnu4HI	GCNGC	3 cut(s)	102, 105, 780
FokI	GGATG	3 cut(s)	47, 310, 579
Fsp4HI	GCNGC	3 cut(s)	102, 105, 780
FspBI	CTAG	6 cut(s)	78, 390, 587, 671, 789, 837
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	3 cut(s)	102, 105, 780
GsuI	CTGGAG	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	3 cut(s)	290, 458, 513
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	586
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HindIII	AAGCTT	2 cut(s)	608, 756
HinfI	GANTC	2 cut(s)	143, 833
HpaII	CCGG	3 cut(s)	290, 458, 513
HphI	GGTGA	6 cut(s)	37, 348, 360, 403, 527, 677
Hpy188I	TCNGA	4 cut(s)	190, 241, 466, 720
Hpy188III	TCNNGA	6 cut(s)	348, 482, 789, 811, 837, 847
HpyAV	CCTTC	3 cut(s)	58, 145, 180
HpyCH4III	ACNGT	3 cut(s)	157, 494, 631
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	3 cut(s)	107, 419, 449
HpyF3I	CTNAG	2 cut(s)	187, 858
HpySE526I	ACGT	1 cut(s)	509
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	586
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	166, 190, 720
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	1 cut(s)	91
MaeI	CTAG	6 cut(s)	78, 390, 587, 671, 789, 837
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	3 cut(s)	500, 625, 665
MalI	GATC	3 cut(s)	168, 192, 722
MbiI	CCGCTC	1 cut(s)	782
MboI	GATC	3 cut(s)	166, 190, 720
MboII	GAAGA	4 cut(s)	200, 213, 571, 707
MfeI	CAATTG	1 cut(s)	724
MflI	RGATCY	2 cut(s)	166, 190
MluCI	AATT	6 cut(s)	18, 176, 641, 724, 771, 819
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	3 cut(s)	290, 458, 513
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	1 cut(s)	724
Mva1269I	GAATGC	1 cut(s)	730
NciI	CCSGG	1 cut(s)	459
NdeII	GATC	3 cut(s)	166, 190, 720
NheI	GCTAGC	1 cut(s)	586
NlaIII	CATG	1 cut(s)	586
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	2 cut(s)	625, 665
NspV	TTCGAA	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	2 cut(s)	230, 245
PctI	GAATGC	1 cut(s)	730
PfeI	GAWTC	2 cut(s)	143, 833
PkrI	GCNGC	3 cut(s)	103, 106, 781
PspEI	GGTNACC	1 cut(s)	665
PspN4I	GGNNCC	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	2 cut(s)	166, 190
RsaI	GTAC	2 cut(s)	336, 491
RsaNI	GTAC	2 cut(s)	335, 490
SatI	GCNGC	3 cut(s)	102, 105, 780
Sau3AI	GATC	3 cut(s)	166, 190, 720
ScaI	AGTACT	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	459
SfcI	CTRYAG	1 cut(s)	417
SfuI	TTCGAA	1 cut(s)	224
Sse9I	AATT	6 cut(s)	18, 176, 641, 724, 771, 819
SsiI	CCGC	4 cut(s)	102, 359, 377, 780
SspMI	CTAG	6 cut(s)	78, 390, 587, 671, 789, 837
StyD4I	CCNGG	1 cut(s)	457
TaaI	ACNGT	3 cut(s)	157, 494, 631
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	3 cut(s)	224, 483, 812
TasI	AATT	6 cut(s)	18, 176, 641, 724, 771, 819
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	2 cut(s)	104, 782
TfiI	GAWTC	2 cut(s)	143, 833
TscAI	CASTG	2 cut(s)	421, 634
TseFI	GTSAC	2 cut(s)	625, 665
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	2 cut(s)	625, 665
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	2 cut(s)	116, 845
TspRI	CASTG	2 cut(s)	421, 634
XapI	RAATTY	1 cut(s)	641
XbaI	TCTAGA	2 cut(s)	788, 836
XspI	CTAG	6 cut(s)	78, 390, 587, 671, 789, 837
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.