Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8304887.1

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 904

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8304887.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

tacaccaattgcaactacttcttcatatttttatgggaagttgattgctagagctgcgaggttggctttgattgctgaggaggtgggttatcttgatgtgattccagcgattaagaagtatttgagtgatacaattgagccttggttggatgggacttttggtgggaatggtttcttgtatgatagtaaatggggtggcattgtgacgaaacaaggatcagcggattcgggagcagatttcgggtttgggatttacaatgatcaccattaccatttagggtactttatttatgccatttcagtgcttgctaagattgatccagcgtgggggaggaagtatagggctcaagcttattcacttgccgcggattttatgaacttaggcaggagggcaaactcgaattatccacgtttgagatgctttgatttgtataagttgcattcatgggcaggagggctgactgaatttggagatggtaggaatcaagagagcacaagtgaggctgtgaatgcttactactcagctgcattgttggggctagcctatggagacacccatcttgtggccactggatcaatgcttgcggcattggaaattaaagctgctcaaatgtggtggcatgtgaaagagggagataacatttatgagccggatttcacaagggaaaatagggtagttggagtgctatgggcaaataagagggacagcggactgtggtttgctcctcctgagtggaaagagtgccggcttggaatccaattgctacccattttacccatctctgaggtattgttttctgatgttgcctttgttaggcaactcgtggagtggacagaaccagctctgagtagagagggtgttggggaaggatggaaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

293

Amino Acids

32.66

Weight (kDa)

5.72

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccII	CGCG	1 cut(s)	366
AciI	CCGC	5 cut(s)	222, 364, 366, 585, 709
AclWI	GGATC	3 cut(s)	224, 312, 581
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	465
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	3 cut(s)	327, 563, 814
AluBI	AGCT	5 cut(s)	54, 351, 525, 603, 843
AluI	AGCT	5 cut(s)	54, 351, 525, 603, 843
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	3 cut(s)	224, 312, 581
AoxI	GGCC	1 cut(s)	565
ApeKI	GCWGC	3 cut(s)	54, 525, 603
ApoI	RAATTY	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	255
AsuNHI	GCTAGC	1 cut(s)	539
BalI	TGGCCA	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	347
BauI	CACGAG	1 cut(s)	822
Bbv12I	GWGCWC	1 cut(s)	495
BbvCI	CCTCAGC	1 cut(s)	76
BbvI	GCAGC	3 cut(s)	41, 512, 590
BccI	CCATC	5 cut(s)	144, 468, 565, 786, 865
BclI	TGATCA	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	2 cut(s)	49, 540
BisI	GCNGC	5 cut(s)	55, 364, 526, 586, 604
BlsI	GCNGC	5 cut(s)	56, 365, 527, 587, 605
BmsI	GCATC	1 cut(s)	408
BmtI	GCTAGC	1 cut(s)	543
Bpu10I	CCTNAGC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	331
BsaJI	CCNNGG	2 cut(s)	141, 364
Bsc4I	CCNNNNNNNGG	3 cut(s)	327, 563, 814
Bse118I	RCCGGY	1 cut(s)	745
Bse1I	ACTGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	141, 364
BseGI	GGATG	2 cut(s)	155, 876
BseLI	CCNNNNNNNGG	3 cut(s)	327, 563, 814
BseMII	CTCAG	5 cut(s)	67, 535, 721, 775, 837
BseNI	ACTGG	1 cut(s)	575
BseRI	GAGGAG	2 cut(s)	93, 715
BseXI	GCAGC	3 cut(s)	41, 512, 590
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	567
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	651, 746
BslFI	GGGAC	2 cut(s)	167, 717
BslI	CCNNNNNNNGG	3 cut(s)	327, 563, 814
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	2 cut(s)	167, 717
BsmI	GAATGC	2 cut(s)	440, 515
BsnI	GGCC	1 cut(s)	567
Bsp1286I	GDGCHC	2 cut(s)	347, 495
Bsp143I	GATC	4 cut(s)	216, 260, 317, 573
BspACI	CCGC	5 cut(s)	222, 364, 366, 585, 709
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	5 cut(s)	68, 534, 722, 776, 838
BspFNI	CGCG	1 cut(s)	366
BspOI	GCTAGC	1 cut(s)	543
BspPI	GGATC	3 cut(s)	224, 312, 581
BsrFI	RCCGGY	1 cut(s)	745
BsrI	ACTGG	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	745
BssECI	CCNNGG	2 cut(s)	141, 364
BssMI	GATC	4 cut(s)	216, 260, 317, 573
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	822
Bst4CI	ACNGT	1 cut(s)	715
BstC8I	GCNNGC	4 cut(s)	307, 541, 583, 747
BstDEI	CTNAG	7 cut(s)	76, 310, 380, 521, 730, 784, 846
BstDSI	CCRYGG	1 cut(s)	364
BstENI	CCTNNNNNAGG	1 cut(s)	812
BstF5I	GGATG	2 cut(s)	155, 876
BstFNI	CGCG	1 cut(s)	366
BstKTI	GATC	4 cut(s)	219, 263, 320, 576
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	4 cut(s)	216, 260, 317, 573
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 63, 72, 510
BstNSI	RCATGY	1 cut(s)	624
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	41, 512, 590
BsuRI	GGCC	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	155, 876
BtsIMutI	CAGTG	2 cut(s)	307, 568
Cac8I	GCNNGC	4 cut(s)	307, 541, 583, 747
Cfr10I	RCCGGY	1 cut(s)	745
Cfr42I	CCGCGG	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	281
CspCI	CAANNNNNGTGG	2 cut(s)	597, 632
CviAII	CATG	2 cut(s)	445, 621
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	7 cut(s)	76, 310, 380, 521, 730, 784, 846
DpnI	GATC	4 cut(s)	218, 262, 319, 575
DpnII	GATC	4 cut(s)	216, 260, 317, 573
EaeI	YGGCCR	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	347
EcoNI	CCTNNNNNAGG	1 cut(s)	812
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	448, 624
FaqI	GGGAC	2 cut(s)	167, 717
FatI	CATG	2 cut(s)	444, 620
FbaI	TGATCA	1 cut(s)	260
Fnu4HI	GCNGC	5 cut(s)	55, 364, 526, 586, 604
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	5 cut(s)	55, 364, 526, 586, 604
FspBI	CTAG	2 cut(s)	49, 540
GluI	GCNGC	5 cut(s)	55, 364, 526, 586, 604
HaeIII	GGCC	1 cut(s)	567
HapII	CCGG	2 cut(s)	651, 746
Hin1II	CATG	2 cut(s)	448, 624
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	4 cut(s)	101, 225, 482, 754
HpaII	CCGG	2 cut(s)	651, 746
HphI	GGTGA	1 cut(s)	255
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	3 cut(s)	785, 800, 847
Hpy188III	TCNNGA	4 cut(s)	93, 229, 486, 729
Hpy8I	GTNNAC	1 cut(s)	832
HpyAV	CCTTC	1 cut(s)	861
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	3 cut(s)	12, 440, 528
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 63, 72, 510
HpyF3I	CTNAG	7 cut(s)	76, 310, 380, 521, 730, 784, 846
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	2 cut(s)	448, 624
KroI	GCCGGC	1 cut(s)	745
KroNI	GCCGGC	1 cut(s)	747
Ksp22I	TGATCA	1 cut(s)	260
KspI	CCGCGG	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	216, 260, 317, 573
LmnI	GCTCC	2 cut(s)	231, 728
LpnPI	CCDG	9 cut(s)	118, 334, 371, 436, 556, 664, 742, 759, 853
Lsp1109I	GCAGC	3 cut(s)	41, 512, 590
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	2 cut(s)	49, 540
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	4 cut(s)	218, 262, 319, 575
MboI	GATC	4 cut(s)	216, 260, 317, 573
MboII	GAAGA	1 cut(s)	13
MfeI	CAATTG	3 cut(s)	7, 133, 759
MhlI	GDGCHC	2 cut(s)	347, 495
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	6 cut(s)	7, 133, 401, 465, 595, 759
MluNI	TGGCCA	1 cut(s)	567
MmeI	TCCRAC	2 cut(s)	127, 659
Mox20I	TGGCCA	1 cut(s)	567
MroNI	GCCGGC	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	2 cut(s)	112, 598
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	567
MspA1I	CMGCKG	4 cut(s)	222, 366, 525, 709
MspI	CCGG	2 cut(s)	651, 746
MunI	CAATTG	3 cut(s)	7, 133, 759
Mva1269I	GAATGC	2 cut(s)	440, 515
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	4 cut(s)	54, 63, 72, 510
NaeI	GCCGGC	1 cut(s)	747
NdeII	GATC	4 cut(s)	216, 260, 317, 573
NgoMIV	GCCGGC	1 cut(s)	745
NheI	GCTAGC	1 cut(s)	539
NlaIII	CATG	2 cut(s)	448, 624
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	624
PctI	GAATGC	2 cut(s)	440, 515
PdiI	GCCGGC	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	4 cut(s)	101, 225, 482, 754
PflMI	CCANNNNNTGG	1 cut(s)	563
PkrI	GCNGC	5 cut(s)	56, 365, 527, 587, 605
PvuII	CAGCTG	1 cut(s)	525
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	300
SacII	CCGCGG	1 cut(s)	367
SaqAI	TTAA	2 cut(s)	112, 598
SatI	GCNGC	5 cut(s)	55, 364, 526, 586, 604
Sau3AI	GATC	4 cut(s)	216, 260, 317, 573
SduI	GDGCHC	2 cut(s)	347, 495
SetI	ASST	9 cut(s)	56, 63, 85, 353, 413, 527, 605, 790, 845
SfaNI	GCATC	1 cut(s)	408
Sfr303I	CCGCGG	1 cut(s)	367
SgrBI	CCGCGG	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	6 cut(s)	7, 133, 401, 465, 595, 759
SsiI	CCGC	5 cut(s)	222, 364, 366, 585, 709
SspMI	CTAG	2 cut(s)	49, 540
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	715
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	399
TasI	AATT	6 cut(s)	7, 133, 401, 465, 595, 759
TauI	GCSGC	2 cut(s)	366, 588
TfiI	GAWTC	4 cut(s)	101, 225, 482, 754
Tru1I	TTAA	2 cut(s)	112, 598
Tru9I	TTAA	2 cut(s)	112, 598
TscAI	CASTG	2 cut(s)	307, 575
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	54, 525, 603
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	3 cut(s)	13, 390, 433
TspRI	CASTG	2 cut(s)	307, 575
Van91I	CCANNNNNTGG	1 cut(s)	563
XagI	CCTNNNNNAGG	1 cut(s)	812
XapI	RAATTY	1 cut(s)	465
XceI	RCATGY	1 cut(s)	624
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	2 cut(s)	49, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.