Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Reverse (-)

37330340 .. 37330798

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG335000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCTTGCAGCATTGGAAATCCAGGCAGCTCAAATGTGGTGCCATGTAAGAGAGGGTGATAACATTTATGCACCAGATTACACAAAGGAAAGTCGGGTAGTTGGAGTACTGCTGTGGGCTAATAAGAGAAACAGTAATCTTTGGTTTGCGCCTGCACAGCGGAGAGAGTGCCTGCTTGGAATCCAGCTGTTGCCTATTGTACCTATTACTGAGGAATTGTTCTCTGATGTTGGCTATGTTAGGGAACTTGTGAAGTGGACTGAACCGGCTCTTATTAGAGAGGGTGTTGGGGAAGGATGGAAAGGGTTTGTGTACTCTTTGCAAGGGATTTATGACAAGAATGGTGCTTTGAATGGTCACGATGATGGCAACTCGCTTACGAATCTGTTATGGTGGATCGACAGCAGAGGTGAGGAAAGAGATGGATGCCAAGTCGGAGAGAAGATTTGCTCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

152

Amino Acids

17.18

Weight (kDa)

4.93

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	2 - 119	3.3e-21	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	404
AfaI	GTAC	3 cut(s)	108, 201, 314
AgsI	TTSAA	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	2 cut(s)	29, 187
AluI	AGCT	2 cut(s)	29, 187
AlwI	GGATC	1 cut(s)	404
ApeKI	GCWGC	2 cut(s)	8, 26
AspLEI	GCGC	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	68, 422
BanI	GGYRCC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	20, 38
BccI	CCATC	3 cut(s)	291, 359, 416
BciT130I	CCWGG	1 cut(s)	23
BisI	GCNGC	2 cut(s)	9, 27
BlsI	GCNGC	2 cut(s)	10, 28
BmcAI	AGTACT	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	416
Bse118I	RCCGGY	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	23
BseGI	GGATG	2 cut(s)	302, 431
BseMII	CTCAG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	20, 38
BsgI	GTGCAG	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	396
BspACI	CCGC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssMI	GATC	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	134
BstC8I	GCNNGC	3 cut(s)	6, 153, 173
BstDEI	CTNAG	2 cut(s)	210, 451
BstF5I	GGATG	2 cut(s)	302, 431
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	20, 38
BtsCI	GGATG	2 cut(s)	302, 431
Cac8I	GCNNGC	3 cut(s)	6, 153, 173
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	265
Csp6I	GTAC	3 cut(s)	107, 200, 313
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	5 cut(s)	29, 119, 187, 234, 269
CviKI_1	RGCY	5 cut(s)	29, 119, 187, 234, 269
CviQI	GTAC	3 cut(s)	107, 200, 313
DdeI	CTNAG	2 cut(s)	210, 451
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	47
FaiI	YATR	5 cut(s)	45, 69, 237, 333, 391
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	9, 27
FokI	GGATG	2 cut(s)	309, 438
Fsp4HI	GCNGC	2 cut(s)	9, 27
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	2 cut(s)	9, 27
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	2 cut(s)	180, 382
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	2 cut(s)	68, 422
Hpy166II	GTNNAC	2 cut(s)	258, 313
Hpy188I	TCNGA	2 cut(s)	226, 437
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	2 cut(s)	258, 313
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4V	TGCA	4 cut(s)	8, 71, 155, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	2 cut(s)	210, 451
Hsp92II	CATG	1 cut(s)	47
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	396
LpnPI	CCDG	7 cut(s)	8, 35, 87, 165, 185, 197, 279
Lsp1109I	GCAGC	2 cut(s)	20, 38
LweI	GCATC	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	1 cut(s)	454
MluCI	AATT	1 cut(s)	215
MmeI	TCCRAC	2 cut(s)	82, 415
MnlI	CCTC	5 cut(s)	46, 205, 274, 401, 406
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	160, 187
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	1 cut(s)	396
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	180, 382
PkrI	GCNGC	2 cut(s)	10, 28
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	3 cut(s)	108, 201, 314
RsaNI	GTAC	3 cut(s)	107, 200, 313
RseI	CAYNNNNRTG	1 cut(s)	363
SatI	GCNGC	2 cut(s)	9, 27
Sau3AI	GATC	1 cut(s)	396
ScaI	AGTACT	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	4 cut(s)	31, 189, 205, 412
SfaNI	GCATC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	1 cut(s)	215
SsiI	CCGC	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	399
TasI	AATT	1 cut(s)	215
TatI	WGTACW	2 cut(s)	106, 312
TfiI	GAWTC	2 cut(s)	180, 382
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	2 cut(s)	8, 26
Tsp45I	GTSAC	1 cut(s)	356
ZrmI	AGTACT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.