Rorug03G0247300

Endo-1,3(4)-beta-glucanase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
23188320 .. 23191448
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0247300.1

Sequence Viewer

Length: 672 bp
ATGTCGAATATGTATGGTGATTATAACCAGAAGATTGATTATGTGTTCAAAGTGGTGTTGATCGGAGACTCGGCGGTTGGGAAAACACAGCTCCTCGCACGATTTGCAAGAAATGAATTCAGTTTAGACTCCAAAGCCACAATCGGAGTTGAATTTCAGACGAAAACACTTGTTCTTGATAACAAAACCGTTAAGGCGCAGATTTGGGATACTGCTGGCCAAGAAAGGTACAGAGCAGTCACGAGTGCATACTACCGAGGTGCAGTCGGAGCAATGTTGGTGTATGACATGACCAAGCGTCAATCTTTTGACCACATGGCTAGGTGGTTGGAAGAATTAAGGGGGCATGCTGATAAGAACATTGTTATAATGCTCATCGGCAACAAATGTGACTTGGGAAGTCTTCGAGCAGTGCCAACTGAAGATGCTCAGGAGTTCGCTCAAAGAGAGAACCTATTCTTTATGGAGACATCTGCTCTTCAGGCTACCAATGTTGAAACAGCATTTTTAATGATTTTAAGGGAGATATATCGAATAATGAGCAAGAAGACCCTCGCTGCTAATGAGGCAGATGGTGGGGATTCAGGGCTCCTTAAGGGGACTGCAATTACTGTTCCTAGTCCAGAACCGGCTGGTGCCCAGAAGGGTGGCTGCTGCTTTGCCTCTTCCTAA

Protein Analysis

223

Amino Acids

24.65

Weight (kDa)

6.74

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 15 - 152 1.1e-13 ADP-ribosylation factor family
Ras PF00071 17 - 177 2.4e-63 Ras family
Roc PF08477 17 - 131 3.4e-35 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18310 AT5G15870
fragaria_vesca FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 24, 368
AccB1I GGYRCC 1 cut(s) 635
AciI CCGC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 2 cut(s) 116, 152
AcuI CTGAAG 2 cut(s) 441, 464
AfaI GTAC 1 cut(s) 230
AflII CTTAAG 1 cut(s) 593
AgsI TTSAA 3 cut(s) 49, 152, 497
AhdI GACNNNNNGTC 1 cut(s) 297
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw26I GTCTC 2 cut(s) 60, 461
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 3 cut(s) 557, 651, 654
ApoI RAATTY 2 cut(s) 116, 152
Asp700I GAANNNNTTC 1 cut(s) 455
AspLEI GCGC 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 640
BalI TGGCCA 1 cut(s) 219
BanI GGYRCC 1 cut(s) 635
BanII GRGCYC 1 cut(s) 591
BauI CACGAG 1 cut(s) 241
BbsI GAAGAC 2 cut(s) 395, 554
BbvI GCAGC 3 cut(s) 544, 638, 641
BccI CCATC 1 cut(s) 566
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 60, 461
BfaI CTAG 2 cut(s) 321, 618
BfrI CTTAAG 1 cut(s) 593
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 3 cut(s) 558, 652, 655
BlsI GCNGC 3 cut(s) 559, 653, 656
BmeRI GACNNNNNGTC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 590, 637
BmsI GCATC 1 cut(s) 415
BpiI GAAGAC 2 cut(s) 395, 554
Bpu10I CCTNAGC 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 256
Bse118I RCCGGY 1 cut(s) 628
Bse3DI GCAATG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 443
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 3 cut(s) 544, 638, 641
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 635
BsiSI CCGG 1 cut(s) 629
BslFI GGGAC 1 cut(s) 613
BsmAI GTCTC 2 cut(s) 60, 461
BsmFI GGGAC 1 cut(s) 613
BsnI GGCC 1 cut(s) 219
Bsp1286I GDGCHC 2 cut(s) 591, 640
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 2 cut(s) 590, 637
BspQI GCTCTTC 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 635
BspTI CTTAAG 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 628
BssAI RCCGGY 1 cut(s) 628
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 1 cut(s) 60
BssSI CACGAG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 241
Bst4CI ACNGT 2 cut(s) 190, 613
Bst6I CTCTTC 1 cut(s) 483
BstAFI CTTAAG 1 cut(s) 593
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 217, 348
BstDEI CTNAG 1 cut(s) 429
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 2 cut(s) 60, 461
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 4 cut(s) 104, 269, 482, 566
BstNSI RCATGY 1 cut(s) 350
BstSLI GKGCMC 1 cut(s) 640
BstV1I GCAGC 3 cut(s) 544, 638, 641
BstV2I GAAGAC 2 cut(s) 395, 554
BstXI CCANNNNNNTGG 1 cut(s) 647
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 217, 348
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 628
CseI GACGC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 229
CviAII CATG 3 cut(s) 289, 316, 347
CviJI RGCY 8 cut(s) 91, 137, 219, 320, 485, 589, 632, 651
CviKI_1 RGCY 8 cut(s) 91, 137, 219, 320, 485, 589, 632, 651
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 429
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
DriI GACNNNNNGTC 1 cut(s) 297
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 483
Eam1105I GACNNNNNGTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 591
Eco57I CTGAAG 2 cut(s) 441, 464
EcoRI GAATTC 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 591
FaeI CATG 3 cut(s) 292, 319, 350
FaqI GGGAC 1 cut(s) 613
FatI CATG 3 cut(s) 288, 315, 346
Fnu4HI GCNGC 3 cut(s) 558, 652, 655
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 3 cut(s) 558, 652, 655
FspBI CTAG 2 cut(s) 321, 618
GlaI GCGC 1 cut(s) 198
GluI GCNGC 3 cut(s) 558, 652, 655
HaeIII GGCC 1 cut(s) 219
HapII CCGG 1 cut(s) 629
HgaI GACGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 199
Hin1II CATG 3 cut(s) 292, 319, 350
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 3 cut(s) 68, 128, 581
HpaII CCGG 1 cut(s) 629
HphI GGTGA 1 cut(s) 29
Hpy188I TCNGA 4 cut(s) 65, 146, 159, 269
Hpy188III TCNNGA 4 cut(s) 176, 241, 431, 623
HpyAV CCTTC 1 cut(s) 637
HpyCH4III ACNGT 2 cut(s) 190, 613
HpyCH4V TGCA 4 cut(s) 107, 248, 263, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 269, 482, 566
HpyF3I CTNAG 1 cut(s) 429
Hsp92II CATG 3 cut(s) 292, 319, 350
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 60
LguI GCTCTTC 1 cut(s) 483
LmnI GCTCC 3 cut(s) 96, 269, 594
LpnPI CCDG 9 cut(s) 41, 201, 416, 467, 570, 618, 636, 642, 653
Lsp1109I GCAGC 3 cut(s) 544, 638, 641
LweI GCATC 1 cut(s) 415
MaeI CTAG 2 cut(s) 321, 618
MaeIII GTNAC 2 cut(s) 238, 389
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 7 cut(s) 43, 344, 395, 434, 470, 559, 657
MhlI GDGCHC 2 cut(s) 591, 640
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 4 cut(s) 116, 152, 335, 606
MluNI TGGCCA 1 cut(s) 219
MlyI GAGTC 2 cut(s) 62, 122
MmeI TCCRAC 2 cut(s) 247, 309
MnlI CCTC 4 cut(s) 104, 251, 559, 563
Mox20I TGGCCA 1 cut(s) 219
MroXI GAANNNNTTC 1 cut(s) 455
MscI TGGCCA 1 cut(s) 219
MseI TTAA 5 cut(s) 192, 338, 509, 518, 594
Msp20I TGGCCA 1 cut(s) 219
MspCI CTTAAG 1 cut(s) 593
MspI CCGG 1 cut(s) 629
MwoI GCNNNNNNNGC 4 cut(s) 104, 269, 482, 566
NdeII GATC 1 cut(s) 60
NlaIII CATG 3 cut(s) 292, 319, 350
NlaIV GGNNCC 2 cut(s) 590, 637
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 238, 389
NspI RCATGY 1 cut(s) 350
PaeI GCATGC 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 1 cut(s) 581
PkrI GCNGC 3 cut(s) 559, 653, 656
PleI GAGTC 2 cut(s) 62, 122
PpsI GAGTC 2 cut(s) 62, 122
PsiI TTATAA 2 cut(s) 24, 368
PspN4I GGNNCC 2 cut(s) 590, 637
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 5 cut(s) 192, 338, 509, 518, 594
SatI GCNGC 3 cut(s) 558, 652, 655
Sau3AI GATC 1 cut(s) 60
SchI GAGTC 2 cut(s) 62, 122
SduI GDGCHC 2 cut(s) 591, 640
SetI ASST 5 cut(s) 93, 230, 262, 326, 456
SfaNI GCATC 1 cut(s) 415
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
SphI GCATGC 1 cut(s) 350
Sse9I AATT 4 cut(s) 116, 152, 335, 606
SsiI CCGC 1 cut(s) 74
SspMI CTAG 2 cut(s) 321, 618
TaaI ACNGT 2 cut(s) 190, 613
TaqI TCGA 3 cut(s) 5, 406, 532
TasI AATT 4 cut(s) 116, 152, 335, 606
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 5 cut(s) 192, 338, 509, 518, 594
Tru9I TTAA 5 cut(s) 192, 338, 509, 518, 594
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 2 cut(s) 238, 389
TseI GCWGC 3 cut(s) 557, 651, 654
Tsp45I GTSAC 2 cut(s) 238, 389
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 417
Vha464I CTTAAG 1 cut(s) 593
XapI RAATTY 2 cut(s) 116, 152
XceI RCATGY 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 455
XspI CTAG 2 cut(s) 321, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.